Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1073000 Malus domestica HOM05D004177 ORTHO05D004826 9.6e-214 746.5 364 100.0
MD15G1202800 Malus domestica HOM05D004177 ORTHO05D004826 3.5e-200 701.4 364 93.4
Prupe.7G214500 Prunus persica HOM05D004177 ORTHO05D004826 1.9e-190 669.1 364 87.9
Eucgr.C00926 Eucalyptus grandis HOM05D004177 ORTHO05D004826 2.6e-182 642.1 355 85.9
PGR142G0935 Punica granatum HOM05D004177 ORTHO05D004826 4.8e-181 637.9 353 85.3
THA.LOC104816571 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 1.8e-180 636.0 355 83.7
Cfa003130 Carpinus fangiana HOM05D004177 ORTHO05D004826 5.3e-180 634.4 353 84.4
FvH4_1g06830 Fragaria vesca HOM05D004177 ORTHO05D004826 5.3e-180 634.4 361 82.5
QL02p063435 Quercus lobata HOM05D004177 ORTHO05D004826 5.3e-180 634.4 350 84.9
CANSAT11G0575 Cannabis sativa HOM05D004177 ORTHO05D004826 9.1e-180 633.6 354 83.6
Ciclev10008698m.g Citrus clementina HOM05D004177 ORTHO05D004826 1.5e-179 632.9 350 84.9
RcHm_v2.0_Chr2g0092611 Rosa chinensis HOM05D004177 ORTHO05D004826 1.5e-179 632.9 364 81.6
CiPaw.03G219400 Carya illinoinensis HOM05D004177 ORTHO05D004826 4.5e-179 631.3 352 83.2
Psat7g081120 Pisum sativum HOM05D004177 ORTHO05D004826 5.9e-179 630.9 353 83.3
CiPaw.12G022300 Carya illinoinensis HOM05D004177 ORTHO05D004826 1.0e-178 630.2 357 84.0
Nn6g35409 Nelumbo nucifera HOM05D004177 ORTHO05D004826 1.0e-178 630.2 363 81.5
Manes.15G104600 Manihot esculenta HOM05D004177 ORTHO05D004826 1.7e-178 629.4 349 85.7
GSVIVG01008468001 Vitis vinifera HOM05D004177 ORTHO05D004826 2.2e-178 629.0 355 84.2
Atru.chr7.1532 Acer truncatum HOM05D004177 ORTHO05D004826 5.0e-178 627.9 355 82.5
Duzib114G0142 Durio zibethinus HOM05D004177 ORTHO05D004826 6.5e-178 627.5 355 82.3
Glyma.07G127600 Glycine max HOM05D004177 ORTHO05D004826 6.5e-178 627.5 353 83.0
THA.LOC104826863 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 6.5e-178 627.5 355 83.7
arahy.Tifrunner.gnm1.ann1.H1EJ8W Arachis hypogaea HOM05D004177 ORTHO05D004826 1.1e-177 626.7 350 83.4
arahy.Tifrunner.gnm1.ann1.TIR1N2 Arachis hypogaea HOM05D004177 ORTHO05D004826 1.1e-177 626.7 350 83.4
Sabra03G0136900 Salix brachista HOM05D004177 ORTHO05D004826 1.1e-177 626.7 355 83.1
TWI09G1015 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 1.1e-177 626.7 355 82.3
MELO3C005126.2 Cucumis melo HOM05D004177 ORTHO05D004826 7.2e-177 624.0 353 82.2
TAR636G0014 Trochodendron aralioides HOM05D004177 ORTHO05D004826 7.2e-177 624.0 353 84.1
Actinidia25277 Actinidia chinensis HOM05D004177 ORTHO05D004826 9.4e-177 623.6 356 81.5
Potri.003G186900 Populus trichocarpa HOM05D004177 ORTHO05D004826 9.4e-177 623.6 355 82.8
Thecc.10G003500 Theobroma cacao HOM05D004177 ORTHO05D004826 9.4e-177 623.6 355 82.0
CsaV3_5G024780 Cucumis sativus L. HOM05D004177 ORTHO05D004826 2.7e-176 622.1 350 82.0
VMungo0464G2175 Vigna mungo HOM05D004177 ORTHO05D004826 2.7e-176 622.1 353 82.4
Sed0022999 Sechium edule HOM05D004177 ORTHO05D004826 4.7e-176 621.3 353 82.2
BcaC06g32302 Brassica carinata HOM05D004177 ORTHO05D004826 2.3e-175 619.0 357 81.8
C09p70810 Brassica napus HOM05D004177 ORTHO05D004826 2.3e-175 619.0 357 81.8
Lalb_Chr24g0393931 Lupinus albus HOM05D004177 ORTHO05D004826 3.0e-175 618.6 354 81.4
Phvul.004G172700 Phaseolus vulgaris HOM05D004177 ORTHO05D004826 3.0e-175 618.6 353 82.2
Aa31LG11G6950 Aethionema arabicum HOM05D004177 ORTHO05D004826 3.9e-175 618.2 364 79.9
Hma1.2p1_1074F.1_g254310 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 3.9e-175 618.2 355 82.8
Sp6g36980 Schrenkiella parvula HOM05D004177 ORTHO05D004826 3.9e-175 618.2 363 80.4
TPR.G38463 Trifolium pratense HOM05D004177 ORTHO05D004826 3.9e-175 618.2 353 81.3
AT5G05920 Arabidopsis thaliana HOM05D004177 ORTHO05D004826 6.7e-175 617.5 363 80.4
Hma1.2p1_0663F.1_g198701 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 1.1e-174 616.7 355 81.4
Actinidia29891 Actinidia chinensis HOM05D004177 ORTHO05D004826 1.5e-174 616.3 356 81.7
Ca_18171_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 1.5e-174 616.3 350 81.7
ClCG01G007700 Citrullus lanatus HOM05D004177 ORTHO05D004826 1.5e-174 616.3 363 79.6
AL6G15840 Arabidopsis lyrata HOM05D004177 ORTHO05D004826 2.0e-174 615.9 362 80.4
Thhalv10013870m.g Eutrema salsugineum HOM05D004177 ORTHO05D004826 2.6e-174 615.5 362 80.1
AUR62007842 Chenopodium quinoa HOM05D004177 ORTHO05D004826 4.4e-174 614.8 355 80.3
Sc14g0000820 Simmondsia chinensis HOM05D004177 ORTHO05D004826 4.4e-174 614.8 351 82.1
AUR62003036 Chenopodium quinoa HOM05D004177 ORTHO05D004826 5.7e-174 614.4 355 80.6
Dinv36734 Davidia involucrata HOM05D004177 ORTHO05D004826 5.7e-174 614.4 355 82.3
Gorai.011G226300 Gossypium raimondii HOM05D004177 ORTHO05D004826 5.7e-174 614.4 358 80.4
Lj1g0019759 Lotus japonicus HOM05D004177 ORTHO05D004826 5.7e-174 614.4 352 82.1
Rhsim03G0234600 Rhododendron simsii HOM05D004177 ORTHO05D004826 5.7e-174 614.4 362 81.2
Ah.09g228420 Amaranthus hybridus HOM05D004177 ORTHO05D004826 9.7e-174 613.6 355 80.3
Gohir.D10G201600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 2.8e-173 612.1 358 80.4
A10p30370 Brassica napus HOM05D004177 ORTHO05D004826 3.7e-173 611.7 363 80.2
Aqoxy2G03855 Aquilegia oxysepala HOM05D004177 ORTHO05D004826 8.2e-173 610.5 357 79.6
FAN28G1160 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.1e-172 610.1 373 78.8
MBI04_g06223_MAGBIO Magnolia biondii HOM05D004177 ORTHO05D004826 5.3e-172 607.8 360 80.3
Cc06_g10990 Coffea canephora HOM05D004177 ORTHO05D004826 1.2e-171 606.7 354 80.8
AUR62027470 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.6e-171 606.3 353 81.0
Gorai.011G226400 Gossypium raimondii HOM05D004177 ORTHO05D004826 1.6e-171 606.3 358 79.9
Gohir.D10G201700 Gossypium hirsutum HOM05D004177 ORTHO05D004826 2.6e-171 605.5 358 79.9
BolC9t59847H Brassica oleracea HOM05D004177 ORTHO05D004826 4.5e-171 604.7 383 76.0
Migut.J00439 Erythranthe guttata HOM05D004177 ORTHO05D004826 4.5e-171 604.7 355 80.0
FAN26G2529 Fragaria x ananassa HOM05D004177 ORTHO05D004826 4.5e-171 604.7 372 78.2
vmacro00113 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 4.5e-171 604.7 351 81.8
Carub.0006s0480 Capsella rubella HOM05D004177 ORTHO05D004826 7.7e-171 604.0 362 78.2
PSO210G0074 Papaver somniferum HOM05D004177 ORTHO05D004826 1.0e-170 603.6 361 79.2
SalBow6G4427 Salvia bowleyana HOM05D004177 ORTHO05D004826 1.3e-170 603.2 349 81.1
BraA10t45083Z Brassica rapa HOM05D004177 ORTHO05D004826 2.2e-170 602.4 377 76.7
HanXRQChr09g0263461 Helianthus annuus HOM05D004177 ORTHO05D004826 1.1e-169 600.1 350 79.7
TPR.G9556 Trifolium pratense HOM05D004177 ORTHO05D004826 1.1e-169 600.1 356 80.9
PSO210G7296 Papaver somniferum HOM05D004177 ORTHO05D004826 3.2e-169 598.6 356 79.2
Gohir.A10G194600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 1.2e-168 596.7 358 79.1
BcaB05g21688 Brassica carinata HOM05D004177 ORTHO05D004826 1.6e-168 596.3 363 78.8
Lsat_1_v5_gn_8_88081 Lactuca sativa HOM05D004177 ORTHO05D004826 1.6e-168 596.3 350 78.9
SGA_v2.0_scaffold62G21577 Striga asiatica HOM05D004177 ORTHO05D004826 3.6e-168 595.1 348 80.5
HanXRQChr04g0112631 Helianthus annuus HOM05D004177 ORTHO05D004826 8.0e-168 594.0 353 78.8
Sopen02g025490 Solanum pennellii HOM05D004177 ORTHO05D004826 2.3e-167 592.4 362 77.6
BolC2t06219H Brassica oleracea HOM05D004177 ORTHO05D004826 4.0e-167 591.7 354 79.1
CAN.G1014.11 Capsicum annuum HOM05D004177 ORTHO05D004826 4.0e-167 591.7 364 77.7
ECA233G2252 Erigeron canadensis HOM05D004177 ORTHO05D004826 1.2e-166 590.1 345 79.4
Solyc02g080800.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 1.5e-166 589.7 357 78.4
Oeu052128.1 Olea europaea HOM05D004177 ORTHO05D004826 2.0e-166 589.3 340 82.1
Ca_14076_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 2.6e-166 589.0 350 79.4
MSTRG.19533 Avicennia marina HOM05D004177 ORTHO05D004826 4.4e-166 588.2 349 80.2
Nitab4.5_0002695g0050 Nicotiana tabacum HOM05D004177 ORTHO05D004826 1.4e-164 583.2 365 77.0
Lsat_1_v5_gn_8_88021 Lactuca sativa HOM05D004177 ORTHO05D004826 1.8e-164 582.8 355 75.5
Nitab4.5_0007963g0020 Nicotiana tabacum HOM05D004177 ORTHO05D004826 3.1e-164 582.0 373 75.1
BraA02t04865Z Brassica rapa HOM05D004177 ORTHO05D004826 5.3e-164 581.3 369 77.0
SHI02807 Sapria himalayana HOM05D004177 ORTHO05D004826 1.6e-163 579.7 372 73.1
CSS0022162 Camellia sinensis var. sinensis HOM05D004177 ORTHO05D004826 5.9e-163 577.8 374 74.9
DCAR_012005 Daucus carota HOM05D004177 ORTHO05D004826 5.9e-163 577.8 348 79.9
ECA236G1557 Erigeron canadensis HOM05D004177 ORTHO05D004826 2.9e-162 575.5 353 75.4
ATR0789G091 Amborella trichopoda HOM05D004177 ORTHO05D004826 3.2e-161 572.0 351 76.6
HPP92_011031 Vanilla planifolia HOM05D004177 ORTHO05D004826 1.2e-160 570.1 354 78.0
Haze_25874 Corylus avellana HOM05D004177 ORTHO05D004826 6.1e-160 567.8 375 72.8
unitig_27.g24734 Utricularia gibba HOM05D001806 ORTHO05D004826 3.0e-159 565.5 348 77.6
Solyc02g080790.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 6.8e-159 564.3 362 73.5
Sopen02g025480 Solanum pennellii HOM05D004177 ORTHO05D004826 2.0e-158 562.8 362 73.5
EL10Ac6g14643 Beta vulgaris HOM05D004177 ORTHO05D004826 3.4e-158 562.0 355 75.5
PSO596G0001 Papaver somniferum HOM05D004177 ORTHO05D004826 7.5e-158 560.8 353 74.2
FAN19G3030 Fragaria x ananassa HOM05D004177 ORTHO05D004826 8.3e-157 557.4 361 75.1
Cpa.g.sc19.251 Carica papaya HOM05D004177 ORTHO05D004826 1.1e-156 557.0 350 76.6
COL.COLO4_19342 Corchorus olitorius HOM05D004177 ORTHO05D004826 2.4e-156 555.8 355 75.5
Os03g0740600 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 2.4e-156 555.8 355 74.4
SEGI_08410 Sequoiadendron giganteum HOM05D004177 ORTHO05D004826 1.2e-155 553.5 350 74.0
FAN23G1990 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.0e-154 550.4 361 73.4
HPP92_001732 Vanilla planifolia HOM05D004177 ORTHO05D004826 2.1e-152 542.7 355 71.8
HPP92_014582 Vanilla planifolia HOM05D004177 ORTHO05D004826 3.6e-152 542.0 355 70.4
AUR62031232 Chenopodium quinoa HOM05D004177 ORTHO05D004826 4.0e-151 538.5 353 73.7
Gohir.A10G194500 Gossypium hirsutum HOM05D004177 ORTHO05D004826 1.5e-150 536.6 358 73.2
Zm00001eb215220 Zea mays HOM05D004177 ORTHO05D004826 2.0e-150 536.2 355 73.5
Pp3c2_9490 Physcomitrium patens HOM05D004177 ORTHO05D004826 2.6e-150 535.8 356 70.2
FAN26G0736 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.7e-149 533.1 365 72.6
CARHR207300 Cardamine hirsuta HOM05D004177 ORTHO05D004826 2.8e-149 532.3 299 82.9
SMO337G0022 Selaginella moellendorffii HOM05D004177 ORTHO05D004826 3.7e-149 531.9 351 70.7
Mapoly0001s0219 Marchantia polymorpha HOM05D004177 ORTHO05D004826 6.3e-149 531.2 357 68.6
Zm00001eb085620 Zea mays HOM05D004177 ORTHO05D004826 7.0e-148 527.7 372 68.8
AagrBONN_evm.TU.Sc2ySwM_344.1392 Anthoceros agrestis HOM05D004177 ORTHO05D004826 5.6e-145 518.1 334 69.8
TWI12G1142 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 2.1e-144 516.2 278 87.1
vmacro06273 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 2.1e-144 516.2 426 62.0
AagrBONN_evm.TU.Sc2ySwM_344.3440 Anthoceros agrestis HOM05D004177 ORTHO05D004826 7.5e-142 507.7 365 65.5
MELO3C025268.2 Cucumis melo HOM05D004177 ORTHO05D004826 9.2e-140 500.7 350 70.0
MCO16G096 Micromonas commoda HOM05D004177 ORTHO05D004826 1.8e-135 486.5 346 64.7
PRCOL_00001978 Prasinoderma coloniale HOM05D004177 ORTHO05D004826 5.2e-135 485.0 350 63.1
HPP92_016636 Vanilla planifolia HOM05D004177 ORTHO05D004826 4.4e-134 481.9 294 76.9
CDE04G2922 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 1.5e-126 456.8 351 65.0
Dinv42291 Davidia involucrata HOM05D004177 ORTHO05D004826 8.3e-125 451.1 235 89.8
Cre01.g018950 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 7.8e-123 444.5 313 64.9
Cre08.g369800 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 1.7e-122 443.4 332 59.3
Peaxi162Scf00178g01719 Petunia axillaris HOM05D004177 ORTHO05D004826 1.9e-121 439.9 708 39.3
Sed0017389 Sechium edule HOM05D004177 ORTHO05D004826 8.7e-114 414.5 260 72.7
Haze_27186 Corylus avellana HOM05D004177 ORTHO05D004826 1.1e-108 397.5 350 53.4
Nn4g24829 Nelumbo nucifera HOM05D004177 ORTHO05D004826 5.6e-105 385.2 241 73.4
Os09g0421100 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 1.9e-100 370.2 336 57.7
SGA_v2.0_scaffold439G51649 Striga asiatica HOM05D004177 ORTHO05D004826 4.0e-95 352.4 216 77.3
CBR_g31495 Chara braunii HOM05D004177 ORTHO05D004826 1.3e-93 347.4 247 64.4
AagrBONN_evm.TU.Sc2ySwM_362.473 Anthoceros agrestis HOM05D004177 ORTHO05D004826 2.5e-92 343.2 334 53.3
SGA_v2.0_scaffold439G51638 Striga asiatica HOM05D004177 ORTHO05D004826 8.7e-82 308.1 202 72.8
Hund18418 Selenicereus undatus HOM05D004177 ORTHO05D004826 1.0e-77 294.7 290 54.8
CAN.G744.9 Capsicum annuum HOM05D004177 ORTHO05D004826 1.2e-49 201.4 135 71.9
HanXRQChr04g0126441 Helianthus annuus HOM05D004177 ORTHO05D004826 7.2e-44 182.2 100 87.0
AagrBONN_evm.TU.Sc2ySwM_117.1724 Anthoceros agrestis HOM05D004177 ORTHO05D004826 2.7e-43 180.3 171 52.6
Oeu062209.1 Olea europaea HOM05D004177 ORTHO05D004826 6.1e-43 179.1 124 74.2
Oeu062208.1 Olea europaea HOM05D004177 ORTHO05D004826 1.0e-42 178.3 124 73.4
Oeu062213.1 Olea europaea HOM05D004177 ORTHO05D004826 3.0e-42 176.8 132 70.5
HanXRQChr13g0409461 Helianthus annuus HOM05D004177 ORTHO05D004826 4.0e-42 176.4 116 78.4
Hund18419 Selenicereus undatus HOM05D004177 ORTHO05D004826 1.7e-40 171.0 114 71.9
Oeu062211.1 Olea europaea HOM05D004177 ORTHO05D004826 1.1e-39 168.3 123 69.9
Actinidia03786 Actinidia chinensis HOM05D004177 ORTHO05D004826 1.0e-37 161.8 93 87.1
HPP92_016662 Vanilla planifolia HOM05D004177 ORTHO05D004826 1.5e-36 157.9 98 72.4
C02p02540 Brassica napus HOM05D001260 ORTHO05D002424 3.3e-36 156.8 123 66.7
Aa31sc206G30 Aethionema arabicum HOM05D005780 ORTHO05D004826 1.3e-32 144.8 128 60.2
HPP92_016663 Vanilla planifolia HOM05D004177 ORTHO05D004826 3.5e-30 136.7 113 61.1
RcHm_v2.0_Chr6g0296851 Rosa chinensis HOM05D004177 ORTHO05D004826 2.9e-24 117.1 71 81.7
Actinidia39745 Actinidia chinensis HOM05D004177 ORTHO05D004826 2.7e-22 110.5 68 76.5
Oeu039826.4 Olea europaea HOM05D002851 ORTHO05D003084 2.7e-22 110.5 69 76.8
Oeu056107.1 Olea europaea HOM05D004177 ORTHO05D004826 1.0e-21 108.6 78 71.8
AUR62030112 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.7e-16 91.3 61 72.1
Peaxi162Scf00287g00176 Petunia axillaris HOM05D004177 ORTHO05D004826 1.4e-15 88.2 84 54.8
CDE02G3953 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 2.4e-15 87.4 61 67.2
Nn4g24830 Nelumbo nucifera HOM05D004177 ORTHO05D004826 5.1e-13 79.7 129 44.2
HanXRQChr13g0409471 Helianthus annuus HOM05D004177 ORTHO05D004826 9.5e-12 75.5 66 57.6
Pp3c1_32420 Physcomitrium patens HOM05D004177 ORTHO05D004826 9.5e-12 75.5 49 65.3
Medtr8g079080 Medicago truncatula HOM05D004177 ORTHO05D004826 4.9e-08 63.2 41 70.7
VMungo0647G1164 Vigna mungo HOM05D004177 ORTHO05D004826 3.5e-06 57.0 31 83.9


User provided reference genes

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