Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 3.2e-177 625.9 381 100.0
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 1.1e-161 574.3 353 94.1
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 1.6e-152 543.9 355 79.7
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 4.1e-140 502.7 354 70.3
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 1.9e-137 493.8 356 68.3
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 3.0e-135 486.5 356 67.4
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 6.7e-135 485.3 356 66.9
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 3.7e-133 479.6 356 66.0
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 2.0e-126 457.2 315 70.8
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 8.5e-122 441.8 346 64.5
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.5e-121 441.0 342 67.8
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 1.9e-121 440.7 346 67.3
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 2.5e-121 440.3 339 65.8
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 1.0e-119 434.9 340 70.0
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 4.0e-119 433.0 343 62.4
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 1.4e-116 424.5 343 69.1
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 2.2e-114 417.2 343 73.8
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 3.8e-114 416.4 348 72.7
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 5.0e-114 416.0 339 61.1
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 5.0e-114 416.0 337 64.1
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 8.5e-114 415.2 340 63.5
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 1.9e-113 414.1 339 59.6
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 2.5e-113 413.7 347 58.5
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 3.2e-113 413.3 353 70.5
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 1.2e-112 411.4 341 63.6
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 2.7e-112 410.2 345 60.3
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 2.7e-112 410.2 339 61.1
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 1.4e-111 407.9 335 61.5
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 1.8e-111 407.5 344 70.1
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 8.8e-111 405.2 340 61.2
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.2e-110 404.8 340 62.9
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 3.4e-110 403.3 345 59.4
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 2.2e-109 400.6 343 67.9
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 4.9e-109 399.4 353 68.3
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 6.3e-109 399.1 344 56.1
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 6.3e-109 399.1 343 58.6
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 1.1e-108 398.3 342 57.0
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.4e-108 397.9 348 60.3
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 2.4e-108 397.1 341 60.1
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 7.7e-107 392.1 346 56.1
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 7.7e-107 392.1 346 56.9
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 1.3e-106 391.3 336 57.1
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 1.3e-106 391.3 342 56.7
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 2.9e-106 390.2 340 55.9
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 5.0e-106 389.4 342 67.0
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 5.0e-106 389.4 340 58.8
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 6.6e-106 389.0 332 68.4
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 1.1e-105 388.3 342 67.0
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 1.1e-105 388.3 340 55.6
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.1e-105 388.3 339 57.2
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 1.9e-105 387.5 351 58.4
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 2.5e-105 387.1 339 56.9
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 5.6e-105 386.0 351 65.8
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 7.3e-105 385.6 347 65.7
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 7.3e-105 385.6 341 57.2
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 1.6e-104 384.4 342 56.7
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 1.6e-104 384.4 348 55.2
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 4.7e-104 382.9 382 54.5
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 6.1e-104 382.5 332 68.1
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 1.4e-103 381.3 323 69.3
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 1.8e-103 380.9 340 67.1
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 8.9e-103 378.6 340 66.8
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 8.9e-103 378.6 341 53.4
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 2.0e-102 377.5 342 54.1
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 2.6e-102 377.1 338 56.2
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 5.7e-102 375.9 340 54.7
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 2.2e-101 374.0 308 57.5
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 3.7e-101 373.2 338 55.6
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 8.3e-101 372.1 309 59.9
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.4e-100 371.3 312 59.6
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 1.8e-100 370.9 349 56.2
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 1.8e-100 370.9 340 55.9
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 1.6e-99 367.9 342 52.0
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 2.7e-99 367.1 313 57.2
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 2.7e-99 367.1 339 52.8
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 2.7e-99 367.1 351 63.0
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 2.7e-99 367.1 309 64.4
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 2.7e-99 367.1 342 64.6
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 3.5e-99 366.7 344 55.8
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 4.6e-99 366.3 343 53.4
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 5.9e-99 365.9 349 51.9
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 2.3e-98 364.0 349 51.9
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 5.0e-98 362.8 342 52.0
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 6.6e-98 362.5 349 51.3
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 8.6e-98 362.1 343 63.3
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 8.6e-98 362.1 343 63.6
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 1.1e-97 361.7 307 59.0
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 1.5e-97 361.3 328 64.0
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 5.6e-97 359.4 343 63.6
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 3.6e-96 356.7 334 56.0
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 4.7e-96 356.3 348 54.0
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 4.7e-96 356.3 346 55.5
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 8.0e-96 355.5 339 52.2
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 1.0e-95 355.1 339 52.2
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 1.0e-95 355.1 342 63.2
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 1.0e-95 355.1 342 63.2
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.4e-95 354.8 325 56.6
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 1.8e-95 354.4 337 57.6
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 3.1e-95 353.6 323 64.7
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 3.1e-95 353.6 343 52.2
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 4.0e-95 353.2 342 62.3
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 8.9e-95 352.1 325 58.8
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 1.5e-94 351.3 309 58.3
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 4.4e-94 349.7 323 64.4
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 5.8e-94 349.4 342 50.0
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 3.7e-93 346.7 335 52.5
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 4.9e-93 346.3 342 53.2
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 1.4e-92 344.7 342 50.0
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 3.2e-92 343.6 338 52.4
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 5.4e-92 342.8 349 52.7
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 5.4e-92 342.8 214 73.8
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 5.4e-92 342.8 346 50.0
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 9.2e-92 342.0 213 74.6
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 6.0e-91 339.3 344 49.4
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 1.3e-90 338.2 339 49.6
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 1.7e-90 337.8 352 59.7
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 2.3e-90 337.4 347 51.0
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 3.9e-90 336.7 353 51.8
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 5.0e-90 336.3 320 51.9
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 8.6e-90 335.5 336 51.2
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 1.1e-89 335.1 336 51.2
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 3.3e-89 333.6 346 52.3
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 5.6e-89 332.8 340 50.0
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 7.3e-89 332.4 347 52.2
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 1.6e-88 331.3 335 50.1
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 1.6e-88 331.3 347 51.9
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 8.1e-88 328.9 335 49.9
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 8.1e-88 328.9 340 49.4
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 1.2e-86 325.1 349 48.1
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.1e-81 308.5 348 47.1
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 7.3e-81 305.8 215 66.0
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.6e-80 304.7 323 59.4
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 2.3e-79 300.8 394 41.9
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.5e-73 281.6 276 58.0
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 1.9e-73 281.2 276 67.4
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 1.9e-73 281.2 271 53.5
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 3.3e-73 280.4 311 47.6
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 6.2e-72 276.2 289 47.8
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 2.4e-68 264.2 271 48.7
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 8.1e-64 249.2 321 41.1
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 3.9e-58 230.3 192 55.7
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 2.5e-57 227.6 322 44.7
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 7.4e-57 226.1 313 46.6
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 9.6e-57 225.7 313 47.0
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 1.6e-56 224.9 322 51.2
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.5e-54 218.4 313 43.5
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 6.4e-53 213.0 326 37.4
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 5.5e-52 209.9 325 35.7
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 1.1e-47 195.7 346 35.0
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 1.5e-46 191.8 137 65.7
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 8.4e-45 186.0 293 37.2
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 7.9e-43 179.5 221 44.3
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 3.9e-42 177.2 149 53.0
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.8e-40 171.0 316 36.4
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.8e-40 171.0 316 36.4
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 8.2e-40 169.5 338 32.2
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 3.1e-39 167.5 311 32.5
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 1.5e-38 165.2 316 31.3
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 2.0e-38 164.9 118 66.9
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 1.9e-36 158.3 318 29.9
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 4.2e-36 157.1 302 32.1
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.0e-34 152.5 163 48.5
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 1.9e-33 148.3 111 61.3
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.4e-31 141.4 162 68.5
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 1.1e-28 132.5 83 77.1
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 2.1e-27 128.3 190 36.8
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 2.0e-22 111.7 137 42.3
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 3.0e-18 97.8 85 56.5
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.0e-17 95.1 228 33.8
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.7e-16 92.0 102 45.1
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 1.4e-15 89.0 56 69.6
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 2.9e-13 81.3 103 46.6
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 3.5e-06 57.8 37 64.9


User provided reference genes

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