Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1090300 Malus domestica HOM05D003317 ORTHO05D003696 4.8e-51 204.1 98 100.0
MD15G1216800 Malus domestica HOM05D003317 ORTHO05D003696 1.4e-47 192.6 96 93.8
Prupe.7G199800 Prunus persica HOM05D003317 ORTHO05D003696 1.4e-42 176.0 95 86.3
Thecc.09G078000 Theobroma cacao HOM05D003317 ORTHO05D003696 3.6e-38 161.4 96 77.1
TAR626G1452 Trochodendron aralioides HOM05D003317 ORTHO05D003696 1.1e-36 156.4 95 80.0
TAR626G1699 Trochodendron aralioides HOM05D003317 ORTHO05D003696 1.1e-36 156.4 95 80.0
Ciclev10007604m.g Citrus clementina HOM05D003317 ORTHO05D003696 1.3e-35 152.9 95 75.8
CiPaw.03G207100 Carya illinoinensis HOM05D003317 ORTHO05D003696 1.7e-35 152.5 93 75.3
RcHm_v2.0_Chr2g0094821 Rosa chinensis HOM05D003317 ORTHO05D003696 2.8e-35 151.8 95 74.7
Dinv42387 Davidia involucrata HOM05D003317 ORTHO05D003696 3.7e-35 151.4 95 74.7
QL11p000685 Quercus lobata HOM05D003317 ORTHO05D003696 1.1e-34 149.8 94 72.3
Cfa002996 Carpinus fangiana HOM05D003317 ORTHO05D003696 1.8e-34 149.1 98 71.4
TWI34G1043 Tripterygium wilfordii HOM05D003317 ORTHO05D003696 1.8e-34 149.1 95 72.6
Atru.chr7.1699 Acer truncatum HOM05D003317 ORTHO05D003696 4.1e-34 147.9 95 73.7
FAN23G1713 Fragaria x ananassa HOM05D003317 ORTHO05D003696 4.1e-34 147.9 95 71.6
Potri.006G220600 Populus trichocarpa HOM05D003317 ORTHO05D003696 4.1e-34 147.9 93 74.2
FvH4_1g08600 Fragaria vesca HOM05D003317 ORTHO05D003696 5.3e-34 147.5 95 71.6
FAN19G2419 Fragaria x ananassa HOM05D003317 ORTHO05D003696 5.3e-34 147.5 95 71.6
Gohir.A06G076100 Gossypium hirsutum HOM05D003317 ORTHO05D003696 9.1e-34 146.7 95 74.7
Glyma.17G049600 Glycine max HOM05D003317 ORTHO05D003696 1.2e-33 146.4 95 66.3
Nn6g35618 Nelumbo nucifera HOM05D003317 ORTHO05D003696 1.2e-33 146.4 95 73.7
Nitab4.5_0002966g0040 Nicotiana tabacum HOM05D003317 ORTHO05D003696 2.0e-33 145.6 96 71.9
VMungo1309G0541 Vigna mungo HOM05D003317 ORTHO05D003696 2.0e-33 145.6 95 67.4
Actinidia29929 Actinidia chinensis HOM05D003317 ORTHO05D003696 2.6e-33 145.2 95 73.7
Lj6g0021845 Lotus japonicus HOM05D003317 ORTHO05D003696 2.6e-33 145.2 95 66.3
Manes.16G095800 Manihot esculenta HOM05D003317 ORTHO05D003696 3.4e-33 144.8 95 70.5
Duzib168G1355 Durio zibethinus HOM05D003317 ORTHO05D003696 4.5e-33 144.4 95 73.7
Gorai.010G087700 Gossypium raimondii HOM05D003317 ORTHO05D003696 4.5e-33 144.4 95 73.7
Sabra06G0170300 Salix brachista HOM05D003317 ORTHO05D003696 4.5e-33 144.4 93 73.1
Sopen07g021250 Solanum pennellii HOM05D003317 ORTHO05D003696 4.5e-33 144.4 96 70.8
Cc06_g12060 Coffea canephora HOM05D003317 ORTHO05D003696 7.7e-33 143.7 95 72.6
Gohir.A07G019500 Gossypium hirsutum HOM05D003317 ORTHO05D003696 7.7e-33 143.7 95 71.6
Lalb_Chr23g0276391 Lupinus albus HOM05D003317 ORTHO05D003696 7.7e-33 143.7 95 66.3
Nitab4.5_0000343g0140 Nicotiana tabacum HOM05D003317 ORTHO05D003696 7.7e-33 143.7 96 70.8
Thecc.09G063600 Theobroma cacao HOM05D003317 ORTHO05D003696 1.0e-32 143.3 95 71.6
Potri.006G142200 Populus trichocarpa HOM05D003317 ORTHO05D003696 1.3e-32 142.9 95 70.5
PGSC0003DMG400013008 Solanum tuberosum HOM05D003317 ORTHO05D003696 1.3e-32 142.9 96 69.8
VMungo1215G0865 Vigna mungo HOM05D003317 ORTHO05D003696 1.3e-32 142.9 95 66.3
TAR624G0435 Trochodendron aralioides HOM05D003317 ORTHO05D003696 1.7e-32 142.5 92 75.0
Phvul.009G227500 Phaseolus vulgaris HOM05D003317 ORTHO05D003696 2.2e-32 142.1 95 65.3
Lj7A686T70 Lonicera japonica HOM05D003317 ORTHO05D003696 2.9e-32 141.7 95 71.6
Medtr4g125440 Medicago truncatula HOM05D003317 ORTHO05D003696 3.8e-32 141.4 94 67.0
GSVIVG01015088001 Vitis vinifera HOM05D003317 ORTHO05D003696 3.8e-32 141.4 90 73.3
Sabra06G0111300 Salix brachista HOM05D003317 ORTHO05D003696 5.0e-32 141.0 94 68.1
Gohir.D06G075100 Gossypium hirsutum HOM05D003317 ORTHO05D003696 6.5e-32 140.6 95 72.6
Gorai.001G020000 Gossypium raimondii HOM05D003317 ORTHO05D003696 6.5e-32 140.6 96 69.8
Lalb_Chr07g0181161 Lupinus albus HOM05D003317 ORTHO05D003696 6.5e-32 140.6 93 68.8
Medtr4g125410 Medicago truncatula HOM05D003317 ORTHO05D003696 6.5e-32 140.6 95 66.3
vmacro06338 Vaccinium macrocarpon HOM05D003317 ORTHO05D003696 6.5e-32 140.6 95 73.7
Psat1g134160 Pisum sativum HOM05D003317 ORTHO05D003696 8.5e-32 140.2 95 63.2
COL.COLO4_21141 Corchorus olitorius HOM05D003317 ORTHO05D003696 1.1e-31 139.8 96 68.8
Gohir.D07G019300 Gossypium hirsutum HOM05D003317 ORTHO05D003696 1.1e-31 139.8 96 69.8
CAN.G498.3 Capsicum annuum HOM05D003317 ORTHO05D003696 2.5e-31 138.7 96 67.7
Haze_26007 Corylus avellana HOM05D003317 ORTHO05D003696 2.5e-31 138.7 86 73.3
Phvul.003G131200 Phaseolus vulgaris HOM05D003317 ORTHO05D003696 2.5e-31 138.7 95 65.3
CAN.G63.8 Capsicum annuum HOM05D003317 ORTHO05D003696 3.2e-31 138.3 96 67.7
Medtr2g041610 Medicago truncatula HOM05D003317 ORTHO05D003696 4.2e-31 137.9 95 62.1
Peaxi162Scf00127g00131 Petunia axillaris HOM05D003317 ORTHO05D003696 5.5e-31 137.5 95 67.4
Ca_21319_v3 Cicer arietinum L. HOM05D003317 ORTHO05D003696 9.4e-31 136.7 95 65.3
TPR.G28585 Trifolium pratense HOM05D003317 ORTHO05D003696 1.2e-30 136.3 95 61.1
AUR62025246 Chenopodium quinoa HOM05D003317 ORTHO05D003696 2.1e-30 135.6 94 64.9
AUR62028939 Chenopodium quinoa HOM05D003317 ORTHO05D003696 2.1e-30 135.6 94 64.9
Lj4g0026519 Lotus japonicus HOM05D003317 ORTHO05D003696 2.1e-30 135.6 95 62.1
EL10Ac8g19064 Beta vulgaris HOM05D003317 ORTHO05D003696 2.7e-30 135.2 95 63.2
FAN26G2208 Fragaria x ananassa HOM05D003317 ORTHO05D003696 2.7e-30 135.2 85 72.9
Hund08778 Selenicereus undatus HOM05D003317 ORTHO05D003696 2.7e-30 135.2 95 64.2
FAN26G0708 Fragaria x ananassa HOM05D003317 ORTHO05D003696 3.6e-30 134.8 85 71.8
Lj7A221G28 Lonicera japonica HOM05D003317 ORTHO05D003696 6.1e-30 134.0 93 66.7
FAN28G0340 Fragaria x ananassa HOM05D003317 ORTHO05D003696 7.9e-30 133.7 93 65.6
Eucgr.C00817 Eucalyptus grandis HOM05D003317 ORTHO05D003696 1.4e-29 132.9 93 68.8
Migut.L01559 Erythranthe guttata HOM05D003317 ORTHO05D003696 1.8e-29 132.5 95 62.1
Oeu063419.1 Olea europaea HOM05D003317 ORTHO05D003696 1.8e-29 132.5 84 73.8
vmacro12621 Vaccinium macrocarpon HOM05D003317 ORTHO05D003696 2.3e-29 132.1 93 67.7
CANSAT56G0327 Cannabis sativa HOM05D003317 ORTHO05D003696 3.9e-29 131.3 94 64.9
Manes.03G053200 Manihot esculenta HOM05D003317 ORTHO05D003696 5.1e-29 131.0 93 65.6
Sed0002159 Sechium edule HOM05D003317 ORTHO05D003696 5.1e-29 131.0 95 63.2
arahy.Tifrunner.gnm1.ann1.MFQ8D7 Arachis hypogaea HOM05D003317 ORTHO05D003696 8.8e-29 130.2 95 63.2
arahy.Tifrunner.gnm1.ann1.81HHLD Arachis hypogaea HOM05D003317 ORTHO05D003696 1.1e-28 129.8 95 63.2
Cpa.g.sc126.22 Carica papaya HOM05D003317 ORTHO05D003696 1.1e-28 129.8 93 64.5
THA.LOC104815331 Tarenaya hassleriana HOM05D003317 ORTHO05D003696 1.5e-28 129.4 86 69.8
SalBow4G1263 Salvia bowleyana HOM05D003317 ORTHO05D003696 2.0e-28 129.0 93 65.6
Aqoxy7G03984 Aquilegia oxysepala HOM05D003317 ORTHO05D003696 3.3e-28 128.3 96 67.7
arahy.Tifrunner.gnm1.ann1.7WMI9V Arachis hypogaea HOM05D003317 ORTHO05D003696 3.3e-28 128.3 95 62.1
arahy.Tifrunner.gnm1.ann1.C19Y0U Arachis hypogaea HOM05D003317 ORTHO05D003696 3.3e-28 128.3 95 62.1
Rhsim03G0227900 Rhododendron simsii HOM05D003317 ORTHO05D003696 4.4e-28 127.9 94 69.1
CSS0017754 Camellia sinensis var. sinensis HOM05D003317 ORTHO05D003696 5.7e-28 127.5 93 64.5
COL.COLO4_18104 Corchorus olitorius HOM05D003317 ORTHO05D003696 7.4e-28 127.1 81 74.1
PGR142G0733 Punica granatum HOM05D003317 ORTHO05D003696 7.4e-28 127.1 93 65.6
Ah.09g231590 Amaranthus hybridus HOM05D003317 ORTHO05D003696 1.3e-27 126.3 93 60.2
Rhsim01G0183000 Rhododendron simsii HOM05D003317 ORTHO05D003696 1.3e-27 126.3 93 63.4
DCAR_028330 Daucus carota HOM05D003317 ORTHO05D003696 2.2e-27 125.6 95 62.1
Dinv41844 Davidia involucrata HOM05D003317 ORTHO05D003696 2.8e-27 125.2 93 66.7
Lsat_1_v5_gn_7_35060 Lactuca sativa HOM05D003317 ORTHO05D003696 3.7e-27 124.8 94 64.9
MSTRG.25987 Avicennia marina HOM05D003317 ORTHO05D003696 6.3e-27 124.0 98 61.2
DCAR_004378 Daucus carota HOM05D003317 ORTHO05D003696 6.3e-27 124.0 93 66.7
TWI32G0197 Tripterygium wilfordii HOM05D003317 ORTHO05D003696 1.1e-26 123.2 93 63.4
MBI19_g11829_MAGBIO Magnolia biondii HOM05D003317 ORTHO05D003696 2.4e-26 122.1 93 65.6
Psat4g017760 Pisum sativum HOM05D003317 ORTHO05D003696 3.1e-26 121.7 91 64.8
GSVIVG01035471001 Vitis vinifera HOM05D003317 ORTHO05D003696 3.1e-26 121.7 96 63.5
PSO135G1032 Papaver somniferum HOM05D003317 ORTHO05D003696 4.1e-26 121.3 96 62.5
Cfa002995 Carpinus fangiana HOM05D003317 ORTHO05D003696 1.2e-25 119.8 95 60.0
Ca_23417_v3 Cicer arietinum L. HOM05D003317 ORTHO05D003696 1.2e-25 119.8 94 59.6
Migut.A00075 Erythranthe guttata HOM05D003317 ORTHO05D003696 1.2e-25 119.8 92 59.8
Oeu018029.1 Olea europaea HOM05D003317 ORTHO05D003696 1.5e-25 119.4 93 59.1
PSO210G7636 Papaver somniferum HOM05D003317 ORTHO05D003696 1.5e-25 119.4 96 62.5
C07p09320 Brassica napus HOM05D003317 ORTHO05D003696 3.5e-25 118.2 85 62.4
BolC7t41350H Brassica oleracea HOM05D003317 ORTHO05D003696 3.5e-25 118.2 85 62.4
CsaV3_1G040990 Cucumis sativus L. HOM05D003317 ORTHO05D003696 3.5e-25 118.2 98 63.3
SGA_v2.0_scaffold20G09159 Striga asiatica HOM05D003317 ORTHO05D003696 3.5e-25 118.2 93 62.4
ClCG03G015120 Citrullus lanatus HOM05D003317 ORTHO05D003696 4.5e-25 117.9 89 66.3
HanXRQChr09g0237821 Helianthus annuus HOM05D003317 ORTHO05D003696 4.5e-25 117.9 96 62.5
BraA07t28422Z Brassica rapa HOM05D003317 ORTHO05D003696 1.3e-24 116.3 80 65.0
Ciclev10010155m.g Citrus clementina HOM05D003317 ORTHO05D003696 1.3e-24 116.3 89 62.9
ECA240G4381 Erigeron canadensis HOM05D003317 ORTHO05D003696 1.3e-24 116.3 84 63.1
BcaB06g26884 Brassica carinata HOM05D003317 ORTHO05D003696 1.7e-24 115.9 80 63.8
SGA_v2.0_scaffold21G09482 Striga asiatica HOM05D003317 ORTHO05D003696 1.7e-24 115.9 95 51.6
CARHR103720 Cardamine hirsuta HOM05D003317 ORTHO05D003696 2.9e-24 115.2 81 60.5
Cc08_g01130 Coffea canephora HOM05D003317 ORTHO05D003696 2.9e-24 115.2 82 67.1
Sp3g24620 Schrenkiella parvula HOM05D003317 ORTHO05D003696 2.9e-24 115.2 79 62.0
Carub.0003s2717 Capsella rubella HOM05D003317 ORTHO05D003696 3.8e-24 114.8 80 60.0
A07p06270 Brassica napus HOM05D003317 ORTHO05D003696 6.5e-24 114.0 80 62.5
Nitab4.5_0008422g0030 Nicotiana tabacum HOM05D003317 ORTHO05D003696 6.5e-24 114.0 80 68.8
BcaC06g35953 Brassica carinata HOM05D003317 ORTHO05D003696 1.1e-23 113.2 80 63.8
SHI33751 Sapria himalayana HOM05D003317 ORTHO05D003696 1.1e-23 113.2 80 62.5
DCAR_001231 Daucus carota HOM05D003317 ORTHO05D003696 1.9e-23 112.5 93 60.2
Nitab4.5_0000446g0150 Nicotiana tabacum HOM05D003317 ORTHO05D003696 2.5e-23 112.1 80 66.2
AL3G43680 Arabidopsis lyrata HOM05D003317 ORTHO05D003696 3.2e-23 111.7 80 58.8
MELO3C015517.2 Cucumis melo HOM05D003317 ORTHO05D003696 3.2e-23 111.7 95 61.1
Psat4g017800 Pisum sativum HOM05D003317 ORTHO05D003696 1.6e-22 109.4 83 63.9
Psat4g030640 Pisum sativum HOM05D003317 ORTHO05D003696 6.1e-22 107.5 84 63.1
AT2G06040 Arabidopsis thaliana HOM05D003317 ORTHO05D003696 1.0e-21 106.7 80 56.2
HanXRQChr03g0065631 Helianthus annuus HOM05D003317 ORTHO05D003696 5.2e-21 104.4 95 51.6
Cpa.g.sc28.54 Carica papaya HOM05D003317 ORTHO05D003696 8.8e-21 103.6 66 71.2
Duzib168G0118 Durio zibethinus HOM05D003317 ORTHO05D003696 8.8e-21 103.6 63 77.8
THA.LOC104799577 Tarenaya hassleriana HOM05D003317 ORTHO05D003696 8.8e-21 103.6 82 61.0
Solyc08g061650.4 Solanum lycopersicum HOM05D003317 ORTHO05D003696 7.4e-20 100.5 78 61.5
Sopen08g017110 Solanum pennellii HOM05D003317 ORTHO05D003696 7.4e-20 100.5 78 61.5
HPP92_004371 Vanilla planifolia HOM05D003317 ORTHO05D003696 1.3e-19 99.8 81 63.0
Medtr4g125390 Medicago truncatula HOM05D003317 ORTHO05D003696 2.8e-19 98.6 69 66.7
Zm00001eb177300 Zea mays HOM05D003317 ORTHO05D003696 1.8e-18 95.9 79 59.5
Zm00001eb040360 Zea mays HOM05D003317 ORTHO05D003696 3.1e-18 95.1 75 61.3
Os08g0459100 Oryza sativa ssp. japonica HOM05D003317 ORTHO05D003696 2.6e-17 92.0 72 65.3
ATR0598G291 Amborella trichopoda HOM05D003317 ORTHO05D003696 1.3e-16 89.7 71 56.3
A03p10450 Brassica napus HOM05D003317 ORTHO05D003696 1.1e-15 86.7 79 54.4
BraA03t10357Z Brassica rapa HOM05D003317 ORTHO05D003696 1.1e-15 86.7 79 54.4
SEGI_25513 Sequoiadendron giganteum HOM05D003317 ORTHO05D003696 7.2e-15 84.0 72 58.3
SEGI_37822 Sequoiadendron giganteum HOM05D003317 ORTHO05D003696 9.4e-15 83.6 72 56.9
TPR.G9461 Trifolium pratense HOM05D003317 ORTHO05D003696 9.4e-15 83.6 59 64.4
AL6G32870 Arabidopsis lyrata HOM05D003317 ORTHO05D003696 1.2e-14 83.2 88 50.0
Psat4g155280 Pisum sativum HOM05D003317 ORTHO05D003696 1.2e-14 83.2 53 69.8
C03p12020 Brassica napus HOM05D003317 ORTHO05D003696 3.6e-14 81.6 79 51.9
BolC3t13673H Brassica oleracea HOM05D003317 ORTHO05D003696 3.6e-14 81.6 79 51.9
BcaB01g04757 Brassica carinata HOM05D003317 ORTHO05D003696 6.1e-14 80.9 79 54.4
Aa31sc133G60 Aethionema arabicum HOM05D003317 ORTHO05D003696 1.4e-13 79.7 53 66.0
CARHR191640 Cardamine hirsuta HOM05D003317 ORTHO05D003696 3.0e-13 78.6 79 50.6
Carub.0006s1954 Capsella rubella HOM05D003317 ORTHO05D003696 6.8e-13 77.4 88 44.3
Sp6g23290 Schrenkiella parvula HOM05D003317 ORTHO05D003696 7.5e-12 73.9 79 46.8
Sed0023098 Sechium edule HOM05D003317 ORTHO05D003696 1.3e-11 73.2 60 60.0
Hma1.2p1_0169F.1_g074590 Hydrangea macrophylla HOM05D003317 ORTHO05D003696 2.8e-11 72.0 44 70.5
Hma1.2p1_0169F.1_g074607 Hydrangea macrophylla HOM05D003317 ORTHO05D003696 2.8e-11 72.0 44 70.5
Lj1g0018915 Lotus japonicus HOM05D003317 ORTHO05D003696 9.1e-10 67.0 68 48.5
PRCOL_00004656 Prasinoderma coloniale HOM05D003317 ORTHO05D003696 2.2e-08 62.4 55 47.3
AUR62042996 Chenopodium quinoa HOM05D003317 ORTHO05D003696 6.5e-08 60.8 79 36.7
Psat4g017720 Pisum sativum HOM05D003317 ORTHO05D003696 3.2e-07 58.5 45 66.7
Cre12.g559050 Chlamydomonas reinhardtii HOM05D003317 ORTHO05D003696 2.1e-06 55.8 72 43.1


User provided reference genes

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