Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 5.5e-53 210.7 106 100.0
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 2.8e-49 198.4 105 95.2
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 7.7e-47 190.3 105 91.4
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 3.6e-44 181.4 105 85.7
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 9.8e-42 173.3 105 78.1
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 2.8e-41 171.8 105 78.1
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 3.7e-41 171.4 105 80.0
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 4.9e-41 171.0 105 80.0
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 4.9e-41 171.0 105 80.0
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 1.1e-40 169.9 103 79.6
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 1.4e-40 169.5 105 80.0
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 2.4e-40 168.7 103 78.6
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 2.4e-40 168.7 105 78.1
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 2.4e-40 168.7 105 79.0
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 3.1e-40 168.3 105 78.1
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 3.1e-40 168.3 103 77.7
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 5.4e-40 167.5 100 80.0
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 5.4e-40 167.5 100 79.0
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 7.0e-40 167.2 105 78.1
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 9.2e-40 166.8 105 75.2
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 1.2e-39 166.4 105 76.2
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 1.6e-39 166.0 103 76.7
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 1.6e-39 166.0 103 76.7
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 2.0e-39 165.6 105 76.2
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 4.5e-39 164.5 103 77.7
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.0e-38 163.3 100 79.0
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 1.0e-38 163.3 103 76.7
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 1.3e-38 162.9 97 79.4
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 1.3e-38 162.9 99 78.8
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 1.3e-38 162.9 99 78.8
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 1.3e-38 162.9 99 77.8
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 1.7e-38 162.5 103 76.7
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 2.3e-38 162.2 105 73.3
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 2.9e-38 161.8 105 71.4
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 2.9e-38 161.8 99 79.8
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.9e-38 161.8 103 75.7
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 3.8e-38 161.4 99 76.8
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 3.8e-38 161.4 103 74.8
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 3.8e-38 161.4 103 74.8
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 5.0e-38 161.0 105 76.2
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 5.0e-38 161.0 100 78.0
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 5.0e-38 161.0 103 74.8
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 6.6e-38 160.6 103 72.8
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 8.6e-38 160.2 100 75.0
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 8.6e-38 160.2 100 75.0
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 8.6e-38 160.2 100 75.0
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 8.6e-38 160.2 100 75.0
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 8.6e-38 160.2 100 75.0
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 8.6e-38 160.2 105 74.3
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 8.6e-38 160.2 105 74.3
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 8.6e-38 160.2 103 71.8
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 8.6e-38 160.2 99 74.7
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 8.6e-38 160.2 105 71.4
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.1e-37 159.8 105 73.3
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 1.1e-37 159.8 105 74.3
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 1.5e-37 159.5 105 73.3
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 1.5e-37 159.5 99 75.8
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 1.5e-37 159.5 100 79.0
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 1.9e-37 159.1 100 74.0
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 1.9e-37 159.1 100 74.0
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 1.9e-37 159.1 100 74.0
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 1.9e-37 159.1 101 74.3
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 1.9e-37 159.1 105 69.5
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 2.5e-37 158.7 103 71.8
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 2.5e-37 158.7 105 72.4
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 2.5e-37 158.7 100 76.0
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 3.3e-37 158.3 100 76.0
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 3.3e-37 158.3 101 74.3
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 3.3e-37 158.3 103 73.8
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 4.3e-37 157.9 103 70.9
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 4.3e-37 157.9 105 69.5
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 5.6e-37 157.5 105 72.4
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 9.5e-37 156.8 95 76.8
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 9.5e-37 156.8 95 76.8
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 1.2e-36 156.4 100 73.0
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 1.2e-36 156.4 99 75.8
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 1.2e-36 156.4 104 72.1
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 1.2e-36 156.4 100 76.0
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 1.6e-36 156.0 100 74.0
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 2.8e-36 155.2 105 68.6
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 3.6e-36 154.8 100 75.0
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 3.6e-36 154.8 91 81.3
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 3.6e-36 154.8 103 69.9
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 4.7e-36 154.5 105 75.2
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 4.7e-36 154.5 103 69.9
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 6.1e-36 154.1 101 73.3
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 1.0e-35 153.3 103 70.9
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 1.0e-35 153.3 103 69.9
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 1.4e-35 152.9 101 71.3
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 1.4e-35 152.9 135 59.3
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 2.3e-35 152.1 103 69.9
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 2.3e-35 152.1 103 70.9
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 3.0e-35 151.8 107 69.2
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 3.0e-35 151.8 83 86.7
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 4.0e-35 151.4 104 66.3
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 4.0e-35 151.4 99 71.7
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.2e-34 149.8 89 80.9
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 2.6e-34 148.7 97 75.3
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 3.4e-34 148.3 110 64.5
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 5.7e-34 147.5 105 68.6
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 7.5e-34 147.1 100 75.0
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 3.7e-33 144.8 105 67.6
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 2.4e-32 142.1 101 69.3
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 2.4e-32 142.1 105 70.5
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 3.2e-32 141.7 102 68.6
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 5.4e-32 141.0 105 65.7
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 9.2e-32 140.2 97 67.0
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 1.2e-31 139.8 84 77.4
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.2e-31 139.8 105 65.7
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 1.6e-31 139.4 103 68.9
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 2.0e-31 139.0 103 68.9
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 1.0e-30 136.7 101 64.4
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 1.0e-30 136.7 100 63.0
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 5.0e-30 134.4 100 63.0
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 8.6e-30 133.7 98 69.4
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 8.6e-30 133.7 105 64.8
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 5.6e-29 131.0 105 60.0
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 1.0e-27 126.7 96 61.5
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 1.4e-27 126.3 100 59.0
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 5.2e-27 124.4 100 58.0
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 6.8e-27 124.0 103 62.1
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 6.8e-27 124.0 103 62.1
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 8.9e-27 123.6 104 58.7
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 4.4e-26 121.3 105 56.2
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 5.8e-26 120.9 111 60.4
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 5.8e-26 120.9 90 63.3
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 9.8e-26 120.2 100 54.0
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 2.2e-25 119.0 87 69.0
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 6.4e-25 117.5 105 61.0
BolC1t02723H Brassica oleracea HOM05D004883 ORTHO05D005766 1.1e-24 116.7 95 62.1
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 3.2e-24 115.2 94 61.7
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 5.4e-24 114.4 100 55.0
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 3.9e-22 108.2 101 56.4
Os01g0357200 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 5.6e-21 104.4 86 61.6
RcHm_v2.0_Chr5g0032801 Rosa chinensis HOM05D004883 ORTHO05D005766 2.3e-19 99.0 78 66.7
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 1.5e-18 96.3 90 56.7
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 9.8e-18 93.6 94 52.1
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 1.7e-17 92.8 63 69.8
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 1.4e-16 89.7 63 68.3
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 4.6e-15 84.7 103 45.6
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 4.7e-12 74.7 62 62.9
C09p72490 Brassica napus HOM05D004883 ORTHO05D005766 8.1e-12 73.9 47 74.5
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 8.1e-12 73.9 105 45.7
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 5.2e-11 71.2 42 76.2
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 3.4e-10 68.6 42 73.8
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 4.4e-10 68.2 103 40.8
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 1.7e-09 66.2 86 44.2
MELO3C033382.2 Cucumis melo HOM05D004883 ORTHO05D005766 3.8e-09 65.1 40 70.0


User provided reference genes

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