Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1162400 Malus domestica HOM05D004148 ORTHO05D004709 0.0e+00 1214.9 610 100.0
MD11G1178600 Malus domestica HOM05D004148 ORTHO05D004709 2.8e-282 974.9 579 87.2
Prupe.6G151400 Prunus persica HOM05D004148 ORTHO05D004709 6.7e-260 900.6 575 80.2
RcHm_v2.0_Chr5g0049541 Rosa chinensis HOM05D004148 ORTHO05D004709 1.2e-224 783.5 577 71.9
FAN12G2472 Fragaria x ananassa HOM05D004148 ORTHO05D004709 2.5e-198 696.0 575 66.1
FvH4_4g33990 Fragaria vesca HOM05D004148 ORTHO05D004709 2.6e-195 686.0 575 65.2
FAN22G0787 Fragaria x ananassa HOM05D004148 ORTHO05D004709 9.8e-195 684.1 575 65.6
FAN17G2621 Fragaria x ananassa HOM05D004148 ORTHO05D004709 4.1e-193 678.7 575 65.2
Cfa010235 Carpinus fangiana HOM05D004148 ORTHO05D004709 2.4e-185 652.9 595 60.5
QL01p018674 Quercus lobata HOM05D004148 ORTHO05D004709 1.5e-179 633.6 579 61.0
Dinv32838 Davidia involucrata HOM05D004148 ORTHO05D004709 3.0e-175 619.4 595 59.8
Ciclev10027694m.g Citrus clementina HOM05D004148 ORTHO05D004709 1.5e-171 607.1 569 58.7
Atru.chr3.3014 Acer truncatum HOM05D004148 ORTHO05D004709 2.9e-170 602.8 576 56.2
Gohir.D05G079200 Gossypium hirsutum HOM05D004148 ORTHO05D004709 4.2e-169 599.0 587 56.0
GSVIVG01022379001 Vitis vinifera HOM05D004148 ORTHO05D004709 7.1e-169 598.2 579 58.2
Thecc.09G266000 Theobroma cacao HOM05D004148 ORTHO05D004709 2.1e-168 596.7 588 57.1
Gorai.009G080700 Gossypium raimondii HOM05D004148 ORTHO05D004709 2.7e-168 596.3 587 56.0
Gohir.A05G076400 Gossypium hirsutum HOM05D004148 ORTHO05D004709 4.3e-166 589.0 593 55.8
CANSAT54G2785 Cannabis sativa HOM05D004148 ORTHO05D004709 1.6e-165 587.0 600 54.0
Haze_23628 Corylus avellana HOM05D004148 ORTHO05D004709 5.8e-163 578.6 473 65.3
Lj2A891G11 Lonicera japonica HOM05D004148 ORTHO05D004709 1.1e-161 574.3 590 56.6
TWI60G0836 Tripterygium wilfordii HOM05D004148 ORTHO05D004709 5.4e-161 572.0 586 55.3
TAR623G1397 Trochodendron aralioides HOM05D004148 ORTHO05D004709 1.6e-152 543.9 599 52.1
Potri.009G153300 Populus trichocarpa HOM05D004148 ORTHO05D004709 7.9e-152 541.6 583 53.7
Cpa.g.sc103.97 Carica papaya HOM05D004148 ORTHO05D004709 2.6e-147 526.6 586 53.2
ClCG05G010880 Citrullus lanatus HOM05D004148 ORTHO05D004709 3.4e-147 526.2 603 49.6
Rhsim13G0199700 Rhododendron simsii HOM05D004148 ORTHO05D004709 3.4e-147 526.2 588 50.3
MELO3C020298.2 Cucumis melo HOM05D004148 ORTHO05D004709 5.8e-147 525.4 588 50.9
Nn2g14486 Nelumbo nucifera HOM05D004148 ORTHO05D004709 3.8e-146 522.7 600 50.0
Sed0012220 Sechium edule HOM05D004148 ORTHO05D004709 4.9e-146 522.3 607 49.9
VMungo1215G0285 Vigna mungo HOM05D004148 ORTHO05D004709 6.5e-146 521.9 586 50.3
CSS0039701 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 7.1e-145 518.5 453 61.6
Lj1g0011831 Lotus japonicus HOM05D004148 ORTHO05D004709 1.6e-144 517.3 572 52.6
Phvul.002G053700 Phaseolus vulgaris HOM05D004148 ORTHO05D004709 4.6e-144 515.8 589 50.3
Glyma.01G244400 Glycine max HOM05D004148 ORTHO05D004709 1.0e-143 514.6 569 51.7
CsaV3_3G017640 Cucumis sativus L. HOM05D004148 ORTHO05D004709 7.4e-142 508.4 588 49.5
PGR102G2778 Punica granatum HOM05D004148 ORTHO05D004709 9.6e-142 508.1 595 51.4
Actinidia12896 Actinidia chinensis HOM05D001400 ORTHO05D001795 4.8e-141 505.8 569 50.8
Hma1.2p1_0218F.1_g092390 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 7.6e-139 498.4 753 43.0
arahy.Tifrunner.gnm1.ann1.SF9HJV Arachis hypogaea HOM05D004148 ORTHO05D004709 4.2e-137 492.7 563 49.7
CSS0039756 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 1.3e-135 487.6 453 59.4
THA.LOC104815063 Tarenaya hassleriana HOM05D004148 ORTHO05D004709 3.3e-134 483.0 583 48.4
Lsat_1_v5_gn_5_75780 Lactuca sativa HOM05D004148 ORTHO05D004709 1.6e-133 480.7 560 50.2
Oeu048810.1 Olea europaea HOM05D004148 ORTHO05D004709 6.3e-133 478.8 575 48.9
Psat4g228400 Pisum sativum HOM05D004148 ORTHO05D004709 5.3e-132 475.7 570 50.4
EL10Ac7g16248 Beta vulgaris HOM05D004148 ORTHO05D004709 1.9e-129 467.2 604 47.5
PSO339G2294 Papaver somniferum HOM05D004148 ORTHO05D004709 1.4e-127 461.1 586 47.8
HanXRQChr03g0089821 Helianthus annuus HOM05D004148 ORTHO05D004709 1.8e-127 460.7 574 48.1
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 3.0e-127 459.9 589 48.4
CAN.G439.18 Capsicum annuum HOM05D004148 ORTHO05D004709 3.9e-127 459.5 566 48.2
Sc06g0008560 Simmondsia chinensis HOM05D004148 ORTHO05D004709 5.1e-127 459.1 582 46.4
Solyc11g071570.3 Solanum lycopersicum HOM05D004148 ORTHO05D004709 5.1e-127 459.1 574 46.7
Hund18819 Selenicereus undatus HOM05D004148 ORTHO05D004709 8.8e-127 458.4 580 47.1
Ah.15g099170 Amaranthus hybridus HOM05D004148 ORTHO05D004709 7.4e-126 455.3 584 46.2
PSO384G5014 Papaver somniferum HOM05D004148 ORTHO05D004709 2.2e-125 453.8 588 47.1
Cc00_g06190 Coffea canephora HOM05D004148 ORTHO05D004709 6.3e-125 452.2 576 46.9
Eucgr.B03795 Eucalyptus grandis HOM05D004148 ORTHO05D004709 6.3e-125 452.2 586 47.3
Nitab4.5_0000615g0090 Nicotiana tabacum HOM05D004148 ORTHO05D004709 8.2e-125 451.8 567 46.7
AUR62020189 Chenopodium quinoa HOM05D004148 ORTHO05D004709 2.4e-124 450.3 597 45.7
Aqoxy1G00551 Aquilegia oxysepala HOM05D004148 ORTHO05D004709 1.2e-123 448.0 571 46.4
CARHR108980 Cardamine hirsuta HOM05D004148 ORTHO05D004709 1.2e-123 448.0 579 45.8
Nitab4.5_0005222g0040 Nicotiana tabacum HOM05D004148 ORTHO05D004709 2.9e-122 443.4 568 46.8
Sopen11g029250 Solanum pennellii HOM05D004148 ORTHO05D004709 2.9e-122 443.4 611 44.2
Medtr5g004880 Medicago truncatula HOM05D004148 ORTHO05D004709 3.8e-122 443.0 571 46.2
Sp5g17550 Schrenkiella parvula HOM05D004148 ORTHO05D004709 1.1e-121 441.4 578 46.5
AT3G43610 Arabidopsis thaliana HOM05D004148 ORTHO05D004709 1.9e-121 440.7 567 46.7
Carub.0005s0948 Capsella rubella HOM05D004148 ORTHO05D004709 4.7e-120 436.0 575 46.3
Migut.D00721 Erythranthe guttata HOM05D004148 ORTHO05D004709 3.9e-119 433.0 577 45.9
Peaxi162Scf00217g00627 Petunia axillaris HOM05D004148 ORTHO05D004709 8.8e-119 431.8 564 46.6
Aa31LG4G13420 Aethionema arabicum HOM05D004148 ORTHO05D004709 3.3e-118 429.9 600 45.0
AL5G21540 Arabidopsis lyrata HOM05D004148 ORTHO05D004709 5.7e-118 429.1 583 46.0
MSTRG.21311 Avicennia marina HOM05D004148 ORTHO05D004709 5.7e-118 429.1 589 43.8
Thhalv10002374m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 9.7e-118 428.3 569 45.2
BcaB02g10777 Brassica carinata HOM05D004148 ORTHO05D004709 1.3e-117 427.9 572 46.7
BcaC01g02217 Brassica carinata HOM05D004148 ORTHO05D004709 1.2e-115 421.4 570 46.0
BolSC21t60233H Brassica oleracea HOM05D004148 ORTHO05D004709 5.9e-115 419.1 570 45.6
SalBow6G3333 Salvia bowleyana HOM05D004148 ORTHO05D004709 1.0e-111 408.3 585 45.5
Lalb_Chr16g0376251 Lupinus albus HOM05D004148 ORTHO05D004709 1.4e-111 407.9 512 47.7
A06p19850 Brassica napus HOM05D004148 ORTHO05D004709 3.0e-111 406.8 583 43.4
BraA06t25067Z Brassica rapa HOM05D004148 ORTHO05D004709 4.4e-110 402.9 578 44.3
C03p72000 Brassica napus HOM05D004148 ORTHO05D004709 9.7e-110 401.7 585 43.1
SGA_v2.0_scaffold29G12109 Striga asiatica HOM05D004148 ORTHO05D004709 1.7e-109 401.0 609 41.7
BcaC01g01775 Brassica carinata HOM05D004148 ORTHO05D004709 2.8e-109 400.2 585 42.9
BolC3t19498H Brassica oleracea HOM05D004148 ORTHO05D004709 3.7e-109 399.8 575 43.3
arahy.Tifrunner.gnm1.ann1.J94639 Arachis hypogaea HOM05D004148 ORTHO05D004709 2.0e-102 377.5 563 42.5
DCAR_012264 Daucus carota HOM05D000495 ORTHO05D000357 5.4e-100 369.4 408 54.4
CDE07G1769 Ceratophyllum demersum HOM05D004148 ORTHO05D004709 9.1e-100 368.6 459 47.9
ATR0697G020 Amborella trichopoda HOM05D004148 ORTHO05D004709 2.7e-99 367.1 572 42.1
FvH4_3g27031 Fragaria vesca HOM05D004148 ORTHO05D004709 5.9e-99 365.9 447 51.0
HPP92_019532 Vanilla planifolia HOM05D004148 ORTHO05D004709 4.3e-89 333.2 467 43.7
Hma1.2p1_2711F.1_g327330 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 1.2e-86 325.1 467 41.8
MBI11_g07705_MAGBIO Magnolia biondii HOM05D004148 ORTHO05D004709 1.3e-85 321.6 385 50.6
Zm00001eb073760 Zea mays HOM05D004148 ORTHO05D004709 5.0e-82 309.7 563 37.7
COL.COLO4_25330 Corchorus olitorius HOM05D004148 ORTHO05D004709 5.6e-81 306.2 295 58.6
BcaB01g00875 Brassica carinata HOM05D004148 ORTHO05D004709 1.2e-78 298.5 429 43.1
Duzib168G1551 Durio zibethinus HOM05D004148 ORTHO05D004709 1.5e-78 298.1 307 52.4
vmacro04063 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 2.7e-75 287.3 308 56.2
Carub.0005s0934 Capsella rubella HOM05D004148 ORTHO05D004709 1.5e-73 281.6 302 52.0
Manes.04G054800 Manihot esculenta HOM05D004148 ORTHO05D004709 1.5e-73 281.6 295 52.2
Ca_24340_v3 Cicer arietinum L. HOM05D004148 ORTHO05D004709 6.6e-66 256.1 298 51.0
FAN16G3212 Fragaria x ananassa HOM05D004148 ORTHO05D004709 1.2e-54 218.8 379 41.2
unitig_21.g20312 Utricularia gibba HOM05D004148 ORTHO05D004709 9.9e-54 215.7 336 40.8
A06p26680 Brassica napus HOM05D004148 ORTHO05D004709 1.9e-52 211.5 288 43.1
SHI25296 Sapria himalayana HOM05D004148 ORTHO05D004709 1.7e-50 204.9 234 50.4
Os04g0566900 Oryza sativa ssp. japonica HOM05D004148 ORTHO05D004709 6.9e-47 193.0 285 43.2
SHI25295 Sapria himalayana HOM05D004148 ORTHO05D004709 1.4e-44 185.3 179 51.4
Mapoly0099s0003 Marchantia polymorpha HOM05D004148 ORTHO05D004709 2.4e-44 184.5 490 30.8
SEGI_35526 Sequoiadendron giganteum HOM05D004148 ORTHO05D004709 7.6e-38 162.9 265 41.5
AagrBONN_evm.TU.Sc2ySwM_228.375 Anthoceros agrestis HOM05D004148 ORTHO05D004709 3.0e-34 151.0 395 31.9
vmacro04062 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 1.5e-30 138.7 260 36.5
Pp3c11_24620 Physcomitrium patens HOM05D004148 ORTHO05D004709 2.6e-30 137.9 295 32.5
Zm00001eb428880 Zea mays HOM05D004148 ORTHO05D004709 1.1e-28 132.5 543 26.3
SEGI_18042 Sequoiadendron giganteum HOM05D004148 ORTHO05D004709 1.6e-27 128.6 186 38.7
Psat6g175800 Pisum sativum HOM05D004148 ORTHO05D004709 7.9e-27 126.3 174 46.0
BolC8t48007H Brassica oleracea HOM05D004148 ORTHO05D004709 7.4e-25 119.8 196 44.9
C05p34090 Brassica napus HOM05D004148 ORTHO05D004709 1.4e-23 115.5 138 52.2
CiPaw.13G126900 Carya illinoinensis HOM05D004148 ORTHO05D004709 1.7e-21 108.6 152 47.4
CARHR148440 Cardamine hirsuta HOM05D004148 ORTHO05D004709 3.8e-21 107.5 119 50.4
CBR_g23077 Chara braunii HOM05D004148 ORTHO05D004709 2.5e-20 104.8 366 27.6
BraA06t25600Z Brassica rapa HOM05D004148 ORTHO05D004709 9.3e-20 102.8 96 53.1
A08p06640 Brassica napus HOM05D004148 ORTHO05D004709 1.1e-15 89.4 114 48.2
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 1.1e-15 89.4 206 35.9
BraA07t28462Z Brassica rapa HOM05D004148 ORTHO05D004709 2.4e-15 88.2 114 50.0
A08p03240 Brassica napus HOM05D004148 ORTHO05D004709 4.6e-11 73.9 105 49.5
BraA05t21194Z Brassica rapa HOM05D004148 ORTHO05D004709 6.1e-11 73.6 114 46.5
A09p33570 Brassica napus HOM05D004148 ORTHO05D004709 1.4e-10 72.4 105 46.7
A10p16420 Brassica napus HOM05D004148 ORTHO05D004709 1.4e-10 72.4 105 46.7
C06p15540 Brassica napus HOM05D004148 ORTHO05D004709 1.4e-10 72.4 105 46.7
C08p23060 Brassica napus HOM05D004148 ORTHO05D004709 1.4e-10 72.4 105 46.7
Haze_23627 Corylus avellana HOM05D004148 ORTHO05D004709 3.9e-10 70.9 79 50.6
A05p23300 Brassica napus HOM05D004148 ORTHO05D004709 5.1e-10 70.5 117 43.6
Thhalv10029231m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 5.1e-10 70.5 81 51.9
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 2.0e-06 58.5 112 42.9


User provided reference genes

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