Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 2371.3 1114 100.0
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 2085.5 1112 86.7
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 2034.2 1111 84.2
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 2031.9 1111 84.1
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 2003.4 1123 82.8
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1964.9 1117 81.9
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1952.2 1112 82.6
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1942.2 1111 79.5
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1936.4 1113 79.7
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1924.1 1111 80.8
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1917.5 1116 79.0
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1915.6 1114 78.2
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1900.6 1114 78.0
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1898.6 1114 77.7
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1897.1 1114 77.7
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1893.6 1114 77.1
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1875.5 1114 76.5
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1874.8 1096 77.6
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1862.0 1115 76.8
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1857.4 1112 75.6
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1851.3 1109 76.0
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1841.6 1112 75.4
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1823.9 1099 75.7
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1820.1 1067 76.9
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1816.6 1113 73.7
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1816.6 1096 74.5
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1808.1 1110 74.1
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1806.2 1111 73.0
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1805.4 1112 73.7
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1800.4 1116 74.1
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1795.8 1112 72.1
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1795.8 1223 68.9
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1794.2 1119 72.3
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1790.4 1114 72.4
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1785.4 1107 72.0
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1776.5 1111 72.9
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1774.6 1110 72.1
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1773.8 1114 71.8
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1772.7 1111 71.9
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1772.3 1109 71.5
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1772.3 1109 71.4
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1770.7 1113 71.9
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1770.4 1111 71.7
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1767.3 1108 71.2
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1766.9 1109 71.8
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1766.5 1108 71.3
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1765.7 1113 71.3
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1765.7 1120 71.1
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1765.0 1111 72.0
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1763.8 1123 72.3
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1760.7 1098 72.3
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1760.7 1100 72.1
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1760.3 1109 71.1
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1760.0 1111 71.3
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1758.8 1108 70.9
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1758.8 1101 71.8
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1758.4 1111 71.0
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1758.0 989 81.4
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1758.0 1120 71.0
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1756.9 1109 71.4
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1755.7 1103 71.7
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1755.0 1111 70.7
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1747.6 1122 70.6
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1746.5 1112 71.1
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1743.4 1103 71.5
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1741.9 1067 74.0
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1739.9 1102 71.5
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1720.3 1068 72.3
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1710.3 1110 69.3
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1706.4 1102 70.1
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1704.9 1110 69.5
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1704.5 1110 69.1
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1703.7 1110 69.4
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1692.2 1100 69.7
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1689.5 1103 69.3
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1688.3 1119 68.5
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1681.4 1109 69.4
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1663.7 1135 66.9
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1653.3 1124 67.6
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1647.5 1121 66.5
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1638.6 1119 67.3
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1627.8 1104 67.8
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1606.3 1107 65.0
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1564.7 1160 64.5
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1548.1 995 70.9
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1536.5 915 76.5
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1526.1 1075 64.6
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1518.4 897 78.6
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1371.3 831 76.2
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1359.4 835 73.7
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1344.7 1034 60.9
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1327.4 1133 54.9
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1326.2 1116 55.6
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1302.3 750 77.7
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1268.4 1107 54.3
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1241.1 744 74.7
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1230.7 759 74.3
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1176.4 1135 50.4
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1170.2 689 79.5
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 0.0e+00 1158.3 666 78.1
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 0.0e+00 1084.3 1128 48.6
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 2.2e-261 906.4 680 62.5
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 1.3e-245 854.0 498 77.9
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 7.0e-231 805.1 568 63.9
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 5.9e-222 775.4 518 68.0
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 1.5e-220 770.8 518 68.0
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 3.5e-166 590.1 1503 29.7
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 4.5e-153 546.6 599 47.4
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 7.6e-153 545.8 385 67.0
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 3.9e-141 506.9 283 81.6
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 5.0e-128 463.4 1109 31.6
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 1.9e-119 434.9 240 81.7
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 2.5e-111 407.9 272 70.6
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 1.6e-110 405.2 598 38.1
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 1.3e-96 359.0 195 80.0
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 9.5e-95 352.8 204 79.9
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 3.4e-92 344.4 174 92.0
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 2.7e-89 334.7 258 59.3
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 9.8e-84 316.2 164 92.7
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.0e-80 306.2 208 68.8
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 2.4e-66 258.5 156 71.8
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 2.4e-61 241.9 125 87.2
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 5.2e-61 240.7 208 53.8
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 2.6e-60 238.4 130 78.5
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 6.9e-45 187.2 122 71.3
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 2.1e-38 165.6 190 45.3
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 2.4e-37 162.2 173 47.4
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 4.5e-36 157.9 136 51.5
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 2.9e-35 155.2 182 45.6
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 1.9e-34 152.5 142 51.4
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 7.1e-34 150.6 136 52.2
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 2.1e-33 149.1 96 74.0
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 7.9e-33 147.1 118 54.2
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 3.9e-32 144.8 85 74.1
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 1.9e-31 142.5 82 74.4
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 4.3e-31 141.4 141 53.9
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 4.8e-30 137.9 132 51.5
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.4e-29 136.3 92 60.9
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 1.6e-25 122.9 118 55.9
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 4.3e-23 114.8 66 71.2
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 4.1e-21 108.2 53 86.8
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 2.9e-19 102.1 100 52.0
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 7.2e-18 97.4 136 43.4
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 1.2e-17 96.7 101 47.5
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 2.1e-17 95.9 84 51.2
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 2.7e-17 95.5 45 82.2
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 2.7e-17 95.5 45 82.2
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 1.8e-16 92.8 45 82.2
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 3.0e-16 92.0 71 57.7
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 1.5e-15 89.7 45 77.8
Cfa026367 Carpinus fangiana HOM05D005112 ORTHO05D123685 4.5e-12 78.2 379 24.5
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 1.3e-11 76.6 50 66.0
BcaC08g43326 Brassica carinata HOM05D005112 ORTHO05D006681 3.8e-11 75.1 61 55.7
FAN12G0942 Fragaria x ananassa HOM05D018336 ORTHO05D006090 6.7e-08 64.3 47 66.0
CSS0027518 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D111919 1.7e-06 59.7 28 89.3
Lsat_1_v5_gn_5_181001 Lactuca sativa HOM05D005112 ORTHO05D006681 3.7e-06 58.5 90 36.7


User provided reference genes

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