Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 3.9e-61 238.0 129 100.0
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 8.2e-51 203.8 110 99.1
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 8.2e-51 203.8 110 99.1
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 3.8e-48 194.9 110 97.3
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 3.6e-46 188.3 101 99.0
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 4.0e-37 158.3 85 98.8
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 9.1e-34 147.1 99 80.8
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 5.9e-33 144.4 98 75.5
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 2.5e-31 139.0 96 74.0
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 1.5e-28 129.8 98 69.4
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 3.4e-28 128.6 98 69.4
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 1.0e-24 117.1 96 64.6
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 1.7e-24 116.3 98 63.3
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 2.3e-24 115.9 98 63.3
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 6.6e-24 114.4 98 62.2
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 6.6e-24 114.4 103 61.2
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 1.1e-23 113.6 103 60.2
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 4.3e-23 111.7 95 62.1
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 5.6e-23 111.3 98 62.2
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 1.2e-22 110.2 99 56.6
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 1.2e-22 110.2 103 58.3
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 1.2e-22 110.2 98 62.2
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 1.6e-22 109.8 100 60.0
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 1.6e-22 109.8 99 55.6
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 2.8e-22 109.0 94 62.8
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 6.1e-22 107.8 104 55.8
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 6.1e-22 107.8 104 55.8
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 8.0e-22 107.5 95 61.1
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 1.0e-21 107.1 98 61.2
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 2.3e-21 105.9 98 58.2
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 3.0e-21 105.5 98 57.1
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 4.0e-21 105.1 95 60.0
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 1.5e-20 103.2 98 56.1
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 1.5e-20 103.2 98 58.2
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 3.4e-20 102.1 95 58.9
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 9.8e-20 100.5 96 56.2
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 2.2e-19 99.4 98 54.1
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 2.2e-19 99.4 98 57.1
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 6.4e-19 97.8 95 55.8
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 6.4e-19 97.8 95 60.0
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 8.3e-19 97.4 95 58.9
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 8.3e-19 97.4 95 58.9
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 1.4e-18 96.7 98 54.1
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.8e-18 96.3 98 55.1
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 2.4e-18 95.9 95 54.7
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 3.2e-18 95.5 97 54.6
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 4.1e-18 95.1 101 50.5
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 7.0e-18 94.4 95 52.6
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 7.0e-18 94.4 95 51.6
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 9.2e-18 94.0 95 54.7
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 1.2e-17 93.6 94 53.2
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.6e-17 93.2 95 53.7
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 5.9e-17 91.3 95 52.6
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 7.8e-17 90.9 95 52.6
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 1.0e-16 90.5 98 50.0
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 1.0e-16 90.5 98 50.0
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 1.3e-16 90.1 95 52.6
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 1.7e-16 89.7 99 50.5
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 1.7e-16 89.7 104 46.2
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 3.0e-16 89.0 95 48.4
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 3.9e-16 88.6 100 51.0
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 3.9e-16 88.6 100 51.0
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 5.0e-16 88.2 95 52.6
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 5.0e-16 88.2 100 50.0
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 6.6e-16 87.8 95 50.5
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 1.5e-15 86.7 100 47.0
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 3.3e-15 85.5 100 47.0
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 4.3e-15 85.1 95 51.6
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 4.3e-15 85.1 100 48.0
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 4.3e-15 85.1 100 49.0
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 7.3e-15 84.3 99 48.5
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 9.5e-15 84.0 100 48.0
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 8.0e-14 80.9 95 48.4
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 1.4e-13 80.1 96 45.8
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 2.3e-13 79.3 100 49.0
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 2.3e-13 79.3 96 46.9
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 3.1e-13 79.0 95 45.3
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 6.8e-13 77.8 99 49.5
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 6.8e-13 77.8 99 49.5
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.2e-12 77.0 99 43.4
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 4.4e-12 75.1 95 46.3
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 5.8e-12 74.7 95 45.3
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 9.8e-12 73.9 99 44.4
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 1.3e-11 73.6 95 45.3
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 1.3e-11 73.6 95 45.3
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 1.3e-11 73.6 95 45.3
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 1.3e-11 73.6 95 45.3
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 1.7e-11 73.2 95 45.3
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 2.2e-11 72.8 95 44.2
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 2.9e-11 72.4 95 44.2
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 3.7e-11 72.0 98 41.8
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 6.4e-11 71.2 99 44.4
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 8.3e-11 70.9 95 44.2
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 8.3e-11 70.9 95 44.2
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 1.1e-10 70.5 99 45.5
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 1.1e-10 70.5 98 40.8
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 1.1e-10 70.5 95 44.2
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 1.1e-10 70.5 95 42.1
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 1.4e-10 70.1 98 43.9
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 1.4e-10 70.1 98 41.8
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 4.1e-10 68.6 98 43.9
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 9.2e-10 67.4 95 43.2
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 1.6e-09 66.6 95 44.2
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 1.6e-09 66.6 95 44.2
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 7.8e-09 64.3 97 40.2
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 3.9e-08 62.0 99 36.4
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 5.0e-08 61.6 95 37.9
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 5.0e-08 61.6 95 37.9
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 1.1e-07 60.5 95 41.1
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 3.3e-07 58.9 95 36.8
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.2e-06 57.0 111 36.0
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.6e-06 55.5 111 35.1


User provided reference genes

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