Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 8.4e-312 1073.2 614 100.0
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 2.6e-22 111.3 520 26.2
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 1.7e-21 108.6 522 25.9
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 2.9e-21 107.8 573 24.8
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 5.0e-21 107.1 520 25.8
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 6.5e-21 106.7 564 26.1
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 8.5e-21 106.3 446 27.6
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 8.5e-21 106.3 524 27.5
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 1.1e-20 105.9 551 25.2
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 1.5e-20 105.5 545 26.2
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 2.5e-20 104.8 520 26.5
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 2.5e-20 104.8 521 28.6
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 3.2e-20 104.4 569 25.3
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 4.2e-20 104.0 520 26.3
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 4.2e-20 104.0 447 28.2
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 4.2e-20 104.0 510 25.7
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 5.5e-20 103.6 524 27.7
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 5.5e-20 103.6 461 28.2
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 7.2e-20 103.2 562 25.3
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 7.2e-20 103.2 561 25.7
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 9.4e-20 102.8 520 27.1
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 9.4e-20 102.8 521 26.9
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 1.6e-19 102.1 528 26.5
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 1.6e-19 102.1 453 27.4
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 2.1e-19 101.7 454 26.7
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 2.1e-19 101.7 561 26.2
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 2.7e-19 101.3 451 28.2
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 2.7e-19 101.3 449 27.4
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 3.6e-19 100.9 561 25.5
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 4.7e-19 100.5 447 28.2
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 4.7e-19 100.5 446 25.8
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 4.7e-19 100.5 520 25.6
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 6.1e-19 100.1 446 26.0
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 8.0e-19 99.8 547 23.9
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 8.0e-19 99.8 563 25.9
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 1.0e-18 99.4 523 27.9
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 1.4e-18 99.0 536 26.9
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 1.4e-18 99.0 520 27.1
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.4e-18 99.0 446 26.0
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 1.4e-18 99.0 558 24.6
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 2.3e-18 98.2 446 25.6
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.3e-18 98.2 446 25.8
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.3e-18 98.2 446 25.6
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.3e-18 98.2 446 25.6
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 2.3e-18 98.2 579 26.6
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 2.3e-18 98.2 569 26.5
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 3.0e-18 97.8 555 26.5
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 4.0e-18 97.4 520 25.8
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 4.0e-18 97.4 446 25.1
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 5.2e-18 97.1 561 26.2
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 6.7e-18 96.7 447 26.0
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 6.7e-18 96.7 521 27.6
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 6.7e-18 96.7 562 26.5
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 8.8e-18 96.3 519 25.6
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 8.8e-18 96.3 520 25.8
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 1.1e-17 95.9 544 26.1
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 1.1e-17 95.9 445 27.4
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 1.5e-17 95.5 568 26.2
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 2.0e-17 95.1 446 26.9
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 2.0e-17 95.1 450 26.2
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 3.3e-17 94.4 567 24.2
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 3.3e-17 94.4 510 25.5
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 3.3e-17 94.4 450 24.9
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 4.4e-17 94.0 520 27.7
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 5.7e-17 93.6 446 26.2
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 1.3e-16 92.4 568 25.4
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.7e-16 92.0 443 24.6
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 2.2e-16 91.7 521 27.8
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 2.8e-16 91.3 520 24.4
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 4.8e-16 90.5 521 25.5
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 6.3e-16 90.1 447 28.6
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 8.2e-16 89.7 478 25.3
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 3.1e-15 87.8 520 25.8
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 3.1e-15 87.8 520 24.2
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 4.1e-15 87.4 499 24.2
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 4.1e-15 87.4 520 24.0
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 7.0e-15 86.7 509 24.2
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 7.0e-15 86.7 561 24.6
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 7.0e-15 86.7 229 33.2
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.2e-14 85.9 520 26.3
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.2e-14 85.9 520 26.2
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.6e-14 85.5 510 24.5
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 2.0e-14 85.1 513 25.7
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 2.7e-14 84.7 465 25.6
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 3.5e-14 84.3 510 25.1
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 3.5e-14 84.3 443 24.6
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 4.5e-14 84.0 549 25.3
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 4.5e-14 84.0 446 25.3
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 5.9e-14 83.6 127 40.9
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 5.9e-14 83.6 447 29.1
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 7.7e-14 83.2 489 26.0
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.3e-13 82.4 520 26.2
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 1.3e-13 82.4 520 24.0
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 2.2e-13 81.6 509 24.6
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.2e-13 81.6 525 27.2
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 2.2e-13 81.6 483 26.3
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 2.9e-13 81.3 446 26.7
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 2.9e-13 81.3 497 25.4
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 3.8e-13 80.9 440 24.8
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 6.5e-13 80.1 483 28.0
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 6.5e-13 80.1 478 28.0
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.9e-12 78.6 133 39.8
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 1.9e-12 78.6 447 26.0
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 5.5e-12 77.0 521 28.0
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 7.2e-12 76.6 446 23.1
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 7.2e-12 76.6 446 23.1
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 1.2e-11 75.9 545 25.7
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.1e-11 75.1 520 24.6
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 3.6e-11 74.3 511 25.8
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.6e-11 74.3 133 37.6
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 6.1e-11 73.6 59 59.3
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 8.0e-11 73.2 440 23.6
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.0e-10 72.8 559 24.3
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 1.4e-10 72.4 63 58.7
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 2.3e-10 71.6 437 24.7
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 2.3e-10 71.6 420 29.5
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 4.0e-10 70.9 59 61.0
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 4.0e-10 70.9 48 64.6
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 5.2e-10 70.5 439 23.9
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 5.2e-10 70.5 136 36.0
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 1.5e-09 68.9 44 70.5
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 2.0e-09 68.6 132 36.4
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 2.0e-09 68.6 59 57.6
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 3.4e-09 67.8 117 35.0
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 3.4e-09 67.8 449 25.6
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 3.4e-09 67.8 449 25.6
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 5.7e-09 67.0 520 25.0
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 5.7e-09 67.0 202 30.2
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 5.7e-09 67.0 514 21.8
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 7.5e-09 66.6 44 68.2
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 9.8e-09 66.2 55 61.8
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 2.2e-08 65.1 439 27.1
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 2.2e-08 65.1 75 50.7
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 2.2e-08 65.1 75 50.7
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 8.3e-08 63.2 55 60.0
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.1e-07 62.8 74 50.0
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.1e-07 62.8 74 50.0
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 1.8e-07 62.0 422 26.1


User provided reference genes

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