Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 3645.1 1881 100.0
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 3385.1 1886 92.0
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 3151.3 1886 86.2
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 3135.9 1886 85.1
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 3120.1 1886 84.7
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 3103.2 1886 84.5
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 3059.2 1886 83.6
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 3033.0 1892 82.8
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 2987.2 1886 81.2
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 2948.3 1883 79.6
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 2930.6 1885 79.8
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 2927.9 1889 79.1
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 2907.9 1890 78.4
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 2876.3 1919 78.0
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 2867.4 1887 77.3
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 2853.5 1904 77.7
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 2834.3 1888 76.6
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 2828.9 1885 76.3
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 2824.7 1913 75.8
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 2820.4 1887 76.4
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 2800.0 1902 75.3
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 2797.7 1885 75.5
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 2795.8 1887 75.6
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 2781.5 1889 74.9
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 2778.0 1893 75.0
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 2775.7 1893 74.6
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 2770.7 1893 74.9
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 2760.7 1889 74.9
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 2758.0 1893 74.5
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2752.6 1885 74.9
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 2746.5 1947 72.8
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 2729.5 1890 74.8
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 2728.0 2016 70.8
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 2725.3 1881 74.0
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 2713.3 1711 80.9
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 2687.5 1883 72.2
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 2675.2 1880 72.1
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 2673.3 1886 71.7
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2655.6 1889 71.5
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 2652.1 1881 71.0
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2650.5 1884 71.7
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 2647.5 1889 71.5
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 2641.7 1889 71.5
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2640.9 1883 71.5
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 2639.0 1886 71.1
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 2636.7 1889 71.3
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 2627.8 1891 71.2
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 2586.6 1881 70.9
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 2582.0 1885 69.5
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 2579.3 1880 69.7
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 2576.2 1879 69.9
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 2574.7 1880 69.4
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 2568.5 1880 69.6
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2567.7 1898 69.9
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 2567.3 1881 69.5
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 2567.0 1956 68.4
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2561.9 1893 70.0
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 2557.7 1889 69.1
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 2554.6 1952 67.7
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2546.2 1904 69.5
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 2545.8 2313 60.4
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2544.6 1903 69.2
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 2528.1 1635 78.2
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 2511.1 1890 69.2
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 2504.6 2017 65.1
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 2494.9 1881 67.4
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 2475.7 1921 66.7
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 2468.3 1883 68.0
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2463.3 1887 67.2
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2462.6 1885 67.2
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2461.0 1891 68.0
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 2457.9 1886 67.2
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 2438.3 1925 66.9
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2430.2 1585 77.3
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 2412.5 1883 65.8
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2410.9 1891 66.7
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 2280.4 1501 77.5
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2275.0 1473 78.3
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 2005.3 1459 71.6
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1982.6 1581 64.1
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1921.4 1429 69.2
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1872.8 1185 79.3
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1813.9 1909 50.1
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1749.6 1426 64.4
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1747.3 1914 49.0
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1690.6 1920 48.3
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1671.0 1448 59.7
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1647.5 1886 52.3
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1585.1 1925 45.6
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1511.1 1188 65.4
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 0.0e+00 1384.8 1241 58.4
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1330.5 840 78.3
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1317.8 957 71.6
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1315.4 1855 41.5
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 0.0e+00 1270.4 1121 61.1
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1232.6 1643 48.1
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1129.0 1643 45.2
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 0.0e+00 1100.5 1246 50.2
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 2.4e-308 1063.1 780 68.1
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 4.0e-279 966.1 783 61.9
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.6e-267 927.5 767 60.8
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 2.6e-262 910.2 698 69.1
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 2.9e-253 880.2 692 66.2
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 1.5e-249 867.8 1054 50.8
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 2.7e-219 767.3 607 65.9
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.3e-210 737.6 700 54.7
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 1.3e-208 731.9 519 72.4
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 2.5e-204 717.6 1032 40.1
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 7.9e-203 712.6 1044 41.2
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.0e-186 659.1 510 68.2
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.4e-167 595.5 512 63.5
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 3.2e-135 488.0 400 61.5
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 8.1e-131 473.4 412 65.3
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 6.4e-128 463.8 420 60.7
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 1.1e-116 426.4 299 73.2
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 6.5e-104 384.0 311 66.9
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 1.9e-103 382.5 278 73.7
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 7.9e-102 377.1 227 85.5
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 8.8e-101 373.6 210 87.6
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 5.3e-98 364.4 329 59.6
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 1.1e-95 356.7 329 59.9
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 1.0e-93 350.1 320 60.0
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 2.6e-89 335.5 330 58.8
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 1.1e-87 330.1 264 68.9
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 6.1e-86 324.3 300 59.7
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 2.2e-83 315.8 366 48.9
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 6.7e-77 294.3 176 84.1
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 4.4e-68 265.0 357 49.9
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 5.9e-65 254.6 227 62.1
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 5.9e-65 254.6 227 62.1
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 6.6e-64 251.1 182 69.2
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 1.5e-60 240.0 1740 22.3
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 2.6e-60 239.2 391 43.5
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 7.0e-58 231.1 211 63.0
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 1.0e-56 227.3 400 42.2
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 5.0e-56 224.9 299 46.2
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.7e-51 209.9 150 72.7
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 1.4e-50 206.8 216 55.1
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.7e-48 199.9 179 60.3
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 5.1e-40 171.8 151 63.6
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 7.3e-39 167.9 121 72.7
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 3.1e-37 162.5 325 33.2
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 4.4e-36 158.7 126 65.1
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 2.4e-34 152.9 82 82.9
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 2.7e-33 149.4 767 23.7
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.5e-33 149.1 122 57.4
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 4.6e-33 148.7 96 79.2
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 1.6e-30 140.2 132 59.1
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 2.8e-30 139.4 171 49.7
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 8.1e-30 137.9 117 60.7
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 1.1e-29 137.5 147 52.4
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 4.0e-29 135.6 75 89.3
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 6.8e-29 134.8 983 23.7
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 3.4e-28 132.5 109 71.6
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 2.2e-27 129.8 81 80.2
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.5e-25 122.5 115 48.7
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.9e-23 116.7 252 34.5
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 3.6e-22 112.5 76 68.4
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 1.3e-19 104.0 58 87.9
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 3.5e-17 95.9 61 85.2
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.1e-15 90.9 80 56.2
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 4.3e-15 89.0 55 74.5
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 4.8e-14 85.5 102 47.1
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 1.8e-13 83.6 102 46.1
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 6.9e-13 81.6 89 56.2
SHI03418 Sapria himalayana HOM05D000105 ORTHO05D000023 7.6e-12 78.2 144 41.7
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 3.8e-11 75.9 74 63.5
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 4.9e-11 75.5 55 69.1
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.4e-10 73.2 64 56.2
FvH4_1g02070 Fragaria vesca HOM05D000524 ORTHO05D035235 1.2e-09 70.9 49 69.4
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 3.5e-09 69.3 64 46.9
CAN.G1616.4 Capsicum annuum HOM05D003776 ORTHO05D004459 4.6e-09 68.9 52 73.1
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 4.6e-09 68.9 37 78.4
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 6.0e-09 68.6 43 67.4
RcHm_v2.0_Chr5g0007271 Rosa chinensis HOM05D003776 ORTHO05D004459 2.3e-08 66.6 41 78.0
RcHm_v2.0_Chr5g0007071 Rosa chinensis HOM05D003776 ORTHO05D004459 3.9e-08 65.9 40 82.5
SEGI_26904 Sequoiadendron giganteum HOM05D000464 ORTHO05D006292 6.7e-08 65.1 54 59.3
Sed0006485 Sechium edule HOM05D003776 ORTHO05D004459 1.5e-07 63.9 49 69.4
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 9.6e-07 61.2 34 76.5
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 8.1e-06 58.2 37 75.7


User provided reference genes

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