Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1290300 Malus domestica HOM05D005955 ORTHO05D007633 3.5e-149 531.6 264 100.0
Prupe.2G032200 Prunus persica HOM05D005955 ORTHO05D007633 4.1e-121 438.3 265 83.0
RcHm_v2.0_Chr1g0322011 Rosa chinensis HOM05D005955 ORTHO05D007633 3.2e-118 428.7 262 81.7
FAN10G0293 Fragaria x ananassa HOM05D005955 ORTHO05D007633 6.1e-117 424.5 265 80.0
FvH4_7g02750 Fragaria vesca HOM05D005955 ORTHO05D007633 8.8e-116 420.6 257 81.3
FAN06G1602 Fragaria x ananassa HOM05D005955 ORTHO05D007633 8.8e-116 420.6 257 81.3
FAN03G1179 Fragaria x ananassa HOM05D005955 ORTHO05D007633 1.1e-113 413.7 256 79.3
CiPaw.13G012200 Carya illinoinensis HOM05D005955 ORTHO05D007633 1.2e-112 410.2 254 79.5
QL04p014297 Quercus lobata HOM05D005955 ORTHO05D007633 1.0e-111 407.1 258 77.5
Eucgr.G03245 Eucalyptus grandis HOM05D005955 ORTHO05D007633 1.6e-109 399.8 252 78.2
TWI63G0596 Tripterygium wilfordii HOM05D005955 ORTHO05D007633 4.7e-109 398.3 262 75.6
GSVIVG01000659001 Vitis vinifera HOM05D005955 ORTHO05D007633 6.1e-109 397.9 256 76.2
Phvul.005G029600 Phaseolus vulgaris HOM05D005955 ORTHO05D007633 3.9e-108 395.2 252 76.6
Potri.001G025601 Populus trichocarpa HOM05D005955 ORTHO05D007633 5.1e-108 394.8 244 77.5
Atru.chr12.1378 Acer truncatum HOM05D005955 ORTHO05D007633 1.1e-107 393.7 260 73.8
Haze_03068 Corylus avellana HOM05D005955 ORTHO05D007633 1.1e-107 393.7 263 77.2
Glyma.11G154400 Glycine max HOM05D005955 ORTHO05D007633 1.1e-107 393.7 254 76.8
Ciclev10005678m.g Citrus clementina HOM05D005955 ORTHO05D007633 1.5e-107 393.3 260 74.6
Dinv09262 Davidia involucrata HOM05D005955 ORTHO05D007633 2.2e-106 389.4 255 76.5
Sabra01G0018900 Salix brachista HOM05D005955 ORTHO05D007633 3.7e-106 388.7 244 76.2
Psat5g219280 Pisum sativum HOM05D005955 ORTHO05D007633 4.8e-106 388.3 248 77.8
Manes.11G004000 Manihot esculenta HOM05D005955 ORTHO05D007633 6.3e-106 387.9 244 77.5
TAR369G0753 Trochodendron aralioides HOM05D005955 ORTHO05D007633 1.1e-105 387.1 263 74.5
arahy.Tifrunner.gnm1.ann1.RGX0XE Arachis hypogaea HOM05D005955 ORTHO05D007633 3.1e-105 385.6 257 73.2
Cpa.g.sc223.13 Carica papaya HOM05D005955 ORTHO05D007633 3.1e-105 385.6 264 73.9
CSS0025918 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 4.1e-105 385.2 257 75.5
Lalb_Chr04g0264041 Lupinus albus HOM05D005955 ORTHO05D007633 4.1e-105 385.2 259 74.5
Gohir.D04G014500 Gossypium hirsutum HOM05D005955 ORTHO05D007633 7.0e-105 384.4 256 75.0
Thecc.10G166400 Theobroma cacao HOM05D005955 ORTHO05D007633 1.2e-104 383.6 259 74.5
VMungo1080G1708 Vigna mungo HOM05D005955 ORTHO05D007633 1.2e-104 383.6 229 80.8
Duzib128G0282 Durio zibethinus HOM05D005955 ORTHO05D007633 1.6e-104 383.3 258 75.2
THA.LOC104824190 Tarenaya hassleriana HOM05D005955 ORTHO05D007633 1.6e-104 383.3 253 73.9
Peaxi162Scf01732g00026 Petunia axillaris HOM05D005955 ORTHO05D007633 4.5e-104 381.7 255 74.9
Sopen11g001560 Solanum pennellii HOM05D005955 ORTHO05D007633 4.5e-104 381.7 255 72.5
Ca_27127_v3 Cicer arietinum L. HOM05D005955 ORTHO05D007633 7.7e-104 380.9 260 73.8
Hma1.2p1_1251F.1_g270440 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 7.7e-104 380.9 256 75.8
Medtr3g017610 Medicago truncatula HOM05D005955 ORTHO05D007633 7.7e-104 380.9 262 73.3
MBI13_g36285_MAGBIO Magnolia biondii HOM05D005955 ORTHO05D007633 1.3e-103 380.2 256 72.7
BcaB02g08444 Brassica carinata HOM05D005955 ORTHO05D007633 2.2e-103 379.4 274 70.4
Solyc11g005590.1 Solanum lycopersicum HOM05D005955 ORTHO05D007633 2.9e-103 379.0 255 71.4
Actinidia02255 Actinidia chinensis HOM05D005955 ORTHO05D007633 5.0e-103 378.3 248 76.2
Rhsim01G0123700 Rhododendron simsii HOM05D005955 ORTHO05D007633 1.1e-102 377.1 258 72.1
PGSC0003DMG401003979 Solanum tuberosum HOM05D005955 ORTHO05D007633 1.5e-102 376.7 255 71.8
A04p05350 Brassica napus HOM05D005955 ORTHO05D007633 1.9e-102 376.3 257 73.2
ClCG05G026720 Citrullus lanatus HOM05D005955 ORTHO05D007633 3.2e-102 375.6 260 71.9
CANSAT56G4499 Cannabis sativa HOM05D005955 ORTHO05D007633 7.2e-102 374.4 255 75.7
CsaV3_5G036650 Cucumis sativus L. HOM05D005955 ORTHO05D007633 7.2e-102 374.4 260 71.2
Nitab4.5_0001681g0050 Nicotiana tabacum HOM05D005955 ORTHO05D007633 7.2e-102 374.4 255 72.2
Aa31sc434G20 Aethionema arabicum HOM05D005955 ORTHO05D007633 2.1e-101 372.9 256 70.3
vmacro12691 Vaccinium macrocarpon HOM05D005955 ORTHO05D007633 2.1e-101 372.9 258 72.9
BraA04t16235Z Brassica rapa HOM05D005955 ORTHO05D007633 2.7e-101 372.5 259 72.6
Cfa010889 Carpinus fangiana HOM05D005955 ORTHO05D007633 4.7e-101 371.7 222 82.4
Gorai.012G017000 Gossypium raimondii HOM05D005955 ORTHO05D007633 4.7e-101 371.7 283 68.2
Thhalv10010628m.g Eutrema salsugineum HOM05D005955 ORTHO05D007633 6.1e-101 371.3 268 68.7
Sp5g07940 Schrenkiella parvula HOM05D005955 ORTHO05D007633 8.0e-101 370.9 268 68.7
Aqoxy2G00337 Aquilegia oxysepala HOM05D005955 ORTHO05D007633 1.0e-100 370.5 247 74.5
PGR031G3892 Punica granatum HOM05D005955 ORTHO05D007633 1.0e-100 370.5 263 71.5
Cc02_g29700 Coffea canephora HOM05D005955 ORTHO05D007633 1.4e-100 370.2 261 71.6
AL5G35530 Arabidopsis lyrata HOM05D005955 ORTHO05D007633 1.8e-100 369.8 270 68.5
Gohir.A05G401400 Gossypium hirsutum HOM05D005955 ORTHO05D007633 1.8e-100 369.8 246 74.8
BcaC02g09066 Brassica carinata HOM05D005955 ORTHO05D007633 4.0e-100 368.6 259 72.2
C04p38040 Brassica napus HOM05D005955 ORTHO05D007633 4.0e-100 368.6 259 72.2
Sed0001833 Sechium edule HOM05D005955 ORTHO05D007633 1.1e-99 367.1 231 76.2
Gohir.D04G013700 Gossypium hirsutum HOM05D005955 ORTHO05D007633 1.5e-99 366.7 284 68.0
A09p47410 Brassica napus HOM05D005955 ORTHO05D007633 5.7e-99 364.8 259 71.4
AT3G54480 Arabidopsis thaliana HOM05D005955 ORTHO05D007633 9.7e-99 364.0 270 67.0
EL10Ac2g02824 Beta vulgaris HOM05D005955 ORTHO05D007633 2.2e-98 362.8 257 70.0
BolC8t50576H Brassica oleracea HOM05D005955 ORTHO05D007633 2.2e-98 362.8 259 71.0
TPR.G17810 Trifolium pratense HOM05D005955 ORTHO05D007633 2.2e-98 362.8 263 70.3
C08p29670 Brassica napus HOM05D005955 ORTHO05D007633 2.8e-98 362.5 256 71.9
MSTRG.5061 Avicennia marina HOM05D005955 ORTHO05D007633 3.7e-98 362.1 244 74.2
Carub.0005s2110 Capsella rubella HOM05D005955 ORTHO05D007633 3.7e-98 362.1 267 67.0
Migut.O00720 Erythranthe guttata HOM05D005955 ORTHO05D007633 4.8e-98 361.7 245 75.9
BcaB01g00190 Brassica carinata HOM05D005955 ORTHO05D007633 6.3e-98 361.3 261 70.1
SGA_v2.0_scaffold232G43514 Striga asiatica HOM05D005955 ORTHO05D007633 6.3e-98 361.3 244 73.4
Migut.N01830 Erythranthe guttata HOM05D005955 ORTHO05D007633 1.1e-97 360.5 245 75.9
AUR62026845 Chenopodium quinoa HOM05D005955 ORTHO05D007633 5.3e-97 358.2 256 69.5
ECA248G0357 Erigeron canadensis HOM05D005955 ORTHO05D007633 7.0e-97 357.8 246 72.4
HanXRQChr11g0341831 Helianthus annuus HOM05D005955 ORTHO05D007633 9.1e-97 357.5 245 73.1
unitig_8.g4774 Utricularia gibba HOM05D005955 ORTHO05D007633 2.0e-96 356.3 231 75.8
Nitab4.5_0000320g0120 Nicotiana tabacum HOM05D005955 ORTHO05D007633 2.5e-94 349.4 323 57.9
PSO339G4535 Papaver somniferum HOM05D005955 ORTHO05D007633 9.4e-94 347.4 268 66.0
Hund15721 Selenicereus undatus HOM05D005955 ORTHO05D007633 2.7e-93 345.9 335 57.3
Lj3g0013196 Lotus japonicus HOM05D005955 ORTHO05D007633 3.6e-93 345.5 256 68.4
HPP92_025011 Vanilla planifolia HOM05D005955 ORTHO05D007633 1.4e-92 343.6 255 66.3
Zm00001eb329830 Zea mays HOM05D005955 ORTHO05D007633 1.8e-92 343.2 227 70.5
PSO384G0859 Papaver somniferum HOM05D005955 ORTHO05D007633 5.2e-92 341.7 274 64.2
ATR0075G002 Amborella trichopoda HOM05D005955 ORTHO05D007633 1.5e-91 340.1 246 68.7
CAN.G476.5 Capsicum annuum HOM05D005955 ORTHO05D007633 4.4e-91 338.6 208 76.9
CSS0041352 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 9.8e-91 337.4 212 78.3
Sc10g0004360 Simmondsia chinensis HOM05D005955 ORTHO05D007633 1.7e-90 336.7 213 76.5
DCAR_031830 Daucus carota HOM05D005955 ORTHO05D007633 4.8e-90 335.1 210 76.2
COL.COLO4_21458 Corchorus olitorius HOM05D005955 ORTHO05D007633 2.4e-89 332.8 208 76.4
Lj7A580T60 Lonicera japonica HOM05D005955 ORTHO05D007633 1.2e-88 330.5 216 77.8
Ah.10g030640 Amaranthus hybridus HOM05D000390 ORTHO05D000577 1.6e-88 330.1 236 70.8
Lsat_1_v5_gn_1_114801 Lactuca sativa HOM05D005955 ORTHO05D007633 2.7e-88 329.3 245 70.2
Oeu015683.2 Olea europaea HOM05D005955 ORTHO05D007633 2.2e-87 326.2 211 75.8
Nn2g14899 Nelumbo nucifera HOM05D005955 ORTHO05D007633 2.9e-87 325.9 202 79.2
MELO3C012462.2 Cucumis melo HOM05D005955 ORTHO05D007633 3.8e-87 325.5 218 72.5
Hma1.2p1_1251F.1_g270450 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 2.0e-83 313.2 199 78.9
arahy.Tifrunner.gnm1.ann1.NJCB22 Arachis hypogaea HOM05D005955 ORTHO05D007633 2.6e-75 286.2 304 52.6
Os07g0659700 Oryza sativa ssp. japonica HOM05D005955 ORTHO05D007633 3.4e-75 285.8 197 69.5
SEGI_28535 Sequoiadendron giganteum HOM05D005955 ORTHO05D007633 5.9e-72 275.0 226 61.9
Atru.chr12.1174 Acer truncatum HOM05D005955 ORTHO05D007633 1.9e-70 270.0 174 75.3
Dinv09283 Davidia involucrata HOM05D005955 ORTHO05D007633 5.2e-68 261.9 167 79.0
AagrBONN_evm.TU.Sc2ySwM_344.4523 Anthoceros agrestis HOM05D005955 ORTHO05D007633 1.6e-64 250.4 228 53.1
SMO172G0212 Selaginella moellendorffii HOM05D005955 ORTHO05D007633 2.0e-59 233.4 251 47.8
Pp3c5_2560 Physcomitrium patens HOM05D005955 ORTHO05D007633 1.1e-57 227.6 224 52.2
CDE12G0962 Ceratophyllum demersum HOM05D005955 ORTHO05D007633 1.6e-56 223.8 151 72.2
Manes.08G167250 Manihot esculenta HOM05D005955 ORTHO05D007633 6.2e-53 211.8 133 76.7
BraA09t40201Z Brassica rapa HOM05D005955 ORTHO05D007633 2.2e-50 203.4 149 69.1
CBR_g30624 Chara braunii HOM05D005955 ORTHO05D007633 2.2e-50 203.4 227 48.5
BolC8t50572H Brassica oleracea HOM05D005955 ORTHO05D007633 1.9e-49 200.3 149 68.5
AUR62037202 Chenopodium quinoa HOM05D005955 ORTHO05D007633 7.1e-49 198.4 137 71.5
BolC8t50570H Brassica oleracea HOM05D005955 ORTHO05D007633 9.2e-49 198.0 149 67.8
Ciclev10002701m.g Citrus clementina HOM05D005955 ORTHO05D007633 3.1e-44 183.0 117 77.8
Manes.11G001251 Manihot esculenta HOM05D005955 ORTHO05D007633 3.4e-43 179.5 114 76.3
CARHR164380 Cardamine hirsuta HOM05D005955 ORTHO05D007633 4.2e-41 172.6 123 69.1
AUR62037203 Chenopodium quinoa HOM05D005955 ORTHO05D007633 4.6e-40 169.1 116 70.7
Psat7g193960 Pisum sativum HOM05D005955 ORTHO05D007633 7.6e-35 151.8 96 78.1
C08p29620 Brassica napus HOM05D005955 ORTHO05D007633 2.4e-33 146.7 75 92.0
CANSAT01G1797 Cannabis sativa HOM05D005955 ORTHO05D007633 1.7e-31 140.6 95 73.7
Nn8g40481 Nelumbo nucifera HOM05D005955 ORTHO05D007633 3.8e-26 122.9 78 70.5
Migut.N01795 Erythranthe guttata HOM05D005955 ORTHO05D007633 1.4e-20 104.4 110 57.3
TPR.G7208 Trifolium pratense HOM05D005955 ORTHO05D007633 2.5e-17 93.6 47 85.1
BcaC08g45413 Brassica carinata HOM05D005955 ORTHO05D007633 3.0e-15 86.7 114 47.4
BcaB05g22681 Brassica carinata HOM05D005955 ORTHO05D007633 2.5e-14 83.6 114 46.5
PRCOL_00001745 Prasinoderma coloniale HOM05D005955 ORTHO05D007633 1.5e-11 74.3 250 24.4


User provided reference genes

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