Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 0.0e+00 1275.0 637 100.0
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 6.3e-269 930.6 680 75.3
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 2.9e-250 868.6 680 70.9
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 5.0e-234 814.7 681 67.1
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 4.0e-231 805.1 684 65.4
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 3.4e-230 802.0 684 65.4
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 3.7e-229 798.5 680 65.0
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.1e-217 760.4 657 64.4
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 1.5e-209 733.4 672 61.8
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 1.8e-207 726.5 693 60.3
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 2.4e-204 716.1 682 58.9
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 9.2e-204 714.1 682 60.7
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 7.3e-201 704.5 686 59.2
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 9.9e-198 694.1 692 57.8
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 1.7e-197 693.3 681 57.7
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 1.1e-193 680.6 699 56.1
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 1.1e-193 680.6 699 56.1
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 5.6e-193 678.3 684 56.7
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 8.1e-192 674.5 686 56.3
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 7.1e-188 661.4 678 56.3
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 7.1e-188 661.4 683 56.1
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 7.1e-188 661.4 926 45.8
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 3.0e-186 656.0 681 55.4
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 9.6e-185 651.0 690 53.2
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 2.8e-184 649.4 685 54.5
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 4.8e-184 648.7 684 54.8
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 5.3e-183 645.2 688 55.2
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 8.4e-181 637.9 684 54.1
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 1.4e-180 637.1 778 50.4
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 2.5e-180 636.3 686 53.8
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 2.5e-180 636.3 686 53.6
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 3.2e-180 636.0 693 53.2
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.8e-178 630.2 692 53.2
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 3.9e-178 629.0 684 52.8
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 5.1e-178 628.6 692 53.2
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 4.3e-177 625.5 677 54.7
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 1.4e-175 620.5 691 52.8
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 9.0e-175 617.8 678 54.1
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 2.6e-174 616.3 691 51.5
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 1.0e-173 614.4 685 53.6
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 1.7e-173 613.6 684 53.1
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 7.1e-172 608.2 683 51.7
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 9.3e-172 607.8 711 51.9
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 1.8e-170 603.6 679 52.9
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 2.3e-170 603.2 678 53.5
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 2.3e-170 603.2 693 52.2
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 3.9e-170 602.4 687 52.0
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 2.5e-169 599.7 683 51.2
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 2.5e-169 599.7 679 52.7
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 5.7e-169 598.6 693 51.5
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 1.1e-167 594.3 696 51.7
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 1.4e-167 594.0 692 52.6
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 1.4e-167 594.0 693 51.2
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 1.4e-167 594.0 693 51.2
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 2.4e-167 593.2 690 51.9
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 6.9e-167 591.7 651 53.5
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 1.2e-166 590.9 682 52.5
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 1.5e-166 590.5 685 52.6
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 7.7e-166 588.2 692 50.6
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 7.7e-166 588.2 696 50.6
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 1.1e-164 584.3 673 52.3
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 2.5e-164 583.2 679 50.7
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 1.0e-162 577.8 678 50.7
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 2.3e-162 576.6 683 51.0
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 2.3e-162 576.6 682 51.8
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 3.0e-162 576.2 686 49.7
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 2.5e-161 573.2 583 56.6
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 9.7e-161 571.2 677 49.8
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 1.7e-160 570.5 678 50.7
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 3.7e-160 569.3 684 50.4
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 5.3e-159 565.5 686 49.6
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 1.2e-158 564.3 687 50.4
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 2.6e-158 563.1 692 48.7
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 5.5e-156 555.4 761 45.6
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 2.7e-155 553.1 660 50.3
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 1.1e-151 541.2 672 49.4
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 1.8e-151 540.4 680 47.9
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 4.1e-151 539.3 731 45.6
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 2.6e-150 536.6 680 47.9
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 3.5e-150 536.2 689 47.9
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 5.9e-150 535.4 680 48.1
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 7.7e-150 535.0 685 47.9
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 6.5e-149 531.9 685 47.4
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 7.2e-148 528.5 686 47.2
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 4.7e-147 525.8 683 47.7
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 6.7e-146 521.9 685 46.6
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 8.8e-146 521.5 685 46.7
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 1.1e-145 521.2 674 47.8
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 1.5e-145 520.8 689 47.2
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 1.1e-143 514.6 681 47.3
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 3.1e-143 513.1 686 45.6
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 1.2e-139 501.1 678 45.6
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 1.4e-138 497.7 494 55.9
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 1.4e-138 497.7 678 45.3
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 6.8e-138 495.4 678 44.5
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 2.2e-136 490.3 684 44.4
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 1.2e-126 458.0 649 44.1
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 1.6e-126 457.6 692 42.1
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 3.5e-118 429.9 564 45.2
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 4.9e-112 409.5 498 47.0
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 3.2e-111 406.8 692 38.7
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 4.0e-106 389.8 732 35.4
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 9.8e-105 385.2 677 37.5
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 2.2e-104 384.0 687 37.1
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 2.4e-79 300.8 554 37.0
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 3.8e-64 250.4 549 34.6
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 1.1e-63 248.8 317 50.5
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 2.3e-61 241.1 397 40.3
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 5.3e-50 203.4 747 26.5
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 6.9e-50 203.0 342 40.4
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 2.2e-43 181.4 663 25.2
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.4e-42 177.9 145 67.6
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 7.7e-41 172.9 163 55.2
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 6.5e-40 169.9 679 26.7
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 1.1e-34 152.5 146 60.3
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 4.4e-20 104.0 139 40.3
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 9.8e-20 102.8 494 24.1
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 1.3e-19 102.4 79 65.8
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 4.1e-18 97.4 58 72.4
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 9.1e-18 96.3 58 84.5
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 8.0e-14 83.2 117 46.2
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 2.3e-13 81.6 70 55.7
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 1.7e-11 75.5 70 50.0
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 1.1e-07 62.8 268 26.9
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.1e-07 62.8 42 76.2
Pp3c19_8370 Physcomitrium patens HOM05D005966 ORTHO05D007584 4.3e-07 60.8 130 33.8
TAR362G1246 Trochodendron aralioides HOM05D005966 ORTHO05D007584 2.8e-06 58.2 37 78.4


User provided reference genes

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