Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 4.9e-30 133.7 61 100.0
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 5.7e-26 120.2 55 98.2
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 4.8e-25 117.1 55 96.4
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 4.8e-25 117.1 55 96.4
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 6.3e-25 116.7 55 94.5
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 1.1e-24 115.9 55 94.5
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 1.4e-24 115.5 55 94.5
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 1.4e-24 115.5 55 92.7
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 1.4e-24 115.5 55 94.5
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 1.8e-24 115.2 55 94.5
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 1.8e-24 115.2 55 92.7
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 2.4e-24 114.8 55 92.7
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 2.4e-24 114.8 55 90.9
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 2.4e-24 114.8 55 92.7
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 2.4e-24 114.8 55 92.7
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 3.1e-24 114.4 55 92.7
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 3.1e-24 114.4 55 92.7
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 5.3e-24 113.6 54 94.4
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 5.3e-24 113.6 54 94.4
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 5.3e-24 113.6 55 92.7
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 6.9e-24 113.2 55 90.9
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 6.9e-24 113.2 55 89.1
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 6.9e-24 113.2 55 90.9
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 6.9e-24 113.2 54 92.6
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 6.9e-24 113.2 54 92.6
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 6.9e-24 113.2 55 90.9
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 6.9e-24 113.2 55 89.1
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 6.9e-24 113.2 55 89.1
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 6.9e-24 113.2 55 90.9
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 9.0e-24 112.8 54 92.6
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 9.0e-24 112.8 55 89.1
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 1.2e-23 112.5 55 90.9
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 1.2e-23 112.5 55 90.9
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 1.2e-23 112.5 55 90.9
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 1.2e-23 112.5 55 89.1
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 1.2e-23 112.5 54 90.7
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 1.2e-23 112.5 55 92.7
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 1.2e-23 112.5 55 89.1
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 1.5e-23 112.1 55 89.1
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 1.5e-23 112.1 55 90.9
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 1.5e-23 112.1 55 89.1
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 1.5e-23 112.1 55 87.3
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 2.0e-23 111.7 55 89.1
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 2.6e-23 111.3 55 89.1
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 2.6e-23 111.3 55 89.1
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 2.6e-23 111.3 55 89.1
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 2.6e-23 111.3 55 89.1
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 2.6e-23 111.3 55 89.1
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 2.6e-23 111.3 55 89.1
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 2.6e-23 111.3 55 87.3
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 2.6e-23 111.3 55 89.1
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 2.6e-23 111.3 55 89.1
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 2.6e-23 111.3 55 89.1
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 2.6e-23 111.3 55 89.1
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 2.6e-23 111.3 55 87.3
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 3.4e-23 110.9 54 87.0
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 3.4e-23 110.9 55 87.3
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 3.4e-23 110.9 55 87.3
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 3.4e-23 110.9 55 87.3
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 3.4e-23 110.9 55 87.3
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 3.4e-23 110.9 55 89.1
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 3.4e-23 110.9 55 90.9
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 3.4e-23 110.9 55 87.3
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 4.5e-23 110.5 55 87.3
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 4.5e-23 110.5 55 89.1
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 4.5e-23 110.5 55 85.5
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 5.9e-23 110.2 55 87.3
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 5.9e-23 110.2 55 89.1
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 5.9e-23 110.2 55 89.1
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 5.9e-23 110.2 55 89.1
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 7.6e-23 109.8 55 85.5
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 7.6e-23 109.8 55 87.3
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 7.6e-23 109.8 54 88.9
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 7.6e-23 109.8 54 88.9
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 7.6e-23 109.8 55 87.3
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 7.6e-23 109.8 55 87.3
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 7.6e-23 109.8 55 87.3
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 7.6e-23 109.8 55 87.3
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 7.6e-23 109.8 55 89.1
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 7.6e-23 109.8 55 89.1
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 7.6e-23 109.8 55 87.3
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 7.6e-23 109.8 55 87.3
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 7.6e-23 109.8 55 87.3
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 7.6e-23 109.8 55 87.3
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 7.6e-23 109.8 54 88.9
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 7.6e-23 109.8 55 89.1
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 7.6e-23 109.8 55 87.3
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 1.0e-22 109.4 55 83.6
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 1.0e-22 109.4 55 83.6
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 1.0e-22 109.4 55 85.5
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 1.0e-22 109.4 55 89.1
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 1.3e-22 109.0 54 87.0
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 1.3e-22 109.0 55 87.3
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 1.3e-22 109.0 55 87.3
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 1.3e-22 109.0 55 89.1
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 1.3e-22 109.0 55 87.3
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 1.7e-22 108.6 55 85.5
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 2.2e-22 108.2 55 83.6
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 2.2e-22 108.2 54 85.2
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 2.2e-22 108.2 55 87.3
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 2.2e-22 108.2 54 83.3
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 5.0e-22 107.1 55 83.6
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 5.0e-22 107.1 55 80.0
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 5.0e-22 107.1 55 80.0
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 5.0e-22 107.1 55 85.5
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 5.0e-22 107.1 54 87.0
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 8.5e-22 106.3 55 81.8
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 2.5e-21 104.8 55 83.6
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 5.5e-21 103.6 54 85.2
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 5.5e-21 103.6 54 83.3
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 2.1e-20 101.7 55 78.2
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 2.7e-20 101.3 55 81.8
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 3.6e-20 100.9 55 80.0
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 3.6e-20 100.9 55 80.0
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 1.3e-19 99.0 54 77.8
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 5.1e-19 97.1 55 76.4
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 1.9e-18 95.1 55 70.9
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 3.3e-18 94.4 54 75.9
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 9.7e-18 92.8 54 72.2
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 4.1e-16 87.4 48 79.2
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 5.7e-10 67.0 53 50.9
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 4.8e-09 63.9 29 96.6
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 6.9e-08 60.1 32 81.2
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 3.4e-07 57.8 30 80.0
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 7.7e-07 56.6 27 88.9
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 1.3e-06 55.8 27 85.2
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 2.2e-06 55.1 27 88.9
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 5.0e-06 53.9 35 71.4


User provided reference genes

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