Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 1.3e-94 349.7 180 100.0
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 5.2e-51 204.9 174 54.0
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 3.3e-50 202.2 175 54.3
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 1.7e-49 199.9 178 53.4
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 1.1e-48 197.2 174 52.9
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 1.4e-48 196.8 178 51.7
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 5.3e-48 194.9 177 52.5
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 7.0e-48 194.5 177 52.5
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 9.1e-48 194.1 177 52.5
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 1.6e-47 193.4 177 52.5
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 1.6e-47 193.4 177 52.5
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 3.5e-47 192.2 177 52.0
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 4.5e-47 191.8 178 51.7
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 5.9e-47 191.4 177 52.0
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 5.9e-47 191.4 173 53.8
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 7.7e-47 191.0 177 49.2
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 7.7e-47 191.0 178 50.6
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 1.7e-46 189.9 178 51.1
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 1.7e-46 189.9 177 51.4
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 1.7e-46 189.9 177 50.8
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 1.7e-46 189.9 175 50.9
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 2.2e-46 189.5 178 52.2
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 2.9e-46 189.1 177 52.0
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 2.9e-46 189.1 178 51.1
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 2.9e-46 189.1 175 51.4
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 2.9e-46 189.1 178 51.1
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 5.0e-46 188.3 177 50.8
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 5.0e-46 188.3 176 51.1
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 6.5e-46 188.0 177 50.8
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 6.5e-46 188.0 177 50.8
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 6.5e-46 188.0 176 51.1
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 8.5e-46 187.6 177 51.4
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 8.5e-46 187.6 177 52.5
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 8.5e-46 187.6 177 50.3
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 8.5e-46 187.6 177 50.8
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 8.5e-46 187.6 175 52.0
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 1.1e-45 187.2 177 52.0
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 1.1e-45 187.2 177 50.3
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 1.1e-45 187.2 175 52.6
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 1.1e-45 187.2 178 50.6
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 1.1e-45 187.2 177 51.4
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 1.5e-45 186.8 176 51.7
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 1.5e-45 186.8 177 53.1
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 1.5e-45 186.8 177 53.1
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 1.5e-45 186.8 177 52.5
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 1.5e-45 186.8 177 52.5
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 1.5e-45 186.8 177 53.1
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 1.5e-45 186.8 177 52.5
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 1.5e-45 186.8 177 52.5
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.5e-45 186.8 178 51.1
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 1.5e-45 186.8 175 52.6
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 1.9e-45 186.4 177 53.1
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 1.9e-45 186.4 177 53.1
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 1.9e-45 186.4 178 51.1
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 2.5e-45 186.0 177 52.5
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 2.5e-45 186.0 178 51.1
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.5e-45 186.0 178 51.1
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.5e-45 186.0 178 51.1
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.5e-45 186.0 178 51.1
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 2.5e-45 186.0 175 50.3
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 2.5e-45 186.0 178 50.6
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 3.2e-45 185.7 177 52.5
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 3.2e-45 185.7 176 50.0
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 3.2e-45 185.7 176 52.3
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 3.2e-45 185.7 177 50.8
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 5.5e-45 184.9 175 51.4
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 5.5e-45 184.9 176 50.0
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 5.5e-45 184.9 176 50.0
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 7.2e-45 184.5 177 50.3
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 7.2e-45 184.5 175 52.0
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 7.2e-45 184.5 176 50.0
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 9.4e-45 184.1 177 52.5
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 9.4e-45 184.1 177 52.5
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 9.4e-45 184.1 179 49.7
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 9.4e-45 184.1 178 48.9
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 9.4e-45 184.1 177 49.7
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 1.2e-44 183.7 179 48.0
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 1.2e-44 183.7 177 50.3
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 1.2e-44 183.7 177 52.5
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 2.1e-44 183.0 177 49.7
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 2.1e-44 183.0 177 49.7
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 2.1e-44 183.0 177 48.6
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 2.1e-44 183.0 177 50.8
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 2.7e-44 182.6 175 49.7
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 2.7e-44 182.6 177 49.2
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 3.6e-44 182.2 177 49.2
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 3.6e-44 182.2 174 50.6
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 3.6e-44 182.2 175 52.0
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 3.6e-44 182.2 177 50.3
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 4.7e-44 181.8 175 49.1
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 4.7e-44 181.8 173 51.4
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 8.0e-44 181.0 189 48.1
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 8.0e-44 181.0 177 48.6
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 8.0e-44 181.0 177 48.6
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 8.0e-44 181.0 177 50.3
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 1.4e-43 180.3 177 48.0
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 1.4e-43 180.3 177 48.0
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 1.4e-43 180.3 177 48.6
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 1.4e-43 180.3 189 47.6
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 1.4e-43 180.3 177 49.2
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 1.8e-43 179.9 177 48.6
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 1.8e-43 179.9 177 48.6
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 3.0e-43 179.1 169 50.3
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 7.5e-42 174.5 182 49.5
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 9.7e-42 174.1 177 50.3
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 2.8e-41 172.6 177 49.7
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 1.1e-40 170.6 209 42.1
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 2.4e-40 169.5 147 52.4
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 7.0e-40 167.9 203 45.3
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 9.1e-40 167.5 176 46.6
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 9.1e-40 167.5 149 51.7
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 5.9e-39 164.9 168 46.4
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 7.2e-37 157.9 180 44.4
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 2.7e-36 156.0 178 43.8
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 6.3e-33 144.8 145 46.2
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 3.1e-32 142.5 126 49.2
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 5.4e-32 141.7 177 41.2
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 1.1e-29 134.0 177 44.6
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 7.0e-24 114.8 100 51.0
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.8e-19 100.1 102 48.0
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 5.7e-18 95.1 128 38.3
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 2.5e-13 79.7 123 38.2
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 2.6e-10 69.7 67 44.8
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.2e-07 60.8 60 43.3


User provided reference genes

Program Settings