Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1156500 Malus domestica HOM05D005094 ORTHO05D006271 2.1e-35 151.8 74 100.0
MD11G1174000 Malus domestica HOM05D005094 ORTHO05D006271 3.9e-29 131.0 80 83.8
Prupe.6G145600 Prunus persica HOM05D005094 ORTHO05D006271 3.9e-29 131.0 80 83.8
RcHm_v2.0_Chr7g0218521 Rosa chinensis HOM05D005094 ORTHO05D006271 6.6e-29 130.2 80 82.5
FvH4_5g27361 Fragaria vesca HOM05D005094 ORTHO05D006271 1.5e-28 129.0 80 81.2
FAN08G3356 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.5e-28 129.0 80 81.2
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.5e-28 129.0 80 81.2
FAN04G2258 Fragaria x ananassa HOM05D005925 ORTHO05D007270 4.3e-28 127.5 80 80.0
Glyma.12G189400 Glycine max HOM05D005094 ORTHO05D006271 4.3e-28 127.5 82 80.5
Ciclev10029128m.g Citrus clementina HOM05D005094 ORTHO05D006271 2.8e-27 124.8 79 79.7
Glyma.13G312400 Glycine max HOM05D005094 ORTHO05D006271 3.6e-27 124.4 82 79.3
Ca_01630_v3 Cicer arietinum L. HOM05D005094 ORTHO05D006271 1.4e-26 122.5 82 78.0
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.4e-26 122.5 86 75.6
Lj3g0019788 Lotus japonicus HOM05D005094 ORTHO05D006271 1.4e-26 122.5 82 78.0
Atru.chr3.3099 Acer truncatum HOM05D005094 ORTHO05D006271 2.4e-26 121.7 79 79.7
arahy.Tifrunner.gnm1.ann1.1B470G Arachis hypogaea HOM05D005094 ORTHO05D006271 3.1e-26 121.3 80 76.2
arahy.Tifrunner.gnm1.ann1.23FIWR Arachis hypogaea HOM05D005094 ORTHO05D006271 3.1e-26 121.3 80 76.2
Eucgr.J00577 Eucalyptus grandis HOM05D005094 ORTHO05D006271 3.1e-26 121.3 79 77.2
arahy.Tifrunner.gnm1.ann1.5LCH1K Arachis hypogaea HOM05D005094 ORTHO05D006271 4.0e-26 120.9 82 76.8
arahy.Tifrunner.gnm1.ann1.S09H8L Arachis hypogaea HOM05D005094 ORTHO05D006271 4.0e-26 120.9 82 76.8
Phvul.005G118800 Phaseolus vulgaris HOM05D005094 ORTHO05D006271 4.0e-26 120.9 82 76.8
CANSAT54G2440 Cannabis sativa HOM05D005094 ORTHO05D006271 6.9e-26 120.2 79 75.9
CiPaw.14G093900 Carya illinoinensis HOM05D005094 ORTHO05D006271 6.9e-26 120.2 80 73.8
PGR119G0969 Punica granatum HOM05D005094 ORTHO05D006271 6.9e-26 120.2 79 75.9
Hma1.2p1_0101F.1_g049550 Hydrangea macrophylla HOM05D005094 ORTHO05D006271 9.0e-26 119.8 80 76.2
TAR633G0299 Trochodendron aralioides HOM05D005094 ORTHO05D006271 9.0e-26 119.8 80 76.2
Medtr2g087520 Medicago truncatula HOM05D005094 ORTHO05D006271 1.2e-25 119.4 82 75.6
TAR636G3194 Trochodendron aralioides HOM05D005094 ORTHO05D006271 1.2e-25 119.4 79 75.9
VMungo1080G0255 Vigna mungo HOM05D005094 ORTHO05D006271 1.2e-25 119.4 82 76.8
Actinidia07282 Actinidia chinensis HOM05D005094 ORTHO05D006271 1.5e-25 119.0 79 74.7
Psat5g261040 Pisum sativum HOM05D005094 ORTHO05D006271 1.5e-25 119.0 80 77.5
Potri.001G215800 Populus trichocarpa HOM05D005094 ORTHO05D006271 2.0e-25 118.6 78 75.6
Duzib170G0543 Durio zibethinus HOM05D005094 ORTHO05D006271 2.6e-25 118.2 79 74.7
QL01p019499 Quercus lobata HOM05D005094 ORTHO05D006271 2.6e-25 118.2 79 75.9
SGA_v2.0_scaffold268G46196 Striga asiatica HOM05D005094 ORTHO05D006271 2.6e-25 118.2 82 75.6
Gohir.A05G077850 Gossypium hirsutum HOM05D005094 ORTHO05D006271 3.4e-25 117.9 80 73.8
Gohir.D05G080650 Gossypium hirsutum HOM05D005094 ORTHO05D006271 3.4e-25 117.9 80 73.8
Gorai.009G082400 Gossypium raimondii HOM05D005094 ORTHO05D006271 3.4e-25 117.9 80 73.8
DCAR_014060 Daucus carota HOM05D005094 ORTHO05D006271 4.4e-25 117.5 80 72.5
Hund18798 Selenicereus undatus HOM05D005094 ORTHO05D006271 4.4e-25 117.5 81 75.3
vmacro14320 Vaccinium macrocarpon HOM05D005094 ORTHO05D006271 4.4e-25 117.5 79 74.7
Dinv18848 Davidia involucrata HOM05D005094 ORTHO05D006271 5.8e-25 117.1 79 74.7
Lalb_Chr24g0393351 Lupinus albus HOM05D005094 ORTHO05D006271 5.8e-25 117.1 82 74.4
Potri.009G016700 Populus trichocarpa HOM05D005094 ORTHO05D006271 5.8e-25 117.1 78 75.6
Thecc.09G271300 Theobroma cacao HOM05D005094 ORTHO05D006271 5.8e-25 117.1 80 73.8
HanXRQChr03g0091071 Helianthus annuus HOM05D005094 ORTHO05D006271 9.9e-25 116.3 80 72.5
Sed0013610 Sechium edule HOM05D005094 ORTHO05D006271 9.9e-25 116.3 78 73.1
GSVIVG01037590001 Vitis vinifera HOM05D005094 ORTHO05D006271 9.9e-25 116.3 79 72.2
CAN.G1463.12 Capsicum annuum HOM05D005094 ORTHO05D006271 1.3e-24 115.9 80 75.0
Lj2A957G10 Lonicera japonica HOM05D005094 ORTHO05D006271 1.3e-24 115.9 80 71.2
Oeu058195.3 Olea europaea HOM05D005094 ORTHO05D006271 1.3e-24 115.9 80 76.2
PSO339G5010 Papaver somniferum HOM05D005094 ORTHO05D006271 1.3e-24 115.9 80 72.5
PSO384G0916 Papaver somniferum HOM05D005094 ORTHO05D006271 1.3e-24 115.9 80 72.5
Migut.N02437 Erythranthe guttata HOM05D005094 ORTHO05D006271 1.7e-24 115.5 81 75.3
HanXRQChr13g0420191 Helianthus annuus HOM05D005094 ORTHO05D006271 2.2e-24 115.2 80 71.2
Manes.04G062000 Manihot esculenta HOM05D005094 ORTHO05D006271 2.2e-24 115.2 79 74.7
MSTRG.12396 Avicennia marina HOM05D005094 ORTHO05D006271 2.9e-24 114.8 81 74.1
CSS0045075 Camellia sinensis var. sinensis HOM05D005094 ORTHO05D006271 2.9e-24 114.8 80 72.5
MELO3C015043.2 Cucumis melo HOM05D005094 ORTHO05D006271 2.9e-24 114.8 79 72.2
CsaV3_1G043920 Cucumis sativus L. HOM05D005094 ORTHO05D006271 2.9e-24 114.8 79 72.2
ECA240G4521 Erigeron canadensis HOM05D005094 ORTHO05D006271 3.8e-24 114.4 80 71.2
Lsat_1_v5_gn_3_114781 Lactuca sativa HOM05D005094 ORTHO05D006271 3.8e-24 114.4 80 72.5
Nitab4.5_0007630g0010 Nicotiana tabacum HOM05D005094 ORTHO05D006271 3.8e-24 114.4 80 73.8
Sc21g0006770 Simmondsia chinensis HOM05D005094 ORTHO05D006271 3.8e-24 114.4 79 72.2
Solyc06g073950.3 Solanum lycopersicum HOM05D005094 ORTHO05D006271 3.8e-24 114.4 80 73.8
Sopen06g030350 Solanum pennellii HOM05D005094 ORTHO05D006271 3.8e-24 114.4 80 73.8
Aa31LG1G13330 Aethionema arabicum HOM05D005094 ORTHO05D006271 4.9e-24 114.0 82 72.0
Aqoxy1G00640 Aquilegia oxysepala HOM05D005094 ORTHO05D006271 4.9e-24 114.0 78 74.4
CDE06G0118 Ceratophyllum demersum HOM05D005094 ORTHO05D006271 4.9e-24 114.0 79 72.2
TWI79G0842 Tripterygium wilfordii HOM05D005094 ORTHO05D006271 4.9e-24 114.0 80 73.8
MBI06_g20956_MAGBIO Magnolia biondii HOM05D005094 ORTHO05D006271 6.4e-24 113.6 79 72.2
THA.LOC104810936 Tarenaya hassleriana HOM05D005094 ORTHO05D006271 6.4e-24 113.6 82 72.0
Cc01_g07820 Coffea canephora HOM05D005094 ORTHO05D006271 1.1e-23 112.8 80 75.0
Oeu048825.1 Olea europaea HOM05D005094 ORTHO05D006271 1.4e-23 112.5 80 73.8
Sabra16G0127800 Salix brachista HOM05D005094 ORTHO05D006271 1.4e-23 112.5 77 71.4
AL6G33050 Arabidopsis lyrata HOM05D005094 ORTHO05D006271 2.4e-23 111.7 80 68.8
BcaB08g36455 Brassica carinata HOM05D005094 ORTHO05D006271 2.4e-23 111.7 80 68.8
BcaC04g19539 Brassica carinata HOM05D005094 ORTHO05D006271 2.4e-23 111.7 80 68.8
A10p18680 Brassica napus HOM05D005094 ORTHO05D006271 2.4e-23 111.7 80 68.8
BNapus_Darmor_BZH_scaffold_38p00890 Brassica napus HOM05D005094 ORTHO05D006271 2.4e-23 111.7 80 68.8
C09p54620 Brassica napus HOM05D005094 ORTHO05D006271 2.4e-23 111.7 80 68.8
BolC2t07135H Brassica oleracea HOM05D005094 ORTHO05D006271 2.4e-23 111.7 80 68.8
BolC9t58328H Brassica oleracea HOM05D005094 ORTHO05D006271 2.4e-23 111.7 80 68.8
BraA02t05635Z Brassica rapa HOM05D004977 ORTHO05D006454 2.4e-23 111.7 80 68.8
Peaxi162Scf00429g00211 Petunia axillaris HOM05D005094 ORTHO05D006271 2.4e-23 111.7 81 71.6
unitig_8.g3656 Utricularia gibba HOM05D005094 ORTHO05D006271 2.4e-23 111.7 81 71.6
Carub.0006s1972 Capsella rubella HOM05D005094 ORTHO05D006271 3.2e-23 111.3 80 68.8
CAN.G689.3 Capsicum annuum HOM05D005094 ORTHO05D006271 3.2e-23 111.3 80 72.5
Nitab4.5_0010585g0010 Nicotiana tabacum HOM05D005094 ORTHO05D006271 3.2e-23 111.3 79 73.4
Solyc11g071930.2 Solanum lycopersicum HOM05D005094 ORTHO05D006271 3.2e-23 111.3 80 72.5
Sopen11g029600 Solanum pennellii HOM05D005094 ORTHO05D006271 3.2e-23 111.3 80 72.5
PGSC0003DMG400002984 Solanum tuberosum HOM05D005094 ORTHO05D006271 3.2e-23 111.3 80 72.5
Thhalv10014509m.g Eutrema salsugineum HOM05D005094 ORTHO05D006271 4.2e-23 110.9 79 69.6
Mapoly0009s0161 Marchantia polymorpha HOM05D005094 ORTHO05D006271 5.4e-23 110.5 78 70.5
SMO361G0106 Selaginella moellendorffii HOM05D005094 ORTHO05D006271 5.4e-23 110.5 78 71.8
EL10Ac7g16288 Beta vulgaris HOM05D005094 ORTHO05D006271 7.1e-23 110.2 92 66.3
CARHR191450 Cardamine hirsuta HOM05D005094 ORTHO05D006271 7.1e-23 110.2 80 67.5
unitig_22.g5683 Utricularia gibba HOM05D005094 ORTHO05D006271 7.1e-23 110.2 81 71.6
AT5G22080 Arabidopsis thaliana HOM05D005094 ORTHO05D006271 9.3e-23 109.8 80 68.8
Sp6g23110 Schrenkiella parvula HOM05D005094 ORTHO05D006271 1.2e-22 109.4 80 66.2
COL.COLO4_25411 Corchorus olitorius HOM05D005094 ORTHO05D006271 1.6e-22 109.0 75 70.7
Pp3c14_160 Physcomitrium patens HOM05D005094 ORTHO05D006271 1.6e-22 109.0 78 67.9
Pp3c14_168 Physcomitrium patens HOM05D005094 ORTHO05D006271 1.6e-22 109.0 78 67.9
AUR62020223 Chenopodium quinoa HOM05D005094 ORTHO05D006271 2.7e-22 108.2 93 65.6
AagrBONN_evm.TU.Sc2ySwM_362.382 Anthoceros agrestis HOM05D005094 ORTHO05D006271 4.6e-22 107.5 80 65.0
Rhsim01G0200800 Rhododendron simsii HOM05D005094 ORTHO05D006271 4.6e-22 107.5 96 62.5
Duzib168G1065 Durio zibethinus HOM05D005094 ORTHO05D006271 1.0e-21 106.3 80 66.2
Migut.F00838 Erythranthe guttata HOM05D005094 ORTHO05D006271 1.0e-21 106.3 79 72.2
HPP92_002190 Vanilla planifolia HOM05D005094 ORTHO05D006271 1.0e-21 106.3 79 67.1
ClCG03G012000 Citrullus lanatus HOM05D005094 ORTHO05D006271 1.3e-21 105.9 73 71.2
Os03g0261500 Oryza sativa ssp. japonica HOM05D005094 ORTHO05D006271 1.7e-21 105.5 79 67.1
SalBow3G2633 Salvia bowleyana HOM05D005094 ORTHO05D006271 3.0e-21 104.8 75 73.3
BraA10t43948Z Brassica rapa HOM05D005094 ORTHO05D006271 5.1e-21 104.0 75 66.7
Zm00001eb011420 Zea mays HOM05D005094 ORTHO05D006271 8.7e-21 103.2 79 65.8
Haze_23570 Corylus avellana HOM05D005094 ORTHO05D006271 2.5e-20 101.7 92 59.8
CBR_g39052 Chara braunii HOM05D005094 ORTHO05D006271 1.6e-19 99.0 77 66.2
CDE08G0906 Ceratophyllum demersum HOM05D005094 ORTHO05D006271 2.4e-18 95.1 71 67.6
SHI25260 Sapria himalayana HOM05D005094 ORTHO05D006271 2.4e-18 95.1 80 63.8
SEGI_09358 Sequoiadendron giganteum HOM05D005094 ORTHO05D006271 3.1e-18 94.7 74 64.9
PGSC0003DMG400005935 Solanum tuberosum HOM05D005094 ORTHO05D006271 1.2e-17 92.8 94 56.4
MCO03G485 Micromonas commoda HOM05D005094 ORTHO05D006271 2.6e-17 91.7 79 57.0
BcaC03g13856 Brassica carinata HOM05D005094 ORTHO05D006271 4.9e-16 87.4 80 58.8
BcaB01g04743 Brassica carinata HOM05D005094 ORTHO05D006271 6.4e-16 87.0 104 47.1
Cre12.g557950 Chlamydomonas reinhardtii HOM05D005094 ORTHO05D006271 5.4e-15 84.0 80 56.2
PRCOL_00005229 Prasinoderma coloniale HOM05D005094 ORTHO05D006271 1.2e-14 82.8 79 50.6
Oeu058196.1 Olea europaea HOM05D005094 ORTHO05D006271 6.0e-14 80.5 58 72.4
Nn6g34655 Nelumbo nucifera HOM05D005094 ORTHO05D006271 1.8e-13 79.0 56 69.6
ATR0665G096 Amborella trichopoda HOM05D005094 ORTHO05D006271 5.1e-13 77.4 55 69.1
MELO3C000325.2 Cucumis melo HOM05D005094 ORTHO05D006271 8.7e-13 76.6 55 69.1
Nn2g14337 Nelumbo nucifera HOM05D005094 ORTHO05D006271 7.4e-12 73.6 56 66.1
Nitab4.5_0005360g0020 Nicotiana tabacum HOM05D005094 ORTHO05D006271 9.6e-12 73.2 43 76.7
AUR62001557 Chenopodium quinoa HOM05D005094 ORTHO05D006271 2.8e-11 71.6 73 53.4
SGA_v2.0_scaffold16G07505 Striga asiatica HOM05D005094 ORTHO05D006271 1.1e-07 59.7 80 46.2


User provided reference genes

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