Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 1.6e-241 839.0 413 100.0
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 2.5e-218 761.9 414 90.6
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 2.0e-167 592.8 415 74.0
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 2.5e-162 575.9 412 72.6
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 4.8e-153 545.0 409 69.2
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.4e-152 543.5 409 68.9
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 4.5e-151 538.5 409 68.5
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 3.8e-150 535.4 419 66.8
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 1.0e-139 500.7 418 65.3
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 2.0e-138 496.5 418 66.3
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 1.2e-135 487.3 440 58.9
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 2.0e-135 486.5 423 59.1
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 1.0e-134 484.2 423 59.1
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.2e-130 470.7 413 60.5
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.6e-130 469.5 413 60.5
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.6e-130 469.5 413 60.8
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 2.6e-130 469.5 413 60.8
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 2.2e-129 466.5 415 60.5
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 6.3e-129 464.9 406 59.1
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 1.8e-128 463.4 385 64.9
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.4e-128 463.0 408 60.0
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 4.1e-128 462.2 469 55.4
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 7.0e-128 461.5 448 58.0
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 3.5e-127 459.1 421 60.6
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 4.5e-127 458.8 401 60.3
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 4.5e-127 458.8 421 58.9
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 5.0e-126 455.3 401 60.1
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 1.6e-124 450.3 404 60.4
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 2.8e-124 449.5 402 59.0
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 5.2e-123 445.3 405 59.3
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 2.0e-122 443.4 415 59.3
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.2e-121 439.9 402 58.2
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 3.2e-120 436.0 400 58.2
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 1.6e-119 433.7 404 56.4
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 1.0e-118 431.0 436 55.5
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 1.7e-118 430.3 409 56.7
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 1.5e-117 427.2 386 59.3
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 7.3e-117 424.9 412 55.6
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.6e-116 423.7 403 54.8
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 2.1e-116 423.3 410 55.9
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 2.1e-116 423.3 405 56.5
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 4.7e-116 422.2 411 54.7
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 6.2e-116 421.8 401 57.1
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 2.6e-114 416.4 405 54.8
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 1.7e-113 413.7 411 53.5
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 3.7e-113 412.5 379 57.8
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 6.4e-113 411.8 397 57.9
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 8.3e-113 411.4 409 54.3
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 1.1e-112 411.0 400 53.8
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 2.4e-112 409.8 408 53.9
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 4.1e-112 409.1 407 54.3
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 1.6e-111 407.1 415 52.5
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 1.6e-111 407.1 497 48.7
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 2.0e-111 406.8 448 52.7
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 3.5e-111 406.0 410 54.4
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 4.6e-111 405.6 422 54.5
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 5.0e-110 402.1 410 53.2
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 1.1e-109 401.0 416 52.6
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 1.1e-109 401.0 416 52.6
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 3.3e-109 399.4 407 53.1
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 4.3e-109 399.1 414 50.5
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 7.3e-109 398.3 416 49.8
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 9.5e-109 397.9 402 53.2
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 1.6e-108 397.1 405 53.3
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 2.8e-108 396.4 415 53.0
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 3.6e-108 396.0 409 53.1
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 3.6e-108 396.0 409 53.1
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 1.1e-107 394.4 412 52.4
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 4.0e-107 392.5 405 53.3
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 6.8e-107 391.7 407 51.8
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 4.9e-105 385.6 397 53.4
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.1e-104 382.5 276 67.8
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 5.4e-104 382.1 427 50.6
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 4.6e-103 379.0 409 53.1
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 1.7e-102 377.1 433 50.3
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 3.9e-102 375.9 305 61.0
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 5.1e-102 375.6 408 51.5
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 5.1e-102 375.6 364 55.5
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 3.3e-101 372.9 388 52.8
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 9.5e-101 371.3 319 60.5
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 1.6e-100 370.5 398 53.3
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 2.8e-100 369.8 406 49.5
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 5.2e-99 365.5 402 50.0
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 5.2e-99 365.5 402 50.2
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 1.2e-98 364.4 408 51.2
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 4.9e-97 359.0 311 59.2
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 4.9e-97 359.0 458 46.1
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 1.9e-96 357.1 394 50.3
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 1.9e-96 357.1 402 51.2
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 2.4e-96 356.7 307 59.6
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 5.4e-96 355.5 423 48.9
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 7.1e-96 355.1 409 50.4
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 7.1e-96 355.1 402 51.0
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 1.2e-95 354.4 369 51.8
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 2.3e-94 350.1 253 67.6
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 5.6e-93 345.5 413 48.7
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 8.1e-92 341.7 417 48.4
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 6.8e-91 338.6 421 48.7
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 1.3e-89 334.3 427 45.0
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 2.2e-89 333.6 419 47.5
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 2.4e-88 330.1 414 47.1
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 1.6e-87 327.4 522 41.6
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 1.0e-86 324.7 427 43.3
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 2.5e-85 320.1 278 57.9
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 2.8e-84 316.6 278 57.6
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 2.8e-84 316.6 278 57.6
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 6.9e-83 312.0 280 57.5
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 6.9e-83 312.0 280 57.5
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 1.3e-81 307.8 395 46.8
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.2e-79 301.2 289 55.4
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 1.0e-78 298.1 405 44.7
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 9.3e-72 275.0 303 51.8
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 7.4e-69 265.4 236 57.6
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 1.3e-68 264.6 438 39.3
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 6.2e-68 262.3 320 49.4
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 5.3e-67 259.2 256 52.3
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 6.9e-67 258.8 284 50.7
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 1.1e-64 251.5 340 45.3
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 1.9e-64 250.8 320 45.6
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 5.1e-62 242.7 167 71.9
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 9.6e-61 238.4 280 46.4
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 1.0e-54 218.4 289 41.5
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 1.3e-54 218.0 191 57.6
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 4.8e-52 209.5 282 42.2
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 8.5e-49 198.7 254 45.3
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 3.0e-46 190.3 171 57.3
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 9.7e-45 185.3 284 39.4
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 6.9e-43 179.1 149 61.1
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 1.5e-42 177.9 290 40.0
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.0e-42 177.6 135 66.7
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 1.9e-40 171.0 123 66.7
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 4.2e-40 169.9 245 38.8
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 1.6e-39 167.9 285 36.5
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 4.1e-35 153.3 189 48.7
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.7e-33 147.9 107 67.3
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 6.1e-31 139.4 213 43.7
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.0e-30 138.7 185 41.1
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 3.0e-30 137.1 185 41.1
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.4e-29 133.3 105 63.8
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 2.4e-27 127.5 107 55.1
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 3.1e-27 127.1 94 69.1
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 8.5e-25 119.0 221 39.8
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 2.5e-24 117.5 70 75.7
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.6e-21 107.5 63 73.0
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.7e-20 103.6 68 66.2
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 2.4e-19 100.9 127 51.2
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 9.1e-19 99.0 266 28.2
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 1.2e-18 98.6 77 63.6
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 3.5e-18 97.1 184 37.5
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.7e-17 94.7 55 74.5
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 1.1e-16 92.0 78 59.0
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.1e-15 86.3 49 71.4
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.0e-14 85.5 166 38.6
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 9.8e-13 79.0 96 46.9
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.7e-12 77.0 54 70.4
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.3e-12 75.9 54 68.5
Nitab4.5_0003792g0060 Nicotiana tabacum HOM05D004413 ORTHO05D005199 4.5e-10 70.1 88 43.2
Atru.chr1.1384 Acer truncatum HOM05D004413 ORTHO05D005199 5.9e-10 69.7 92 48.9
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.7e-09 68.2 46 60.9
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.5e-08 64.3 49 65.3


User provided reference genes

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