Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 5.0e-88 327.8 170 100.0
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 9.2e-34 147.5 160 49.4
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 1.6e-33 146.7 174 48.9
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 7.8e-33 144.4 160 52.5
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.0e-32 144.1 167 47.3
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 4.3e-31 138.7 117 59.8
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 7.3e-31 137.9 168 45.8
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 1.6e-30 136.7 134 52.2
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 1.5e-28 130.2 115 56.5
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 7.6e-28 127.9 117 53.8
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 7.6e-28 127.9 115 54.8
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 9.9e-28 127.5 117 57.3
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 1.3e-27 127.1 157 46.5
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 2.9e-27 125.9 117 54.7
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 6.4e-27 124.8 117 53.0
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 6.4e-27 124.8 117 53.0
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 6.4e-27 124.8 117 53.0
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 8.4e-27 124.4 117 53.0
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 8.4e-27 124.4 165 47.9
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 8.4e-27 124.4 117 53.0
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 1.1e-26 124.0 117 53.8
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 1.9e-26 123.2 154 45.5
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 1.9e-26 123.2 139 49.6
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 2.4e-26 122.9 117 52.1
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 2.4e-26 122.9 117 52.1
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 4.1e-26 122.1 116 52.6
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 7.1e-26 121.3 116 52.6
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 9.2e-26 120.9 116 51.7
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 9.2e-26 120.9 117 51.3
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 9.2e-26 120.9 160 43.8
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 1.2e-25 120.6 161 43.5
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 1.2e-25 120.6 166 42.8
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 1.2e-25 120.6 176 42.0
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 1.6e-25 120.2 117 51.3
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 1.6e-25 120.2 117 51.3
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 1.6e-25 120.2 117 51.3
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 1.6e-25 120.2 117 51.3
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 1.6e-25 120.2 117 51.3
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 1.6e-25 120.2 117 51.3
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 1.6e-25 120.2 117 51.3
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 1.6e-25 120.2 154 46.8
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 1.6e-25 120.2 176 44.3
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 2.1e-25 119.8 161 46.0
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 2.1e-25 119.8 117 51.3
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 2.1e-25 119.8 117 51.3
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 2.1e-25 119.8 117 51.3
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 2.7e-25 119.4 116 50.9
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 2.7e-25 119.4 183 42.6
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 3.5e-25 119.0 155 43.9
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 3.5e-25 119.0 165 46.1
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 3.5e-25 119.0 164 42.1
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 4.6e-25 118.6 166 47.0
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 4.6e-25 118.6 117 51.3
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 4.6e-25 118.6 176 42.6
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 4.6e-25 118.6 176 42.6
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 4.6e-25 118.6 117 50.4
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 6.0e-25 118.2 117 50.4
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 6.0e-25 118.2 117 50.4
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 6.0e-25 118.2 115 50.4
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 6.0e-25 118.2 157 43.3
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 6.0e-25 118.2 163 46.0
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 7.8e-25 117.9 163 44.8
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 7.8e-25 117.9 183 43.2
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 7.8e-25 117.9 166 43.4
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 7.8e-25 117.9 117 49.6
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 7.8e-25 117.9 160 45.0
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 7.8e-25 117.9 168 43.5
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 1.0e-24 117.5 116 51.7
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 1.0e-24 117.5 116 52.6
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 1.3e-24 117.1 161 45.3
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.7e-24 116.7 151 43.0
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 1.7e-24 116.7 117 49.6
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 2.3e-24 116.3 116 50.0
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 2.3e-24 116.3 170 42.4
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 2.3e-24 116.3 153 44.4
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 3.0e-24 115.9 113 50.4
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 3.0e-24 115.9 158 44.9
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 3.0e-24 115.9 162 42.6
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 3.0e-24 115.9 174 42.5
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 3.9e-24 115.5 173 41.6
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 3.9e-24 115.5 152 46.1
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 3.9e-24 115.5 161 44.1
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 3.9e-24 115.5 155 45.8
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 3.9e-24 115.5 163 41.7
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 5.1e-24 115.2 161 44.1
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 5.1e-24 115.2 149 45.0
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 6.6e-24 114.8 181 40.3
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 6.6e-24 114.8 181 39.2
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 6.6e-24 114.8 164 44.5
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 6.6e-24 114.8 179 43.6
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 8.6e-24 114.4 160 43.1
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 8.6e-24 114.4 162 42.6
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 8.6e-24 114.4 159 44.7
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 1.1e-23 114.0 178 42.1
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.1e-23 114.0 173 41.6
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.1e-23 114.0 162 42.0
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.1e-23 114.0 183 42.6
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 1.1e-23 114.0 162 43.8
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 1.1e-23 114.0 179 43.0
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 1.1e-23 114.0 149 43.6
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 1.1e-23 114.0 110 50.9
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 1.1e-23 114.0 110 50.9
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 1.5e-23 113.6 173 41.6
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 1.5e-23 113.6 108 51.9
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 1.9e-23 113.2 115 50.4
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 2.5e-23 112.8 181 39.8
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.5e-23 112.8 162 40.1
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 2.5e-23 112.8 150 45.3
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 3.3e-23 112.5 117 50.4
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 3.3e-23 112.5 117 50.4
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 3.3e-23 112.5 175 44.6
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 4.3e-23 112.1 174 42.0
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 4.3e-23 112.1 163 40.5
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 4.3e-23 112.1 162 42.0
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 5.6e-23 111.7 167 40.7
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 5.6e-23 111.7 173 42.8
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 5.6e-23 111.7 180 41.7
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 5.6e-23 111.7 171 41.5
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 5.6e-23 111.7 176 41.5
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 5.6e-23 111.7 175 44.6
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 7.3e-23 111.3 100 55.0
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 7.3e-23 111.3 166 42.2
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 7.3e-23 111.3 175 44.6
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 9.6e-23 110.9 101 53.5
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 9.6e-23 110.9 173 41.6
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 9.6e-23 110.9 175 43.4
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 1.2e-22 110.5 150 43.3
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 1.6e-22 110.2 101 54.5
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 1.6e-22 110.2 150 44.0
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 1.6e-22 110.2 98 53.1
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 2.1e-22 109.8 171 40.9
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 2.8e-22 109.4 164 42.1
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 2.8e-22 109.4 150 42.7
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 3.6e-22 109.0 172 41.9
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 3.6e-22 109.0 172 41.9
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 3.6e-22 109.0 169 41.4
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 3.6e-22 109.0 157 41.4
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 4.7e-22 108.6 140 43.6
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 4.7e-22 108.6 117 47.9
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 4.7e-22 108.6 173 40.5
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 6.2e-22 108.2 167 43.1
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 8.1e-22 107.8 170 42.4
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 2.4e-21 106.3 157 39.5
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 3.1e-21 105.9 172 40.7
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 3.1e-21 105.9 172 40.1
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 5.2e-21 105.1 178 41.0
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 5.2e-21 105.1 161 42.2
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 1.2e-20 104.0 159 45.3
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 2.0e-20 103.2 185 41.1
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 3.4e-20 102.4 175 43.4
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 5.8e-20 101.7 176 40.9
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 1.7e-19 100.1 163 39.9
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 2.9e-19 99.4 171 41.5
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 2.4e-18 96.3 165 42.4
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 5.1e-16 88.6 161 39.8
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 8.7e-16 87.8 129 45.0
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 9.6e-15 84.3 71 54.9
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 2.8e-14 82.8 85 51.8
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 8.1e-14 81.3 71 53.5
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 1.1e-13 80.9 216 31.5
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 6.4e-11 71.6 67 53.7
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.5e-07 60.5 68 47.1


User provided reference genes

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