Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G118 Micromonas commoda HOM05D002376 ORTHO05D004654 6.5e-230 800.4 421 100.0
Actinidia23178 Actinidia chinensis HOM05D002376 ORTHO05D004654 2.6e-37 160.6 179 50.3
CSS0048295 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 2.2e-36 157.5 160 51.2
CSS0050025 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 3.8e-36 156.8 199 45.7
MD11G1056400 Malus domestica HOM05D002376 ORTHO05D004654 6.4e-36 156.0 170 49.4
arahy.Tifrunner.gnm1.ann1.WIJ2N1 Arachis hypogaea HOM05D002376 ORTHO05D004654 8.4e-36 155.6 178 45.5
Cre07.g351500 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D004654 1.9e-35 154.5 170 45.9
Rhsim01G0242200 Rhododendron simsii HOM05D002376 ORTHO05D004654 2.4e-35 154.1 175 47.4
vmacro14632 Vaccinium macrocarpon HOM05D002376 ORTHO05D004654 3.2e-35 153.7 176 47.2
C04p59280 Brassica napus HOM05D002376 ORTHO05D004654 4.2e-35 153.3 171 49.1
BolC4t27433H Brassica oleracea HOM05D002376 ORTHO05D004654 4.2e-35 153.3 171 49.1
MD03G1055200 Malus domestica HOM05D002376 ORTHO05D004654 4.2e-35 153.3 170 48.8
Prupe.6G045800 Prunus persica HOM05D002376 ORTHO05D004654 5.4e-35 152.9 154 51.3
Lj6g0027008 Lotus japonicus HOM05D002376 ORTHO05D004654 9.3e-35 152.1 152 50.7
Dinv28716 Davidia involucrata HOM05D002376 ORTHO05D004654 1.6e-34 151.4 170 48.2
HanXRQChr01g0013301 Helianthus annuus HOM05D002376 ORTHO05D004654 2.1e-34 151.0 179 47.5
RcHm_v2.0_Chr5g0072441 Rosa chinensis HOM05D002376 ORTHO05D004654 2.1e-34 151.0 167 46.7
BcaB01g04112 Brassica carinata HOM05D002376 ORTHO05D004654 3.5e-34 150.2 152 51.3
Hma1.2p1_1637F.1_g294890 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 3.5e-34 150.2 188 44.7
GSVIVG01024586001 Vitis vinifera HOM05D002376 ORTHO05D004654 3.5e-34 150.2 172 48.8
Prupe.6G043600 Prunus persica HOM05D002376 ORTHO05D004654 4.6e-34 149.8 154 49.4
SGA_v2.0_scaffold6G03299 Striga asiatica HOM05D002376 ORTHO05D004654 4.6e-34 149.8 168 47.0
Aqoxy2G00736 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 6.0e-34 149.4 172 48.8
BcaC02g08025 Brassica carinata HOM05D002376 ORTHO05D004654 6.0e-34 149.4 180 47.2
Sc12g0000140 Simmondsia chinensis HOM05D002376 ORTHO05D004654 6.0e-34 149.4 170 49.4
Medtr3g466410 Medicago truncatula HOM05D002376 ORTHO05D004654 7.8e-34 149.1 152 50.0
TPR.G24962 Trifolium pratense HOM05D002376 ORTHO05D004654 7.8e-34 149.1 169 46.2
BcaB06g28361 Brassica carinata HOM05D002376 ORTHO05D004654 1.0e-33 148.7 152 51.3
Cpa.g.sc2.324 Carica papaya HOM05D002376 ORTHO05D004654 1.0e-33 148.7 171 48.0
FvH4_3g40230 Fragaria vesca HOM05D002376 ORTHO05D004654 1.0e-33 148.7 167 46.1
FAN11G3581 Fragaria x ananassa HOM05D002376 ORTHO05D004654 1.0e-33 148.7 167 46.1
FAN16G2868 Fragaria x ananassa HOM05D002376 ORTHO05D004654 1.0e-33 148.7 167 46.1
FAN25G0776 Fragaria x ananassa HOM05D002376 ORTHO05D004654 1.0e-33 148.7 167 46.1
BraA04t17841Z Brassica rapa HOM05D002376 ORTHO05D004654 1.3e-33 148.3 162 49.4
Cc01_g15150 Coffea canephora HOM05D002376 ORTHO05D004654 1.7e-33 147.9 183 47.5
Lsat_1_v5_gn_5_175220 Lactuca sativa HOM05D002376 ORTHO05D004654 1.7e-33 147.9 152 52.0
PGSC0003DMG400020864 Solanum tuberosum HOM05D002376 ORTHO05D004654 1.7e-33 147.9 152 50.0
A04p23110 Brassica napus HOM05D002376 ORTHO05D004654 2.3e-33 147.5 167 49.7
CANSAT54G2949 Cannabis sativa HOM05D002376 ORTHO05D004654 2.3e-33 147.5 195 44.6
FAN21G3096 Fragaria x ananassa HOM05D002376 ORTHO05D004654 2.3e-33 147.5 167 45.5
MSTRG.12701 Avicennia marina HOM05D002376 ORTHO05D004654 3.0e-33 147.1 152 51.3
Haze_24447 Corylus avellana HOM05D002376 ORTHO05D004654 3.0e-33 147.1 210 40.5
Eucgr.J01841 Eucalyptus grandis HOM05D002376 ORTHO05D004654 3.0e-33 147.1 154 49.4
Peaxi162Scf01078g00415 Petunia axillaris HOM05D002376 ORTHO05D004654 3.0e-33 147.1 198 42.9
THA.LOC104826270 Tarenaya hassleriana HOM05D002376 ORTHO05D004654 3.0e-33 147.1 170 48.2
AL4G25210 Arabidopsis lyrata HOM05D002376 ORTHO05D004654 3.9e-33 146.7 153 50.3
AT2G30350 Arabidopsis thaliana HOM05D002376 ORTHO05D004654 3.9e-33 146.7 162 48.8
PGR119G0696 Punica granatum HOM05D002376 ORTHO05D004654 5.1e-33 146.4 173 45.7
Solyc09g031790.4 Solanum lycopersicum HOM05D002376 ORTHO05D004654 5.1e-33 146.4 152 49.3
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 6.6e-33 146.0 170 48.2
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 6.6e-33 146.0 170 48.2
Ca_15029_v3 Cicer arietinum L. HOM05D002376 ORTHO05D004654 6.6e-33 146.0 152 48.7
Ciclev10001469m.g Citrus clementina HOM05D002376 ORTHO05D004654 6.6e-33 146.0 152 50.0
Lalb_Chr20g0117351 Lupinus albus HOM05D002376 ORTHO05D004654 6.6e-33 146.0 174 46.0
Phvul.006G076300 Phaseolus vulgaris HOM05D002376 ORTHO05D004654 6.6e-33 146.0 170 45.9
QL01p025227 Quercus lobata HOM05D002376 ORTHO05D004654 6.6e-33 146.0 166 47.0
Sp4g12910 Schrenkiella parvula HOM05D002376 ORTHO05D004654 6.6e-33 146.0 166 47.6
Atru.chr1.2538 Acer truncatum HOM05D002376 ORTHO05D004654 8.7e-33 145.6 170 46.5
CAN.G473.25 Capsicum annuum HOM05D002376 ORTHO05D004654 8.7e-33 145.6 157 47.8
AUR62009726 Chenopodium quinoa HOM05D002376 ORTHO05D004654 8.7e-33 145.6 170 48.2
Sopen09g014780 Solanum pennellii HOM05D002376 ORTHO05D004654 8.7e-33 145.6 152 49.3
ClCG03G000240 Citrullus lanatus HOM05D002376 ORTHO05D004654 1.1e-32 145.2 158 48.1
COL.COLO4_11190 Corchorus olitorius HOM05D002376 ORTHO05D004654 1.1e-32 145.2 158 48.1
TWI79G1034 Tripterygium wilfordii HOM05D002376 ORTHO05D004654 1.1e-32 145.2 152 49.3
Thhalv10016841m.g Eutrema salsugineum HOM05D002376 ORTHO05D004654 1.5e-32 144.8 161 49.1
Zm00001eb303730 Zea mays HOM05D002376 ORTHO05D004654 1.5e-32 144.8 181 44.8
EL10Ac7g15858 Beta vulgaris HOM05D002376 ORTHO05D004654 1.9e-32 144.4 196 40.8
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 1.9e-32 144.4 169 47.3
Glyma.18G054900 Glycine max HOM05D002376 ORTHO05D004654 1.9e-32 144.4 165 46.1
Lalb_Chr15g0085961 Lupinus albus HOM05D002376 ORTHO05D004654 1.9e-32 144.4 180 43.9
PRCOL_00000864 Prasinoderma coloniale HOM05D002376 ORTHO05D004654 1.9e-32 144.4 154 48.7
Aa31LG5G6350 Aethionema arabicum HOM05D002376 ORTHO05D004654 2.5e-32 144.1 154 50.0
BcaC01g05989 Brassica carinata HOM05D002376 ORTHO05D004654 2.5e-32 144.1 170 48.2
VMungo0540G1534 Vigna mungo HOM05D002376 ORTHO05D004654 3.3e-32 143.7 170 45.3
Migut.D00832 Erythranthe guttata HOM05D002376 ORTHO05D004654 4.3e-32 143.3 165 47.3
TAR369G0569 Trochodendron aralioides HOM05D002376 ORTHO05D004654 4.3e-32 143.3 179 44.1
TAR623G0587 Trochodendron aralioides HOM05D002376 ORTHO05D004654 4.3e-32 143.3 173 45.7
Carub.0004s1150 Capsella rubella HOM05D002376 ORTHO05D004654 5.6e-32 142.9 161 47.8
MELO3C020503.2 Cucumis melo HOM05D002376 ORTHO05D004654 5.6e-32 142.9 158 47.5
ECA248G1568 Erigeron canadensis HOM05D002376 ORTHO05D004654 5.6e-32 142.9 171 47.4
Nitab4.5_0002601g0080 Nicotiana tabacum HOM05D002376 ORTHO05D004654 5.6e-32 142.9 172 47.1
Manes.18G137600 Manihot esculenta HOM05D002376 ORTHO05D004654 7.3e-32 142.5 152 48.0
Hund05050 Selenicereus undatus HOM05D002376 ORTHO05D004654 7.3e-32 142.5 207 42.5
Gohir.1Z049629 Gossypium hirsutum HOM05D002376 ORTHO05D004654 9.6e-32 142.1 152 47.4
Gohir.D04G000035 Gossypium hirsutum HOM05D002376 ORTHO05D004654 9.6e-32 142.1 152 47.4
Gorai.012G000400 Gossypium raimondii HOM05D002376 ORTHO05D004654 9.6e-32 142.1 152 47.4
Sabra13G0125800 Salix brachista HOM05D002376 ORTHO05D004654 1.3e-31 141.7 208 38.9
Thecc.09G361600 Theobroma cacao HOM05D002376 ORTHO05D004654 1.3e-31 141.7 165 47.3
DCAR_004798 Daucus carota HOM05D002376 ORTHO05D004654 1.6e-31 141.4 174 43.7
Gohir.A13G235800 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.6e-31 141.4 152 48.0
MSTRG.21249 Avicennia marina HOM05D002376 ORTHO05D004654 2.1e-31 141.0 172 47.1
CARHR123670 Cardamine hirsuta HOM05D002376 ORTHO05D004654 2.1e-31 141.0 152 49.3
Prupe.1G106000 Prunus persica HOM05D002376 ORTHO05D004654 2.1e-31 141.0 173 45.7
Nitab4.5_0000734g0130 Nicotiana tabacum HOM05D002376 ORTHO05D004654 2.8e-31 140.6 172 46.5
Sed0022472 Sechium edule HOM05D002376 ORTHO05D004654 2.8e-31 140.6 158 47.5
CBR_g31178 Chara braunii HOM05D002376 ORTHO05D004654 4.8e-31 139.8 153 48.4
ATR0681G169 Amborella trichopoda HOM05D002376 ORTHO05D004654 6.2e-31 139.4 152 49.3
Potri.013G155900 Populus trichocarpa HOM05D002376 ORTHO05D004654 6.2e-31 139.4 152 47.4
Aqoxy2G00731 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 8.1e-31 139.0 171 46.2
Duzib168G1857 Durio zibethinus HOM05D002376 ORTHO05D004654 8.1e-31 139.0 152 47.4
Pp3c10_1920 Physcomitrium patens HOM05D002376 ORTHO05D004654 1.1e-30 138.7 158 46.2
Potri.019G127600 Populus trichocarpa HOM05D002376 ORTHO05D004654 2.4e-30 137.5 280 34.3
Actinidia11613 Actinidia chinensis HOM05D000055 ORTHO05D000057 3.1e-30 137.1 141 50.4
Psat5g150440 Pisum sativum HOM05D002376 ORTHO05D004654 3.1e-30 137.1 157 46.5
unitig_747.g21450 Utricularia gibba HOM05D002376 ORTHO05D004654 3.1e-30 137.1 152 45.4
Os07g0230500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D004654 5.3e-30 136.3 154 48.1
PSO339G0904 Papaver somniferum HOM05D002376 ORTHO05D004654 5.3e-30 136.3 170 45.3
CDE04G2750 Ceratophyllum demersum HOM05D002376 ORTHO05D004654 6.9e-30 136.0 152 46.7
Gorai.013G272400 Gossypium raimondii HOM05D002376 ORTHO05D004654 9.0e-30 135.6 152 46.7
AagrBONN_evm.TU.Sc2ySwM_369.511 Anthoceros agrestis HOM05D002376 ORTHO05D004654 2.0e-29 134.4 152 45.4
PSO384G2467 Papaver somniferum HOM05D002376 ORTHO05D004654 2.0e-29 134.4 152 47.4
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 3.4e-29 133.7 152 47.4
Nn5g26899 Nelumbo nucifera HOM05D002376 ORTHO05D004654 5.8e-29 132.9 127 53.5
Thecc.10G043800 Theobroma cacao HOM05D002376 ORTHO05D004654 1.3e-28 131.7 184 43.5
SMO364G0016 Selaginella moellendorffii HOM05D002376 ORTHO05D004654 1.7e-28 131.3 170 42.4
CBR_g20119 Chara braunii HOM05D002376 ORTHO05D004654 2.9e-28 130.6 152 46.1
arahy.Tifrunner.gnm1.ann1.D8LDTS Arachis hypogaea HOM05D002376 ORTHO05D004654 6.4e-28 129.4 231 35.1
Mapoly0004s0007 Marchantia polymorpha HOM05D002376 ORTHO05D004654 1.9e-27 127.9 167 45.5
Hma1.2p1_2270F.1_g318510 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 1.2e-26 125.2 172 42.4
Oeu011367.1 Olea europaea HOM05D002376 ORTHO05D004654 2.7e-26 124.0 115 53.9
SHI19259 Sapria himalayana HOM05D002376 ORTHO05D004654 2.7e-26 124.0 208 38.0
C04p59230 Brassica napus HOM05D002376 ORTHO05D004654 9.6e-24 115.5 131 48.9
CsaV3_1G036670 Cucumis sativus L. HOM05D002376 ORTHO05D004654 3.7e-23 113.6 133 45.9
Gohir.A08G000016 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.1e-22 110.5 113 49.6
Gohir.D13G241450 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.9e-20 104.0 75 61.3
Gohir.1Z049465 Gossypium hirsutum HOM05D002376 ORTHO05D004654 8.4e-20 102.4 127 43.3
CiPaw.14G052200 Carya illinoinensis HOM05D002376 ORTHO05D004654 3.9e-17 93.6 76 57.9
Gohir.1Z049334 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.9e-16 91.3 152 36.2
Prupe.1G103400 Prunus persica HOM05D002376 ORTHO05D004654 4.3e-16 90.1 69 60.9
AUR62036221 Chenopodium quinoa HOM05D002376 ORTHO05D004654 3.7e-15 87.0 136 41.2
Cfa023829 Carpinus fangiana HOM05D002376 ORTHO05D004654 5.3e-14 83.2 138 39.9
A03p02950 Brassica napus HOM05D002376 ORTHO05D004654 2.6e-13 80.9 101 47.5
BcaC02g08029 Brassica carinata HOM05D002376 ORTHO05D004654 4.5e-13 80.1 95 48.4
Cfa011807 Carpinus fangiana HOM05D002376 ORTHO05D004654 2.2e-12 77.8 144 34.7
Glyma.11G161200 Glycine max HOM05D002376 ORTHO05D004654 4.9e-12 76.6 121 38.0
Prupe.1G108400 Prunus persica HOM05D002376 ORTHO05D004654 4.2e-11 73.6 154 33.8
Eucgr.C01059 Eucalyptus grandis HOM05D002376 ORTHO05D004654 1.6e-10 71.6 55 61.8
Nn5g26910 Nelumbo nucifera HOM05D002376 ORTHO05D004654 3.9e-09 67.0 130 36.9
SEGI_20425 Sequoiadendron giganteum HOM05D000916 ORTHO05D009274 3.9e-09 67.0 97 38.1
Mapoly0059s0058 Marchantia polymorpha HOM05D000916 ORTHO05D009274 5.1e-09 66.6 89 39.3
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 9.7e-08 62.4 86 40.7
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 9.7e-08 62.4 86 40.7
Gorai.005G269000 Gossypium raimondii HOM05D002376 ORTHO05D004654 2.8e-07 60.8 87 39.1
SEGI_39190 Sequoiadendron giganteum HOM05D002376 ORTHO05D004654 2.8e-07 60.8 108 36.1
EL10Ac2g04385 Beta vulgaris HOM05D000916 ORTHO05D009274 3.7e-07 60.5 107 35.5
MSTRG.5047 Avicennia marina HOM05D000916 ORTHO05D009274 6.3e-07 59.7 77 42.9
Lsat_1_v5_gn_7_34400 Lactuca sativa HOM05D000916 ORTHO05D009274 1.1e-06 58.9 69 43.5
CsaV3_3G031830 Cucumis sativus L. HOM05D000916 ORTHO05D009274 1.4e-06 58.5 79 36.7
HanXRQChr15g0480451 Helianthus annuus HOM05D000916 ORTHO05D009274 1.4e-06 58.5 69 44.9
AagrBONN_evm.TU.Sc2ySwM_117.2289 Anthoceros agrestis HOM05D000916 ORTHO05D009274 1.8e-06 58.2 71 45.1
CDE11G0804 Ceratophyllum demersum HOM05D000916 ORTHO05D009274 1.8e-06 58.2 69 42.0
Oeu049471.1 Olea europaea HOM05D000916 ORTHO05D009274 2.4e-06 57.8 89 40.4
Gohir.D08G065100 Gossypium hirsutum HOM05D000916 ORTHO05D009274 3.1e-06 57.4 94 37.2
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 4.1e-06 57.0 109 36.7
AUR62023107 Chenopodium quinoa HOM05D000916 ORTHO05D009274 4.1e-06 57.0 140 30.7
PRCOL_00003986 Prasinoderma coloniale HOM05D000916 ORTHO05D009274 4.1e-06 57.0 89 43.8
ATR0782G182 Amborella trichopoda HOM05D000916 ORTHO05D009274 5.3e-06 56.6 69 42.0
Cc04_g14680 Coffea canephora HOM05D000916 ORTHO05D009274 5.3e-06 56.6 120 32.5
MBI11_g21817_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D009274 5.3e-06 56.6 105 34.3
ClCG10G012070 Citrullus lanatus HOM05D000916 ORTHO05D009274 6.9e-06 56.2 58 41.4
Gorai.004G067400 Gossypium raimondii HOM05D000916 ORTHO05D009274 6.9e-06 56.2 94 36.2
Zm00001eb405020 Zea mays HOM05D000916 ORTHO05D009274 6.9e-06 56.2 69 42.0
BolC9t57873H Brassica oleracea HOM05D002376 ORTHO05D004654 9.0e-06 55.8 109 35.8
MELO3C024009.2 Cucumis melo HOM05D000916 ORTHO05D009274 9.0e-06 55.8 85 35.3
Migut.N01806 Erythranthe guttata HOM05D000916 ORTHO05D009274 9.0e-06 55.8 94 35.1
Nitab4.5_0002888g0050 Nicotiana tabacum HOM05D000916 ORTHO05D009274 9.0e-06 55.8 101 35.6
TWI53G0499 Tripterygium wilfordii HOM05D000916 ORTHO05D009274 9.0e-06 55.8 107 35.5


User provided reference genes

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