Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 8.3e-67 256.9 131 100.0
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 3.1e-45 185.3 131 77.9
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 3.8e-43 178.3 131 76.3
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.0e-40 170.2 135 71.9
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 1.3e-40 169.9 135 71.9
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 5.1e-40 167.9 135 71.1
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.5e-39 166.4 135 70.4
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 5.6e-39 164.5 135 68.1
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 6.2e-38 161.0 135 66.7
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 1.4e-37 159.8 135 65.9
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 1.8e-37 159.5 135 65.2
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 1.8e-37 159.5 135 65.9
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 1.8e-37 159.5 142 62.0
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 6.9e-37 157.5 132 66.7
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 1.5e-36 156.4 135 64.4
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 1.5e-36 156.4 135 63.7
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 2.0e-36 156.0 135 64.4
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 2.0e-36 156.0 135 65.2
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 2.0e-36 156.0 135 63.0
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 3.4e-36 155.2 131 65.6
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 3.4e-36 155.2 135 64.4
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 3.4e-36 155.2 135 65.2
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 4.4e-36 154.8 135 63.7
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 4.4e-36 154.8 135 63.7
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 1.7e-35 152.9 131 66.4
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 1.7e-35 152.9 135 63.0
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 1.7e-35 152.9 116 68.1
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 2.2e-35 152.5 135 63.0
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 2.9e-35 152.1 112 68.8
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 3.8e-35 151.8 135 61.5
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 3.8e-35 151.8 135 63.7
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 3.8e-35 151.8 135 64.4
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 4.9e-35 151.4 132 65.2
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 4.9e-35 151.4 135 61.5
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 4.9e-35 151.4 135 63.0
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 6.4e-35 151.0 135 61.5
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 6.4e-35 151.0 135 62.2
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 6.4e-35 151.0 132 63.6
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 6.4e-35 151.0 135 61.5
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 8.4e-35 150.6 137 62.8
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 8.4e-35 150.6 135 61.5
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 1.1e-34 150.2 135 63.7
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 1.1e-34 150.2 135 62.2
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 1.1e-34 150.2 131 62.6
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 2.4e-34 149.1 137 62.0
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 2.4e-34 149.1 111 70.3
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 2.4e-34 149.1 131 64.1
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 3.2e-34 148.7 132 61.4
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 3.2e-34 148.7 135 60.7
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 3.2e-34 148.7 136 61.0
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 3.2e-34 148.7 136 61.0
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 4.2e-34 148.3 131 62.6
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 4.2e-34 148.3 131 64.1
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 4.2e-34 148.3 131 64.1
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 4.2e-34 148.3 131 62.6
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 4.2e-34 148.3 132 61.4
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 5.4e-34 147.9 135 62.2
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 5.4e-34 147.9 135 61.5
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 7.1e-34 147.5 131 61.8
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 7.1e-34 147.5 129 64.3
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 7.1e-34 147.5 129 65.9
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 9.3e-34 147.1 131 61.1
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 9.3e-34 147.1 115 66.1
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 1.2e-33 146.7 135 59.3
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 1.2e-33 146.7 131 62.6
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 1.6e-33 146.4 135 59.3
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 1.6e-33 146.4 136 58.8
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 1.6e-33 146.4 135 60.7
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 2.1e-33 146.0 135 59.3
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 2.1e-33 146.0 120 71.7
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 2.1e-33 146.0 112 67.9
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 2.1e-33 146.0 131 62.6
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 2.7e-33 145.6 135 60.0
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 2.7e-33 145.6 135 59.3
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 2.7e-33 145.6 135 62.2
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.7e-33 145.6 135 61.5
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 3.5e-33 145.2 131 61.8
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 3.5e-33 145.2 135 61.5
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 3.5e-33 145.2 131 63.4
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 3.5e-33 145.2 112 67.9
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 4.6e-33 144.8 135 60.7
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 4.6e-33 144.8 135 60.7
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 4.6e-33 144.8 111 67.6
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 4.6e-33 144.8 135 62.2
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 6.0e-33 144.4 135 62.2
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 7.9e-33 144.1 131 60.3
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 1.0e-32 143.7 113 66.4
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 1.0e-32 143.7 131 61.8
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 1.3e-32 143.3 132 61.4
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 1.3e-32 143.3 130 61.5
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 1.7e-32 142.9 135 58.5
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 3.0e-32 142.1 131 60.3
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 5.1e-32 141.4 135 59.3
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 8.7e-32 140.6 131 59.5
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 2.5e-31 139.0 115 64.3
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 4.3e-31 138.3 135 57.8
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 4.3e-31 138.3 131 58.8
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 7.4e-31 137.5 136 56.6
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 1.3e-30 136.7 108 66.7
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 2.1e-30 136.0 120 61.7
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 2.8e-30 135.6 116 60.3
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 2.8e-30 135.6 137 56.9
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 4.8e-30 134.8 135 56.3
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 4.8e-30 134.8 116 57.8
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 9.0e-29 130.6 116 55.2
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 1.2e-28 130.2 116 55.2
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 2.7e-25 119.0 118 55.1
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 3.5e-25 118.6 93 65.6
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 4.6e-25 118.2 88 72.7
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 6.7e-24 114.4 143 46.2
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 1.9e-23 112.8 137 49.6
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 5.6e-23 111.3 91 63.7
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 1.8e-21 106.3 93 63.4
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 2.4e-21 105.9 157 40.1
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 5.3e-21 104.8 115 57.4
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 7.1e-18 94.4 69 60.9
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 6.3e-14 81.3 76 61.8
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 1.5e-12 76.6 73 60.3
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 1.7e-11 73.2 103 46.6
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 2.2e-11 72.8 45 75.6
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 2.2e-11 72.8 45 75.6
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 9.3e-10 67.4 73 52.1
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 7.9e-09 64.3 61 57.4
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 2.2e-06 56.2 75 48.0
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 2.2e-06 56.2 53 56.6


User provided reference genes

Program Settings