Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1243600 Malus domestica HOM05D000010 ORTHO05D000063 2.5e-184 648.7 333 100.0
MD02G1243200 Malus domestica HOM05D000010 ORTHO05D000063 2.4e-155 552.4 294 98.3
MD07G1073200 Malus domestica HOM05D000010 ORTHO05D000063 1.5e-144 516.5 335 83.3
Prupe.2G091500 Prunus persica HOM05D000010 ORTHO05D000063 3.3e-128 462.2 332 72.9
RcHm_v2.0_Chr1g0334901 Rosa chinensis HOM05D000010 ORTHO05D000063 3.6e-98 362.5 336 62.2
FAN03G0942 Fragaria x ananassa HOM05D000010 ORTHO05D000063 8.2e-95 351.3 337 60.2
FAN10G1055 Fragaria x ananassa HOM05D000010 ORTHO05D000063 8.2e-95 351.3 337 60.2
FAN06G3423 Fragaria x ananassa HOM05D000010 ORTHO05D000063 3.1e-94 349.4 337 60.2
FAN01G1123 Fragaria x ananassa HOM05D000010 ORTHO05D000063 4.1e-94 349.0 337 59.9
FvH4_7g06501 Fragaria vesca HOM05D000010 ORTHO05D000063 1.3e-92 344.0 338 59.8
GSVIVG01016175001 Vitis vinifera HOM05D000010 ORTHO05D000063 3.2e-70 269.6 333 48.3
QL08p053177 Quercus lobata HOM05D000010 ORTHO05D000063 4.5e-69 265.8 353 47.6
Haze_16769 Corylus avellana HOM05D000010 ORTHO05D000063 5.0e-68 262.3 312 50.6
Dinv36367 Davidia involucrata HOM05D000010 ORTHO05D000063 1.2e-64 251.1 336 46.1
Thecc.10G088800 Theobroma cacao HOM05D000010 ORTHO05D000063 2.6e-64 250.0 306 49.3
CiPaw.01G265900 Carya illinoinensis HOM05D000010 ORTHO05D000063 1.9e-62 243.8 326 47.5
Manes.10G052500 Manihot esculenta HOM05D000010 ORTHO05D000063 7.0e-62 241.9 320 45.6
CANSAT56G2413 Cannabis sativa HOM05D000010 ORTHO05D000063 3.0e-60 236.5 327 45.9
Ciclev10031147m.g Citrus clementina HOM05D000010 ORTHO05D000063 4.3e-59 232.6 340 43.5
CSS0029840 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 3.1e-57 226.5 343 42.6
Potri.008G031800 Populus trichocarpa HOM05D000010 ORTHO05D000063 5.2e-57 225.7 310 45.2
Gohir.A05G291500 Gossypium hirsutum HOM05D000010 ORTHO05D000063 8.9e-57 224.9 313 45.0
Gorai.009G309000 Gossypium raimondii HOM05D000010 ORTHO05D000063 2.0e-56 223.8 313 45.0
CSS0030755 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 4.4e-56 222.6 313 45.0
MSTRG.27500 Avicennia marina HOM05D000010 ORTHO05D000063 7.5e-56 221.9 318 43.4
COL.COLO4_32899 Corchorus olitorius HOM05D000010 ORTHO05D000063 2.9e-55 219.9 296 45.6
Duzib114G0615 Durio zibethinus HOM05D000010 ORTHO05D000063 3.7e-55 219.5 319 45.8
Duzib114G1006 Durio zibethinus HOM05D000010 ORTHO05D000063 3.7e-55 219.5 319 46.1
SalBow4G1529 Salvia bowleyana HOM05D000010 ORTHO05D000063 8.3e-55 218.4 320 41.6
Potri.010G229900 Populus trichocarpa HOM05D000010 ORTHO05D000063 1.9e-54 217.2 307 45.9
Gohir.D05G292600 Gossypium hirsutum HOM05D000010 ORTHO05D000063 2.4e-54 216.9 313 44.4
Lj2A23G68 Lonicera japonica HOM05D000010 ORTHO05D000063 4.1e-54 216.1 317 42.9
Hma1.2p1_0117F.1_g056430 Hydrangea macrophylla HOM05D000010 ORTHO05D000063 7.1e-54 215.3 323 44.9
Duzib106G0231 Durio zibethinus HOM05D000010 ORTHO05D000063 2.7e-53 213.4 313 43.8
Sabra08G0020800 Salix brachista HOM05D000010 ORTHO05D000063 2.5e-51 206.8 336 40.5
Hma1.2p1_2971F.1_g331090 Hydrangea macrophylla HOM05D000010 ORTHO05D000063 4.3e-51 206.1 321 41.4
Cc02_g10630 Coffea canephora HOM05D000010 ORTHO05D000063 9.5e-51 204.9 312 42.9
Sabra10G0178400 Salix brachista HOM05D000010 ORTHO05D000063 1.2e-50 204.5 351 40.5
TWI38G2043 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 1.4e-49 201.1 307 41.4
Nitab4.5_0000096g0240 Nicotiana tabacum HOM05D000010 ORTHO05D000063 1.8e-49 200.7 306 43.8
ClCG08G007900 Citrullus lanatus HOM05D000010 ORTHO05D000063 2.3e-49 200.3 340 41.2
MSTRG.9134 Avicennia marina HOM05D000010 ORTHO05D000063 3.1e-49 199.9 340 38.5
Nitab4.5_0002692g0070 Nicotiana tabacum HOM05D000010 ORTHO05D000063 3.1e-49 199.9 306 43.8
PGSC0003DMG400031071 Solanum tuberosum HOM05D000010 ORTHO05D000063 1.2e-48 198.0 308 41.2
TWI63G0521 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 2.6e-48 196.8 301 41.2
Oeu046651.1 Olea europaea HOM05D000010 ORTHO05D000063 3.4e-48 196.4 319 45.5
Solyc05g055470.4 Solanum lycopersicum HOM05D000010 ORTHO05D000063 4.4e-48 196.1 307 41.4
PGSC0003DMG402023373 Solanum tuberosum HOM05D000010 ORTHO05D000063 4.4e-48 196.1 307 42.7
Solyc11g008000.2 Solanum lycopersicum HOM05D000010 ORTHO05D000063 1.7e-47 194.1 314 41.4
Sopen05g033920 Solanum pennellii HOM05D000010 ORTHO05D000063 2.2e-47 193.7 307 41.0
Sopen11g003860 Solanum pennellii HOM05D000010 ORTHO05D000063 4.9e-47 192.6 314 41.1
Lj3A936G54 Lonicera japonica HOM05D000010 ORTHO05D000063 6.4e-47 192.2 339 40.4
Nitab4.5_0001461g0040 Nicotiana tabacum HOM05D000010 ORTHO05D000063 8.3e-47 191.8 308 41.2
CiPaw.02G170400 Carya illinoinensis HOM05D000010 ORTHO05D000063 1.9e-46 190.7 331 40.2
Peaxi162Scf00253g00321 Petunia axillaris HOM05D000010 ORTHO05D000063 7.1e-46 188.7 318 41.2
Nitab4.5_0002717g0010 Nicotiana tabacum HOM05D000010 ORTHO05D000063 3.5e-45 186.4 309 41.7
CAN.G1891.2 Capsicum annuum HOM05D000010 ORTHO05D000063 1.0e-44 184.9 307 42.7
Actinidia06727 Actinidia chinensis HOM05D000010 ORTHO05D000063 1.7e-44 184.1 311 38.3
SGA_v2.0_scaffold13G06511 Striga asiatica HOM05D000010 ORTHO05D000063 2.3e-44 183.7 312 40.7
THA.LOC104816444 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 5.1e-44 182.6 314 39.2
Actinidia18551 Actinidia chinensis HOM05D000010 ORTHO05D000063 1.1e-43 181.4 313 37.7
Migut.F01913 Erythranthe guttata HOM05D000010 ORTHO05D000063 1.1e-43 181.4 323 40.2
DCAR_019077 Daucus carota HOM05D000010 ORTHO05D000063 4.3e-43 179.5 322 37.6
Sc09g0005870 Simmondsia chinensis HOM05D000010 ORTHO05D000063 4.3e-43 179.5 312 40.4
Peaxi162Scf00176g01638 Petunia axillaris HOM05D000010 ORTHO05D000063 1.2e-42 177.9 286 43.4
Rhsim09G0145800 Rhododendron simsii HOM05D000010 ORTHO05D000063 1.2e-42 177.9 329 38.6
Peaxi162Scf01105g00218 Petunia axillaris HOM05D000010 ORTHO05D000063 1.6e-42 177.6 308 40.3
TWI15G0874 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 2.1e-42 177.2 300 40.3
Eucgr.J01038 Eucalyptus grandis HOM05D000010 ORTHO05D000063 2.8e-42 176.8 317 39.1
CAN.G459.17 Capsicum annuum HOM05D000010 ORTHO05D000063 3.6e-42 176.4 312 40.1
Oeu035818.1 Olea europaea HOM05D000010 ORTHO05D000063 4.7e-42 176.0 286 40.9
THA.LOC104823200 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 1.1e-41 174.9 272 40.4
Sed0027652 Sechium edule HOM05D000010 ORTHO05D000063 6.8e-41 172.2 328 38.4
vmacro10258 Vaccinium macrocarpon HOM05D000010 ORTHO05D000063 1.2e-40 171.4 302 37.4
DCAR_006394 Daucus carota HOM05D000010 ORTHO05D000063 3.4e-40 169.9 332 41.0
Sed0026098 Sechium edule HOM05D000010 ORTHO05D000063 3.4e-40 169.9 312 38.1
CsaV3_2G021020 Cucumis sativus L. HOM05D000010 ORTHO05D000063 4.4e-40 169.5 317 38.2
MELO3C019845.2 Cucumis melo HOM05D000010 ORTHO05D000063 7.6e-40 168.7 331 38.4
PGR044G1763 Punica granatum HOM05D000010 ORTHO05D000063 2.9e-39 166.8 331 37.8
Oeu015066.2 Olea europaea HOM05D000010 ORTHO05D000063 4.9e-39 166.0 284 41.2
ClCG05G021380 Citrullus lanatus HOM05D000010 ORTHO05D000063 1.1e-38 164.9 325 37.2
vmacro07196 Vaccinium macrocarpon HOM05D000010 ORTHO05D000063 1.1e-38 164.9 320 38.1
Thhalv10013110m.g Eutrema salsugineum HOM05D000010 ORTHO05D000063 1.4e-38 164.5 291 39.9
Sed0015483 Sechium edule HOM05D000010 ORTHO05D000063 5.4e-38 162.5 326 37.1
SalBow6G5410 Salvia bowleyana HOM05D000010 ORTHO05D000063 1.2e-37 161.4 271 42.4
SGA_v2.0_scaffold62G21368 Striga asiatica HOM05D000010 ORTHO05D000063 2.1e-37 160.6 260 41.2
Actinidia38886 Actinidia chinensis HOM05D000010 ORTHO05D000063 3.5e-37 159.8 314 37.6
Lalb_Chr21g0313001 Lupinus albus HOM05D000010 ORTHO05D000063 7.8e-37 158.7 325 36.0
TAR623G1651 Trochodendron aralioides HOM05D000010 ORTHO05D000063 7.8e-37 158.7 322 37.6
MELO3C012390.2 Cucumis melo HOM05D000010 ORTHO05D000063 5.1e-36 156.0 324 35.5
AT5G04410 Arabidopsis thaliana HOM05D000010 ORTHO05D000063 1.9e-35 154.1 291 37.1
Sp6g38330 Schrenkiella parvula HOM05D000010 ORTHO05D000063 1.9e-35 154.1 291 38.5
Carub.0003s0974 Capsella rubella HOM05D000010 ORTHO05D000063 7.3e-35 152.1 271 38.0
Actinidia34793 Actinidia chinensis HOM05D000010 ORTHO05D000063 2.1e-34 150.6 315 36.2
CARHR085010 Cardamine hirsuta HOM05D000010 ORTHO05D000063 2.8e-34 150.2 271 38.7
CsaV3_5G035860 Cucumis sativus L. HOM05D000010 ORTHO05D000063 2.8e-34 150.2 325 35.1
AL3G21890 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 3.6e-34 149.8 268 39.6
Thhalv10020438m.g Eutrema salsugineum HOM05D000010 ORTHO05D000063 2.4e-33 147.1 275 37.1
Carub.0006s0335 Capsella rubella HOM05D000010 ORTHO05D000063 4.0e-33 146.4 277 38.3
Lalb_Chr06g0169951 Lupinus albus HOM05D000010 ORTHO05D000063 4.0e-33 146.4 341 36.1
AL6G14030 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 6.9e-33 145.6 291 36.8
TAR633G0974 Trochodendron aralioides HOM05D000010 ORTHO05D000063 1.2e-32 144.8 337 37.7
Phvul.007G140500 Phaseolus vulgaris HOM05D000010 ORTHO05D000063 2.6e-32 143.7 315 36.8
TPR.G37833 Trifolium pratense HOM05D000010 ORTHO05D000063 9.9e-32 141.7 317 36.6
Glyma.20G192300 Glycine max HOM05D000010 ORTHO05D000063 1.3e-31 141.4 317 37.5
Sed0016699 Sechium edule HOM05D000010 ORTHO05D000063 1.7e-31 141.0 324 35.2
Glyma.10G197600 Glycine max HOM05D000010 ORTHO05D000063 2.9e-31 140.2 315 36.5
Sp3g08760 Schrenkiella parvula HOM05D000010 ORTHO05D000063 2.9e-31 140.2 310 36.8
Aa31LG3G3340 Aethionema arabicum HOM05D000010 ORTHO05D000063 4.9e-31 139.4 277 36.8
VMungo0720G0825 Vigna mungo HOM05D000010 ORTHO05D000063 6.4e-31 139.0 322 36.6
Atru.chr12.893 Acer truncatum HOM05D000010 ORTHO05D000063 8.4e-31 138.7 131 51.1
AT3G10500 Arabidopsis thaliana HOM05D000010 ORTHO05D000063 2.4e-30 137.1 276 39.1
Lj5g0011538 Lotus japonicus HOM05D000010 ORTHO05D000063 2.4e-30 137.1 322 36.0
Rhsim03G0112000 Rhododendron simsii HOM05D000010 ORTHO05D000063 2.4e-30 137.1 259 36.7
Ca_10449_v3 Cicer arietinum L. HOM05D000010 ORTHO05D000063 5.4e-30 136.0 339 33.0
BcaC06g32150 Brassica carinata HOM05D000010 ORTHO05D000063 9.3e-30 135.2 277 35.7
PGR142G0341 Punica granatum HOM05D000010 ORTHO05D000063 2.1e-29 134.0 304 34.9
Lsat_1_v5_gn_2_103381 Lactuca sativa HOM05D000010 ORTHO05D000063 2.7e-29 133.7 314 32.2
ECA233G3937 Erigeron canadensis HOM05D000010 ORTHO05D000063 3.5e-29 133.3 319 33.9
Hund06760 Selenicereus undatus HOM05D000010 ORTHO05D000063 4.6e-29 132.9 279 38.4
Migut.F01687 Erythranthe guttata HOM05D000010 ORTHO05D000063 6.0e-29 132.5 296 33.8
Psat0s972g0040 Pisum sativum HOM05D000010 ORTHO05D000063 1.7e-28 131.0 315 34.6
EL10Ac4g08623 Beta vulgaris HOM05D000010 ORTHO05D000063 2.3e-28 130.6 316 35.8
Medtr1g090723 Medicago truncatula HOM05D000010 ORTHO05D000063 3.9e-28 129.8 249 38.2
Lsat_1_v5_gn_8_17440 Lactuca sativa HOM05D000010 ORTHO05D000063 1.1e-27 128.3 271 37.3
BraA10t45214Z Brassica rapa HOM05D000010 ORTHO05D000063 1.5e-27 127.9 292 34.2
CARHR208900 Cardamine hirsuta HOM05D000010 ORTHO05D000063 1.9e-27 127.5 290 34.5
A10p31670 Brassica napus HOM05D000010 ORTHO05D000063 9.6e-27 125.2 292 33.6
Dinv31252 Davidia involucrata HOM05D000010 ORTHO05D000063 2.1e-26 124.0 177 40.7
BcaNung04623 Brassica carinata HOM05D000010 ORTHO05D000063 3.6e-26 123.2 279 36.6
BcaB05g21763 Brassica carinata HOM05D000010 ORTHO05D000063 1.1e-25 121.7 295 34.9
BcaB01g05896 Brassica carinata HOM05D000010 ORTHO05D000063 1.4e-25 121.3 278 34.5
C03p02030 Brassica napus HOM05D000010 ORTHO05D000063 1.4e-25 121.3 278 34.5
AUR62041525 Chenopodium quinoa HOM05D000010 ORTHO05D000063 1.4e-25 121.3 314 35.0
HanXRQChr11g0336031 Helianthus annuus HOM05D000010 ORTHO05D000063 1.8e-25 120.9 318 33.6
BolC3t12756H Brassica oleracea HOM05D000010 ORTHO05D000063 2.6e-24 117.1 278 33.8
Psat6g173000 Pisum sativum HOM05D000010 ORTHO05D000063 4.5e-24 116.3 286 32.2
AUR62041539 Chenopodium quinoa HOM05D000010 ORTHO05D000063 5.8e-24 115.9 340 32.4
Cpa.g.sc706.6 Carica papaya HOM05D000010 ORTHO05D000063 7.6e-24 115.5 116 56.0
Nn2g13861 Nelumbo nucifera HOM05D000010 ORTHO05D000063 7.6e-24 115.5 321 32.4
BolC9t59978H Brassica oleracea HOM05D000010 ORTHO05D000063 1.7e-23 114.4 301 32.6
HanXRQChr14g0455811 Helianthus annuus HOM05D000010 ORTHO05D000063 1.7e-23 114.4 317 31.9
Medtr0036s0150 Medicago truncatula HOM05D000010 ORTHO05D000063 2.9e-23 113.6 294 34.0
ECA238G1989 Erigeron canadensis HOM05D000010 ORTHO05D000063 6.4e-23 112.5 348 28.7
TAR636G1511 Trochodendron aralioides HOM05D000010 ORTHO05D000063 1.1e-22 111.7 232 34.9
C09p72340 Brassica napus HOM05D000010 ORTHO05D000063 1.9e-22 110.9 304 32.2
A01p41730 Brassica napus HOM05D000010 ORTHO05D000063 3.2e-22 110.2 278 33.5
A03p01660 Brassica napus HOM05D000010 ORTHO05D000063 3.2e-22 110.2 292 32.2
BraA01t04248Z Brassica rapa HOM05D000010 ORTHO05D000063 3.2e-22 110.2 278 33.5
BraA03t09541Z Brassica rapa HOM05D000010 ORTHO05D000063 9.3e-22 108.6 291 32.0
MBI17_g35900_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000063 1.6e-21 107.8 309 30.4
BolC1t05391H Brassica oleracea HOM05D000010 ORTHO05D000063 2.1e-21 107.5 276 33.3
HanXRQChr08g0218221 Helianthus annuus HOM05D000010 ORTHO05D000063 1.8e-20 104.4 277 33.2
BcaNung07217 Brassica carinata HOM05D000010 ORTHO05D000063 2.3e-20 104.0 275 32.7
BcaNung07203 Brassica carinata HOM05D000010 ORTHO05D000063 2.5e-19 100.5 271 33.6
Ah.06g194120 Amaranthus hybridus HOM05D000010 ORTHO05D000063 3.3e-19 100.1 295 32.9
C02p01920 Brassica napus HOM05D000010 ORTHO05D000063 2.8e-18 97.1 311 31.5
BolC2t06149H Brassica oleracea HOM05D000010 ORTHO05D000063 2.8e-18 97.1 311 31.5
BcaC03g12944 Brassica carinata HOM05D000010 ORTHO05D000063 1.8e-17 94.4 311 31.5
PSO063G6455 Papaver somniferum HOM05D000010 ORTHO05D000063 2.0e-16 90.9 310 32.9
Ah.04g154160 Amaranthus hybridus HOM05D000010 ORTHO05D000063 5.8e-16 89.4 315 32.1
PSO339G4638 Papaver somniferum HOM05D000010 ORTHO05D000063 1.3e-15 88.2 306 33.0
unitig_37.g12324 Utricularia gibba HOM05D000010 ORTHO05D000063 1.9e-14 84.3 305 29.5
BraA02t04811Z Brassica rapa HOM05D000010 ORTHO05D000063 3.2e-14 83.6 229 36.7
Oeu053360.1 Olea europaea HOM05D000010 ORTHO05D000063 1.6e-13 81.3 134 38.1
arahy.Tifrunner.gnm1.ann1.ILS8DP Arachis hypogaea HOM05D000010 ORTHO05D000063 4.6e-13 79.7 335 29.9
arahy.Tifrunner.gnm1.ann1.FFKU3L Arachis hypogaea HOM05D000010 ORTHO05D000063 6.0e-13 79.3 232 34.1
Aqoxy1G01096 Aquilegia oxysepala HOM05D000010 ORTHO05D000063 1.1e-11 75.1 318 28.6
Zm00001eb191020 Zea mays HOM05D000010 ORTHO05D000063 2.4e-09 67.4 127 37.0
Os02g0822400 Oryza sativa ssp. japonica HOM05D000010 ORTHO05D000063 3.2e-06 57.0 280 28.2


User provided reference genes

Program Settings