Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G111 Micromonas commoda HOM05D004390 ORTHO05D004950 1.2e-52 209.5 102 100.0
Actinidia08077 Actinidia chinensis HOM05D001171 ORTHO05D001872 1.2e-15 86.7 93 45.2
Nn4g22350 Nelumbo nucifera HOM05D004390 ORTHO05D004950 1.5e-15 86.3 74 47.3
FvH4_4g23930 Fragaria vesca HOM05D004390 ORTHO05D004950 2.0e-15 85.9 92 41.3
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 2.0e-15 85.9 92 41.3
Nn3g16498 Nelumbo nucifera HOM05D004390 ORTHO05D004950 2.0e-15 85.9 76 50.0
FAN07G0791 Fragaria x ananassa HOM05D004390 ORTHO05D004950 2.6e-15 85.5 92 41.3
FAN17G1207 Fragaria x ananassa HOM05D004390 ORTHO05D004950 2.6e-15 85.5 92 41.3
FAN22G0688 Fragaria x ananassa HOM05D004390 ORTHO05D004950 2.6e-15 85.5 92 41.3
HanXRQChr08g0207731 Helianthus annuus HOM05D004390 ORTHO05D004950 2.6e-15 85.5 84 42.9
Manes.12G012800 Manihot esculenta HOM05D004390 ORTHO05D004950 2.6e-15 85.5 91 41.8
Pp3c4_12150 Physcomitrium patens HOM05D004390 ORTHO05D004950 3.4e-15 85.1 96 42.7
Cpa.g.sc34.218 Carica papaya HOM05D004390 ORTHO05D004950 4.4e-15 84.7 87 43.7
TAR371G0820 Trochodendron aralioides HOM05D004390 ORTHO05D004950 4.4e-15 84.7 76 47.4
BcaNung00935 Brassica carinata HOM05D004390 ORTHO05D004950 5.8e-15 84.3 95 43.2
BolC1t00106H Brassica oleracea HOM05D004390 ORTHO05D004950 5.8e-15 84.3 95 43.2
Migut.E00025 Erythranthe guttata HOM05D004390 ORTHO05D004950 5.8e-15 84.3 91 44.0
DCAR_007008 Daucus carota HOM05D004390 ORTHO05D004950 1.3e-14 83.2 93 44.1
SpUn0131_0010 Schrenkiella parvula HOM05D004390 ORTHO05D004950 1.3e-14 83.2 76 48.7
Eucgr.B03484 Eucalyptus grandis HOM05D004390 ORTHO05D004950 1.7e-14 82.8 102 44.1
Thhalv10027263m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.7e-14 82.8 95 42.1
CiPaw.06G101400 Carya illinoinensis HOM05D004390 ORTHO05D004950 2.2e-14 82.4 97 41.2
Sp7g35820 Schrenkiella parvula HOM05D004390 ORTHO05D004950 2.2e-14 82.4 95 43.2
A01p00960 Brassica napus HOM05D004390 ORTHO05D004950 2.9e-14 82.0 97 43.3
BraA01t00094Z Brassica rapa HOM05D004390 ORTHO05D004950 2.9e-14 82.0 97 43.3
CSS0004094 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 2.9e-14 82.0 99 40.4
CSS0048605 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 2.9e-14 82.0 99 40.4
Carub.0007s0202 Capsella rubella HOM05D004390 ORTHO05D004950 2.9e-14 82.0 99 42.4
Duzib248G1577 Durio zibethinus HOM05D004390 ORTHO05D004950 2.9e-14 82.0 95 43.2
ECA233G0624 Erigeron canadensis HOM05D004390 ORTHO05D004950 2.9e-14 82.0 99 42.4
ECA240G0924 Erigeron canadensis HOM05D004390 ORTHO05D004950 2.9e-14 82.0 99 42.4
THA.LOC104824892 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 2.9e-14 82.0 76 47.4
THA.LOC104824896 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 2.9e-14 82.0 76 47.4
AL7G12360 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 3.7e-14 81.6 99 42.4
BcaC07g41074 Brassica carinata HOM05D004390 ORTHO05D004950 3.7e-14 81.6 87 42.5
A09p57580 Brassica napus HOM05D004390 ORTHO05D004950 3.7e-14 81.6 87 42.5
BolC8t51641H Brassica oleracea HOM05D004390 ORTHO05D004950 3.7e-14 81.6 87 42.5
BraA09t41150Z Brassica rapa HOM05D004390 ORTHO05D004950 3.7e-14 81.6 87 42.5
PSO478G0183 Papaver somniferum HOM05D004390 ORTHO05D004950 3.7e-14 81.6 71 47.9
Lsat_1_v5_gn_8_149361 Lactuca sativa HOM05D004390 ORTHO05D004950 4.9e-14 81.3 99 39.4
Potri.008G175775 Populus trichocarpa HOM05D004390 ORTHO05D004950 4.9e-14 81.3 99 43.4
Rhsim10G0039200 Rhododendron simsii HOM05D004390 ORTHO05D004950 4.9e-14 81.3 76 48.7
THA.LOC104824895 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.9e-14 81.3 95 41.1
C08p40770 Brassica napus HOM05D004390 ORTHO05D004950 6.4e-14 80.9 87 42.5
CARHR246620 Cardamine hirsuta HOM05D004390 ORTHO05D004950 6.4e-14 80.9 83 44.6
PSO017G1102 Papaver somniferum HOM05D004390 ORTHO05D004950 6.4e-14 80.9 71 46.5
THA.LOC104824898 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 6.4e-14 80.9 95 41.1
THA.LOC109116235 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 6.4e-14 80.9 76 48.7
CARHR113610 Cardamine hirsuta HOM05D004390 ORTHO05D004950 8.3e-14 80.5 84 44.0
Hund25458 Selenicereus undatus HOM05D004390 ORTHO05D004950 8.3e-14 80.5 98 39.8
Aa31LG6G15170 Aethionema arabicum HOM05D004390 ORTHO05D004950 1.1e-13 80.1 76 48.7
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 1.1e-13 80.1 76 46.1
Prupe.1G228300 Prunus persica HOM05D004390 ORTHO05D004950 1.1e-13 80.1 95 37.9
PGR102G2095 Punica granatum HOM05D004390 ORTHO05D004950 1.1e-13 80.1 100 40.0
Aqoxy5G03398 Aquilegia oxysepala HOM05D004390 ORTHO05D004950 1.4e-13 79.7 76 51.3
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 1.4e-13 79.7 86 40.7
ATR1098G064 Amborella trichopoda HOM05D004390 ORTHO05D004950 1.8e-13 79.3 99 38.4
CANSAT80G1060 Cannabis sativa HOM05D004390 ORTHO05D004950 1.8e-13 79.3 85 41.2
AUR62024125 Chenopodium quinoa HOM05D004390 ORTHO05D004950 1.8e-13 79.3 76 46.1
ClCG11G013760 Citrullus lanatus HOM05D004390 ORTHO05D004950 1.8e-13 79.3 84 45.2
Cc11_g00910 Coffea canephora HOM05D004390 ORTHO05D004950 1.8e-13 79.3 76 46.1
Migut.K00715 Erythranthe guttata HOM05D004390 ORTHO05D004950 1.8e-13 79.3 99 42.4
Sabra08G0134000 Salix brachista HOM05D004390 ORTHO05D004950 1.8e-13 79.3 99 42.4
Sed0024223 Sechium edule HOM05D004390 ORTHO05D004950 1.8e-13 79.3 67 47.8
THA.LOC104824890 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.8e-13 79.3 95 41.1
TAR622G0138 Trochodendron aralioides HOM05D004390 ORTHO05D004950 1.8e-13 79.3 76 46.1
HPP92_024163 Vanilla planifolia HOM05D000064 ORTHO05D000281 1.8e-13 79.3 71 46.5
HPP92_024177 Vanilla planifolia HOM05D004390 ORTHO05D004950 1.8e-13 79.3 71 46.5
BcaB08g35066 Brassica carinata HOM05D004390 ORTHO05D004950 2.4e-13 79.0 91 41.8
CsaV3_5G030350 Cucumis sativus L. HOM05D004390 ORTHO05D004950 2.4e-13 79.0 84 45.2
Gohir.D01G154700 Gossypium hirsutum HOM05D004390 ORTHO05D004950 2.4e-13 79.0 95 38.9
Gorai.002G191500 Gossypium raimondii HOM05D004390 ORTHO05D004950 2.4e-13 79.0 95 38.9
Phvul.001G260900 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 2.4e-13 79.0 83 44.6
AL4G11930 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 3.2e-13 78.6 91 40.7
CARHR089330 Cardamine hirsuta HOM05D004390 ORTHO05D004950 3.2e-13 78.6 92 43.5
Gohir.A01G155400 Gossypium hirsutum HOM05D004390 ORTHO05D004950 3.2e-13 78.6 102 40.2
Hma1.2p1_0065F.1_g035640 Hydrangea macrophylla HOM05D004390 ORTHO05D004950 3.2e-13 78.6 84 44.0
Medtr8g080380 Medicago truncatula HOM05D004390 ORTHO05D004950 3.2e-13 78.6 99 42.4
Medtr3g085510 Medicago truncatula HOM05D004390 ORTHO05D004950 4.1e-13 78.2 84 42.9
Psat5g095200 Pisum sativum HOM05D004390 ORTHO05D004950 4.1e-13 78.2 83 44.6
AT2G22425 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 5.4e-13 77.8 91 39.6
Gohir.A12G148600 Gossypium hirsutum HOM05D004390 ORTHO05D004950 5.4e-13 77.8 95 38.9
Gorai.008G164900 Gossypium raimondii HOM05D004390 ORTHO05D004950 5.4e-13 77.8 95 38.9
Oeu058917.1 Olea europaea HOM05D004390 ORTHO05D004950 5.4e-13 77.8 99 44.4
PRCOL_00005433 Prasinoderma coloniale HOM05D004390 ORTHO05D004950 5.4e-13 77.8 71 45.1
TWI18G1082 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 5.4e-13 77.8 95 37.9
Zm00001eb218300 Zea mays HOM05D004390 ORTHO05D004950 5.4e-13 77.8 101 40.6
Aa31LG7G14400 Aethionema arabicum HOM05D004390 ORTHO05D004950 7.0e-13 77.4 95 37.9
Ah.02g130970 Amaranthus hybridus HOM05D004390 ORTHO05D004950 7.0e-13 77.4 102 39.2
Haze_10374 Corylus avellana HOM05D004390 ORTHO05D004950 7.0e-13 77.4 95 38.9
Dinv14827 Davidia involucrata HOM05D001171 ORTHO05D001872 7.0e-13 77.4 99 42.4
Thhalv10021836m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 7.0e-13 77.4 85 44.7
Sc11g0000500 Simmondsia chinensis HOM05D004390 ORTHO05D004950 7.0e-13 77.4 98 39.8
GSVIVG01010448001 Vitis vinifera HOM05D004390 ORTHO05D004950 7.0e-13 77.4 91 41.8
Aa31LG7G15420 Aethionema arabicum HOM05D004390 ORTHO05D004950 9.2e-13 77.0 95 37.9
arahy.Tifrunner.gnm1.ann1.L53BL2 Arachis hypogaea HOM05D004390 ORTHO05D004950 9.2e-13 77.0 91 39.6
CSS0024228 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 9.2e-13 77.0 71 43.7
Carub.0004s0159 Capsella rubella HOM05D004390 ORTHO05D004950 9.2e-13 77.0 84 41.7
Ca_18042_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 9.2e-13 77.0 83 43.4
MELO3C011874.2 Cucumis melo HOM05D004390 ORTHO05D004950 9.2e-13 77.0 100 42.0
Atru.chr11.2308 Acer truncatum HOM05D004390 ORTHO05D004950 1.2e-12 76.6 95 37.9
Actinidia09657 Actinidia chinensis HOM05D004390 ORTHO05D004950 1.2e-12 76.6 100 40.0
EL10Ac6g13484 Beta vulgaris HOM05D004390 ORTHO05D004950 1.2e-12 76.6 102 39.2
Cfa009329 Carpinus fangiana HOM05D004390 ORTHO05D004950 1.2e-12 76.6 97 38.1
Lj7E465T0 Lonicera japonica HOM05D004390 ORTHO05D004950 1.2e-12 76.6 93 39.8
MBI05_g44034_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.2e-12 76.6 86 41.9
Rhsim12G0027700 Rhododendron simsii HOM05D004390 ORTHO05D004950 1.2e-12 76.6 93 44.1
TPR.G28271 Trifolium pratense HOM05D004390 ORTHO05D004950 1.2e-12 76.6 91 41.8
Glyma.18G007600 Glycine max HOM05D004390 ORTHO05D004950 1.6e-12 76.3 91 40.7
MBI11_g07456_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.6e-12 76.3 98 40.8
TWI36G1003 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 1.6e-12 76.3 95 37.9
Actinidia20702 Actinidia chinensis HOM05D004390 ORTHO05D004950 2.0e-12 75.9 99 40.4
Mapoly0041s0086 Marchantia polymorpha HOM05D004390 ORTHO05D004950 2.0e-12 75.9 93 39.8
PSO063G2970 Papaver somniferum HOM05D004390 ORTHO05D004950 2.0e-12 75.9 84 36.9
Pp3c10_14440 Physcomitrium patens HOM05D004390 ORTHO05D004950 2.0e-12 75.9 99 37.4
Zm00001eb052740 Zea mays HOM05D004390 ORTHO05D004950 2.0e-12 75.9 100 38.0
AT4G40042 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 2.7e-12 75.5 84 40.5
Gohir.D12G152500 Gossypium hirsutum HOM05D004390 ORTHO05D004950 2.7e-12 75.5 95 37.9
Os12g0438900 Oryza sativa ssp. japonica HOM05D004390 ORTHO05D004950 2.7e-12 75.5 100 37.0
PSO782G4737 Papaver somniferum HOM05D004390 ORTHO05D004950 2.7e-12 75.5 79 40.5
Sopen03g001750 Solanum pennellii HOM05D004390 ORTHO05D004950 2.7e-12 75.5 99 39.4
Duzib251G0716 Durio zibethinus HOM05D004390 ORTHO05D004950 3.5e-12 75.1 95 40.0
Nitab4.5_0000592g0450 Nicotiana tabacum HOM05D004390 ORTHO05D004950 3.5e-12 75.1 76 44.7
Thecc.02G210700 Theobroma cacao HOM05D004390 ORTHO05D004950 3.5e-12 75.1 95 38.9
ATR0561G166 Amborella trichopoda HOM05D004390 ORTHO05D004950 4.6e-12 74.7 82 39.0
Thhalv10000378m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 4.6e-12 74.7 99 40.4
Lsat_1_v5_gn_3_29821 Lactuca sativa HOM05D004390 ORTHO05D004950 4.6e-12 74.7 76 39.5
QL03p053718 Quercus lobata HOM05D004390 ORTHO05D004950 4.6e-12 74.7 99 39.4
TWI75G0215 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 4.6e-12 74.7 95 36.8
CAN.G638.34 Capsicum annuum HOM05D004390 ORTHO05D004950 6.0e-12 74.3 99 37.4
COL.COLO4_20382 Corchorus olitorius HOM05D001171 ORTHO05D001872 6.0e-12 74.3 93 39.8
Glyma.05G146700 Glycine max HOM05D004390 ORTHO05D004950 6.0e-12 74.3 76 46.1
SEGI_16803 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 6.0e-12 74.3 100 36.0
Carub.0003s1416 Capsella rubella HOM05D004390 ORTHO05D004950 7.8e-12 73.9 93 39.8
Glyma.08G103600 Glycine max HOM05D004390 ORTHO05D004950 7.8e-12 73.9 83 43.4
Glyma.11G249600 Glycine max HOM05D004390 ORTHO05D004950 7.8e-12 73.9 99 40.4
CBR_g48133 Chara braunii HOM05D004390 ORTHO05D004950 1.0e-11 73.6 99 39.4
Nitab4.5_0000367g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.0e-11 73.6 84 38.1
Nitab4.5_0000379g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.0e-11 73.6 84 38.1
Peaxi162Scf00128g01124 Petunia axillaris HOM05D004390 ORTHO05D004950 1.0e-11 73.6 76 43.4
Psat4g014960 Pisum sativum HOM05D004390 ORTHO05D004950 1.3e-11 73.2 99 41.4
QL12p006243 Quercus lobata HOM05D004390 ORTHO05D004950 1.3e-11 73.2 101 39.6
Lj4g0026719 Lotus japonicus HOM05D004390 ORTHO05D004950 1.7e-11 72.8 99 39.4
arahy.Tifrunner.gnm1.ann1.FA6GLZ Arachis hypogaea HOM05D004390 ORTHO05D004950 2.3e-11 72.4 91 37.4
Phvul.002G174400 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 2.3e-11 72.4 83 39.8
SMO364G0480 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 3.0e-11 72.0 100 42.0
Duzib268G0993 Durio zibethinus HOM05D004390 ORTHO05D004950 3.9e-11 71.6 84 38.1
TAR629G1658 Trochodendron aralioides HOM05D004390 ORTHO05D004950 3.9e-11 71.6 103 39.8
Potri.010G059300 Populus trichocarpa HOM05D004390 ORTHO05D004950 8.6e-11 70.5 99 39.4
RcHm_v2.0_Chr4g0430591 Rosa chinensis HOM05D004390 ORTHO05D004950 8.6e-11 70.5 80 40.0
arahy.Tifrunner.gnm1.ann1.CM82MG Arachis hypogaea HOM05D004390 ORTHO05D004950 1.1e-10 70.1 91 36.3
Ca_16468_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 1.1e-10 70.1 100 40.0
ClCG09G006830 Citrullus lanatus HOM05D004390 ORTHO05D004950 1.1e-10 70.1 69 40.6
Nitab4.5_0002210g0100 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.1e-10 70.1 99 36.4
MBI13_g26147_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 4.3e-10 68.2 87 35.6
TPR.G10940 Trifolium pratense HOM05D004390 ORTHO05D004950 9.5e-10 67.0 65 43.1
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 8.0e-09 63.9 96 36.5
CiPaw.05G111600 Carya illinoinensis HOM05D004390 ORTHO05D004950 8.0e-09 63.9 81 42.0
Lalb_Chr07g0187411 Lupinus albus HOM05D004390 ORTHO05D004950 1.4e-08 63.2 63 42.9
MD13G1117200 Malus domestica HOM05D004390 ORTHO05D004950 3.1e-08 62.0 63 39.7
Sp3g12740 Schrenkiella parvula HOM05D004390 ORTHO05D004950 4.0e-08 61.6 61 42.6
Manes.13G018500 Manihot esculenta HOM05D004390 ORTHO05D004950 5.2e-08 61.2 67 43.3
SMO145G0172 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 1.2e-07 60.1 67 38.8
Solyc03g005740.3 Solanum lycopersicum HOM05D004390 ORTHO05D004950 2.0e-07 59.3 86 37.2
MBI07_g16243_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D004950 7.5e-07 57.4 60 41.7
Nn4g24822 Nelumbo nucifera HOM05D002155 ORTHO05D004950 7.5e-07 57.4 96 35.4
Pp3c3_460 Physcomitrium patens HOM05D004390 ORTHO05D004950 1.7e-06 56.2 66 36.4
Nn1g04852 Nelumbo nucifera HOM05D004390 ORTHO05D004950 2.9e-06 55.5 51 45.1
MBI07_g34630_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 3.7e-06 55.1 70 41.4
Lalb_Chr12g0206281 Lupinus albus HOM05D004390 ORTHO05D004950 6.4e-06 54.3 63 39.7


User provided reference genes

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