Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO15G351 Micromonas commoda HOM05D001891 ORTHO05D005832 3.3e-204 714.9 386 100.0
MCO05G707 Micromonas commoda HOM05D001891 ORTHO05D024999 7.0e-13 79.3 95 43.2
arahy.Tifrunner.gnm1.ann1.IG5XIH Arachis hypogaea HOM05D001891 ORTHO05D005832 3.8e-11 73.6 312 27.6
Psat5g265280 Pisum sativum HOM05D001891 ORTHO05D005832 3.8e-11 73.6 343 27.4
Rhsim06G0158100 Rhododendron simsii HOM05D001891 ORTHO05D005832 1.1e-10 72.0 81 49.4
Lj8A122T61 Lonicera japonica HOM05D001891 ORTHO05D005832 2.5e-10 70.9 81 48.1
PRCOL_00001357 Prasinoderma coloniale HOM05D001891 ORTHO05D005832 2.5e-10 70.9 80 45.0
CSS0020073 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D005832 3.3e-10 70.5 81 48.1
DCAR_012956 Daucus carota HOM05D001891 ORTHO05D005832 3.3e-10 70.5 82 46.3
Dinv39687 Davidia involucrata HOM05D001891 ORTHO05D005832 3.3e-10 70.5 81 48.1
Solyc07g052570.4 Solanum lycopersicum HOM05D001891 ORTHO05D005832 3.3e-10 70.5 81 46.9
Sopen07g026180 Solanum pennellii HOM05D001891 ORTHO05D005832 3.3e-10 70.5 81 46.9
vmacro12227 Vaccinium macrocarpon HOM05D001891 ORTHO05D005832 4.2e-10 70.1 82 47.6
THA.LOC104821752 Tarenaya hassleriana HOM05D001891 ORTHO05D005832 5.5e-10 69.7 80 47.5
arahy.Tifrunner.gnm1.ann1.XAPR04 Arachis hypogaea HOM05D001891 ORTHO05D005832 7.2e-10 69.3 317 28.1
FAN02G0497 Fragaria x ananassa HOM05D001891 ORTHO05D005832 7.2e-10 69.3 81 48.1
FAN09G1075 Fragaria x ananassa HOM05D001891 ORTHO05D005832 7.2e-10 69.3 81 48.1
MBI18_g23508_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 7.2e-10 69.3 81 48.1
PRCOL_00006858 Prasinoderma coloniale HOM05D004492 ORTHO05D005602 7.2e-10 69.3 84 44.0
SGA_v2.0_scaffold70G23419 Striga asiatica HOM05D001891 ORTHO05D005832 7.2e-10 69.3 81 48.1
Thecc.02G162300 Theobroma cacao HOM05D001891 ORTHO05D005832 7.2e-10 69.3 81 49.4
FvH4_6g43540 Fragaria vesca HOM05D001891 ORTHO05D005832 9.5e-10 68.9 81 48.1
FAN05G1073 Fragaria x ananassa HOM05D001891 ORTHO05D005832 9.5e-10 68.9 81 48.1
FAN14G5299 Fragaria x ananassa HOM05D001891 ORTHO05D005832 9.5e-10 68.9 81 48.1
Nitab4.5_0001176g0150 Nicotiana tabacum HOM05D001891 ORTHO05D005832 9.5e-10 68.9 315 28.3
Actinidia12502 Actinidia chinensis HOM05D001891 ORTHO05D005832 1.2e-09 68.6 82 46.3
Cc05_g05050 Coffea canephora HOM05D001891 ORTHO05D005832 1.2e-09 68.6 80 46.2
Medtr2g088820 Medicago truncatula HOM05D001891 ORTHO05D005832 1.2e-09 68.6 316 27.5
RcHm_v2.0_Chr2g0160071 Rosa chinensis HOM05D001891 ORTHO05D005832 1.2e-09 68.6 81 48.1
Eucgr.K00822 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.6e-09 68.2 81 46.9
PSO541G2722 Papaver somniferum HOM05D001891 ORTHO05D005832 1.6e-09 68.2 81 48.1
VMungo1080G1248 Vigna mungo HOM05D001891 ORTHO05D005832 1.6e-09 68.2 357 26.3
Cfa014439 Carpinus fangiana HOM05D001891 ORTHO05D005832 2.1e-09 67.8 81 45.7
unitig_26.g9659 Utricularia gibba HOM05D001891 ORTHO05D005832 2.1e-09 67.8 85 44.7
MD09G1105100 Malus domestica HOM05D001891 ORTHO05D005832 2.8e-09 67.4 81 45.7
TAR624G1196 Trochodendron aralioides HOM05D001891 ORTHO05D005832 2.8e-09 67.4 81 46.9
Zm00001eb069580 Zea mays HOM05D001891 ORTHO05D005832 2.8e-09 67.4 85 44.7
Duzib052G0092 Durio zibethinus HOM05D001891 ORTHO05D005832 3.6e-09 67.0 81 48.1
Eucgr.K00818 Eucalyptus grandis HOM05D001891 ORTHO05D005832 3.6e-09 67.0 81 46.9
Eucgr.K00821 Eucalyptus grandis HOM05D001891 ORTHO05D005832 3.6e-09 67.0 81 46.9
Glyma.12G195700 Glycine max HOM05D001891 ORTHO05D005832 3.6e-09 67.0 90 45.6
Peaxi162Scf00007g01229 Petunia axillaris HOM05D001891 ORTHO05D005832 3.6e-09 67.0 309 28.2
CAN.G921.8 Capsicum annuum HOM05D001891 ORTHO05D005832 4.7e-09 66.6 316 27.2
Prupe.3G220400 Prunus persica HOM05D001891 ORTHO05D005832 4.7e-09 66.6 80 45.0
EL10Ac7g17313 Beta vulgaris HOM05D001891 ORTHO05D005832 6.1e-09 66.2 79 44.3
CARHR097810 Cardamine hirsuta HOM05D001891 ORTHO05D005832 6.1e-09 66.2 79 45.6
COL.COLO4_12984 Corchorus olitorius HOM05D001891 ORTHO05D005832 6.1e-09 66.2 87 47.1
TPR.G4158 Trifolium pratense HOM05D001891 ORTHO05D005832 6.1e-09 66.2 316 28.2
GSVIVG01030624001 Vitis vinifera HOM05D001891 ORTHO05D005832 6.1e-09 66.2 81 46.9
CANSAT64G2761 Cannabis sativa HOM05D001891 ORTHO05D005832 8.0e-09 65.9 79 45.6
CDE01G0775 Ceratophyllum demersum HOM05D001891 ORTHO05D005832 8.0e-09 65.9 81 42.0
Eucgr.K00860 Eucalyptus grandis HOM05D001891 ORTHO05D005832 8.0e-09 65.9 81 45.7
Gohir.D01G014600 Gossypium hirsutum HOM05D001891 ORTHO05D005832 8.0e-09 65.9 81 48.1
Mapoly0057s0093 Marchantia polymorpha HOM05D001891 ORTHO05D005832 8.0e-09 65.9 89 42.7
Nn1g03668 Nelumbo nucifera HOM05D001891 ORTHO05D005832 8.0e-09 65.9 80 41.2
Potri.017G038700 Populus trichocarpa HOM05D001891 ORTHO05D005832 8.0e-09 65.9 81 44.4
Carub.0003s2190 Capsella rubella HOM05D001891 ORTHO05D005832 1.0e-08 65.5 80 45.0
Cpa.g.sc8.235 Carica papaya HOM05D001891 ORTHO05D005832 1.4e-08 65.1 81 44.4
Haze_12897 Corylus avellana HOM05D001891 ORTHO05D005832 1.4e-08 65.1 327 28.1
Lj3g0012140 Lotus japonicus HOM05D001891 ORTHO05D005832 1.4e-08 65.1 316 26.9
MBI18_g41217_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.4e-08 65.1 81 45.7
PGR142G2396 Punica granatum HOM05D001891 ORTHO05D005832 1.4e-08 65.1 81 44.4
Sp3g19820 Schrenkiella parvula HOM05D001891 ORTHO05D005832 1.4e-08 65.1 80 45.0
A05p26920 Brassica napus HOM05D001891 ORTHO05D005832 1.8e-08 64.7 80 45.0
C05p41560 Brassica napus HOM05D001891 ORTHO05D005832 1.8e-08 64.7 80 45.0
BolC5t32893H Brassica oleracea HOM05D001891 ORTHO05D005832 1.8e-08 64.7 80 45.0
BraA05t21572Z Brassica rapa HOM05D001891 ORTHO05D005832 1.8e-08 64.7 80 45.0
Migut.L01268 Erythranthe guttata HOM05D003388 ORTHO05D003616 1.8e-08 64.7 82 42.7
Oeu041941.2 Olea europaea HOM05D001891 ORTHO05D005832 1.8e-08 64.7 82 45.1
ATR0564G546 Amborella trichopoda HOM05D003388 ORTHO05D003616 3.0e-08 63.9 91 41.8
CsaV3_2G035180 Cucumis sativus L. HOM05D001891 ORTHO05D005832 3.0e-08 63.9 318 28.0
Migut.M00395 Erythranthe guttata HOM05D001891 ORTHO05D005832 3.0e-08 63.9 84 42.9
Thhalv10020639m.g Eutrema salsugineum HOM05D001891 ORTHO05D005832 3.0e-08 63.9 80 43.8
Os04g0629100 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D005832 3.0e-08 63.9 81 44.4
HPP92_009396 Vanilla planifolia HOM05D001891 ORTHO05D005832 3.0e-08 63.9 83 43.4
Gohir.A01G013300 Gossypium hirsutum HOM05D001891 ORTHO05D005832 4.0e-08 63.5 310 28.7
Manes.13G073100 Manihot esculenta HOM05D001891 ORTHO05D005832 4.0e-08 63.5 319 27.3
Prupe.1G278000 Prunus persica HOM05D003388 ORTHO05D003616 4.0e-08 63.5 80 42.5
BcaC05g28122 Brassica carinata HOM05D001891 ORTHO05D005832 5.2e-08 63.2 80 43.8
DCAR_007170 Daucus carota HOM05D003388 ORTHO05D003616 5.2e-08 63.2 90 38.9
ECA238G0562 Erigeron canadensis HOM05D001891 ORTHO05D005832 5.2e-08 63.2 81 44.4
Phvul.005G113700 Phaseolus vulgaris HOM05D001891 ORTHO05D005832 6.8e-08 62.8 343 26.8
AL1G38950 Arabidopsis lyrata HOM05D003388 ORTHO05D003616 8.9e-08 62.4 80 41.2
Lalb_Chr24g0393071 Lupinus albus HOM05D001891 ORTHO05D005832 8.9e-08 62.4 313 27.2
MD13G1069000 Malus domestica HOM05D003388 ORTHO05D003616 8.9e-08 62.4 80 38.8
TWI75G1739 Tripterygium wilfordii HOM05D003388 ORTHO05D003616 8.9e-08 62.4 81 42.0
Ah.15g093450 Amaranthus hybridus HOM05D001891 ORTHO05D005832 1.2e-07 62.0 315 25.7
MSTRG.7787 Avicennia marina HOM05D003388 ORTHO05D003616 1.2e-07 62.0 82 40.2
Aa31LG8G8410 Aethionema arabicum HOM05D001891 ORTHO05D005832 1.5e-07 61.6 306 28.1
BcaB06g26287 Brassica carinata HOM05D001891 ORTHO05D005832 1.5e-07 61.6 80 43.8
MCO06G294 Micromonas commoda HOM05D001891 ORTHO05D005832 1.5e-07 61.6 452 26.3
RcHm_v2.0_Chr4g0439431 Rosa chinensis HOM05D003388 ORTHO05D003616 1.5e-07 61.6 80 41.2
SGA_v2.0_scaffold94G28407 Striga asiatica HOM05D007640 ORTHO05D009514 1.5e-07 61.6 80 42.5
AL3G35970 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 2.0e-07 61.2 305 27.2
BcaC05g26390 Brassica carinata HOM05D003388 ORTHO05D003616 2.0e-07 61.2 95 35.8
CANSAT64G0380 Cannabis sativa HOM05D003388 ORTHO05D003616 2.0e-07 61.2 80 37.5
Cc11_g12730 Coffea canephora HOM05D003388 ORTHO05D003616 2.0e-07 61.2 87 39.1
FAN22G1619 Fragaria x ananassa HOM05D003388 ORTHO05D003616 2.0e-07 61.2 80 41.2
HanXRQChr10g0297501 Helianthus annuus HOM05D001891 ORTHO05D005832 2.0e-07 61.2 90 40.0
PSO832G3938 Papaver somniferum HOM05D003388 ORTHO05D003616 2.0e-07 61.2 82 40.2
Solyc03g051950.4 Solanum lycopersicum HOM05D007640 ORTHO05D009514 2.0e-07 61.2 79 41.8
TWI18G0733 Tripterygium wilfordii HOM05D001891 ORTHO05D005832 2.0e-07 61.2 313 26.8
CARHR025200 Cardamine hirsuta HOM05D003388 ORTHO05D003616 2.6e-07 60.8 80 41.2
CiPaw.03G162900 Carya illinoinensis HOM05D001891 ORTHO05D005832 2.6e-07 60.8 313 26.8
Sed0018691 Sechium edule HOM05D003388 ORTHO05D003616 2.6e-07 60.8 80 41.2
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 2.6e-07 60.8 82 39.0
CAN.G1335.17 Capsicum annuum HOM05D003388 ORTHO05D003616 3.4e-07 60.5 83 39.8
Ciclev10015025m.g Citrus clementina HOM05D001891 ORTHO05D005832 3.4e-07 60.5 311 27.0
Dinv34132 Davidia involucrata HOM05D003388 ORTHO05D003616 3.4e-07 60.5 87 37.9
PSO013G0084 Papaver somniferum HOM05D003388 ORTHO05D003616 3.4e-07 60.5 80 41.2
PSO832G1848 Papaver somniferum HOM05D003388 ORTHO05D003616 3.4e-07 60.5 80 41.2
Eucgr.A02498 Eucalyptus grandis HOM05D007640 ORTHO05D009514 4.4e-07 60.1 80 43.8
Sabra08G0066900 Salix brachista HOM05D003388 ORTHO05D003616 4.4e-07 60.1 80 40.0
THA.LOC104803358 Tarenaya hassleriana HOM05D003388 ORTHO05D003616 4.4e-07 60.1 80 36.2
Zm00001eb005310 Zea mays HOM05D003388 ORTHO05D003616 4.4e-07 60.1 78 42.3
Aqoxy4G02096 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 5.7e-07 59.7 308 27.9
AT3G21820 Arabidopsis thaliana HOM05D001891 ORTHO05D005832 5.7e-07 59.7 305 27.2
Carub.0001s2426 Capsella rubella HOM05D003388 ORTHO05D003616 5.7e-07 59.7 80 40.0
AUR62032817 Chenopodium quinoa HOM05D003388 ORTHO05D003616 5.7e-07 59.7 80 40.0
Manes.01G034100 Manihot esculenta HOM05D003388 ORTHO05D003616 5.7e-07 59.7 80 38.8
PGR102G2155 Punica granatum HOM05D003388 ORTHO05D003616 5.7e-07 59.7 80 41.2
SalBow1G5859 Salvia bowleyana HOM05D007640 ORTHO05D009514 5.7e-07 59.7 92 37.0
AT1G26760 Arabidopsis thaliana HOM05D003388 ORTHO05D003616 7.5e-07 59.3 80 40.0
A09p40170 Brassica napus HOM05D003388 ORTHO05D003616 7.5e-07 59.3 81 40.7
BraA09t39515Z Brassica rapa HOM05D003388 ORTHO05D003616 7.5e-07 59.3 81 40.7
CiPaw.05G132000 Carya illinoinensis HOM05D003388 ORTHO05D003616 7.5e-07 59.3 80 38.8
AUR62005822 Chenopodium quinoa HOM05D003388 ORTHO05D003616 7.5e-07 59.3 80 38.8
Eucgr.B03207 Eucalyptus grandis HOM05D003388 ORTHO05D003616 7.5e-07 59.3 80 43.8
FvH4_4g31050 Fragaria vesca HOM05D003388 ORTHO05D003616 7.5e-07 59.3 80 40.0
FAN12G0832 Fragaria x ananassa HOM05D003388 ORTHO05D003616 7.5e-07 59.3 80 40.0
SalBow7G4184 Salvia bowleyana HOM05D001891 ORTHO05D005832 7.5e-07 59.3 317 27.8
Aqoxy4G02100 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 9.8e-07 58.9 312 27.6
ECA233G4218 Erigeron canadensis HOM05D003388 ORTHO05D003616 9.8e-07 58.9 80 41.2
Gorai.002G016300 Gossypium raimondii HOM05D001891 ORTHO05D005832 9.8e-07 58.9 310 28.4
Os03g0168700 Oryza sativa ssp. japonica HOM05D003388 ORTHO05D003616 9.8e-07 58.9 78 39.7
Potri.008G089500 Populus trichocarpa HOM05D003388 ORTHO05D003616 9.8e-07 58.9 80 38.8
Sopen03g011400 Solanum pennellii HOM05D007640 ORTHO05D009514 9.8e-07 58.9 79 40.5
Cfa008954 Carpinus fangiana HOM05D003388 ORTHO05D003616 1.3e-06 58.5 80 37.5
Hma1.2p1_1079F.1_g254900 Hydrangea macrophylla HOM05D003388 ORTHO05D003616 1.3e-06 58.5 82 35.4
Hma1.2p1_1079F.1_g254910 Hydrangea macrophylla HOM05D003388 ORTHO05D003616 1.3e-06 58.5 82 35.4
MBI18_g10800_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.3e-06 58.5 73 46.6
Peaxi162Scf00463g00325 Petunia axillaris HOM05D007640 ORTHO05D009514 1.3e-06 58.5 79 40.5
C05p24210 Brassica napus HOM05D003388 ORTHO05D003616 1.7e-06 58.2 81 39.5
BolC5t31157H Brassica oleracea HOM05D003388 ORTHO05D003616 1.7e-06 58.2 81 39.5
Gohir.D13G076800 Gossypium hirsutum HOM05D003388 ORTHO05D003616 1.7e-06 58.2 80 37.5
Gorai.013G087800 Gossypium raimondii HOM05D003388 ORTHO05D003616 1.7e-06 58.2 80 37.5
Lsat_1_v5_gn_8_50121 Lactuca sativa HOM05D003388 ORTHO05D003616 1.7e-06 58.2 87 39.1
GSVIVG01033432001 Vitis vinifera HOM05D000525 ORTHO05D007127 1.7e-06 58.2 80 41.2
Haze_11983 Corylus avellana HOM05D003388 ORTHO05D003616 2.2e-06 57.8 80 37.5
HanXRQChr08g0210711 Helianthus annuus HOM05D003388 ORTHO05D003616 2.2e-06 57.8 80 40.0
Nitab4.5_0002532g0020 Nicotiana tabacum HOM05D007640 ORTHO05D009514 2.2e-06 57.8 79 39.2
Pp3c13_21910 Physcomitrium patens HOM05D001891 ORTHO05D005832 2.2e-06 57.8 304 25.0
Rhsim10G0051800 Rhododendron simsii HOM05D003388 ORTHO05D003616 2.2e-06 57.8 100 37.0
Sabra17G0025700 Salix brachista HOM05D001891 ORTHO05D005832 2.2e-06 57.8 76 43.4
Sp3g31340 Schrenkiella parvula HOM05D004492 ORTHO05D005602 2.2e-06 57.8 83 34.9
TAR629G0929 Trochodendron aralioides HOM05D003388 ORTHO05D003616 2.2e-06 57.8 80 36.2
Ciclev10013489m.g Citrus clementina HOM05D000525 ORTHO05D007127 2.8e-06 57.4 80 38.8
Thhalv10007288m.g Eutrema salsugineum HOM05D003388 ORTHO05D003616 2.8e-06 57.4 81 40.7
PGR031G3853 Punica granatum HOM05D007640 ORTHO05D009514 2.8e-06 57.4 79 40.5
Thecc.08G119400 Theobroma cacao HOM05D004492 ORTHO05D005602 2.8e-06 57.4 81 37.0
A07p03030 Brassica napus HOM05D004492 ORTHO05D005602 3.7e-06 57.0 83 36.1
BraA07t28100Z Brassica rapa HOM05D004492 ORTHO05D005602 3.7e-06 57.0 83 36.1
Cre01.g041100 Chlamydomonas reinhardtii HOM05D001891 ORTHO05D005832 3.7e-06 57.0 79 36.7
COL.COLO4_16026 Corchorus olitorius HOM05D007640 ORTHO05D009514 3.7e-06 57.0 80 41.2
COL.COLO4_27999 Corchorus olitorius HOM05D003388 ORTHO05D003616 3.7e-06 57.0 80 38.8
Lalb_Chr06g0173431 Lupinus albus HOM05D007640 ORTHO05D009514 3.7e-06 57.0 79 40.5
Nitab4.5_0005082g0010 Nicotiana tabacum HOM05D007640 ORTHO05D009514 3.7e-06 57.0 79 39.2
Rhsim10G0115600 Rhododendron simsii HOM05D003388 ORTHO05D003616 3.7e-06 57.0 100 36.0
Actinidia01588 Actinidia chinensis HOM05D007640 ORTHO05D009514 4.9e-06 56.6 79 39.2
Actinidia27126 Actinidia chinensis HOM05D007640 ORTHO05D009514 4.9e-06 56.6 79 39.2
BcaC06g36340 Brassica carinata HOM05D004492 ORTHO05D005602 4.9e-06 56.6 83 36.1
Cre02.g116850 Chlamydomonas reinhardtii HOM05D001891 ORTHO05D009514 4.9e-06 56.6 84 41.7
Nn3g17299 Nelumbo nucifera HOM05D003388 ORTHO05D003616 4.9e-06 56.6 80 37.5
SalBow2G1725 Salvia bowleyana HOM05D003388 ORTHO05D003616 4.9e-06 56.6 82 40.2
Thecc.08G119300 Theobroma cacao HOM05D004492 ORTHO05D005602 4.9e-06 56.6 81 35.8
Aa31LG7G8370 Aethionema arabicum HOM05D003388 ORTHO05D003616 6.3e-06 56.2 80 38.8
AL3G50940 Arabidopsis lyrata HOM05D004492 ORTHO05D005602 6.3e-06 56.2 83 34.9
AT2G17900 Arabidopsis thaliana HOM05D004492 ORTHO05D005602 6.3e-06 56.2 83 34.9
GSVIVG01012615001 Vitis vinifera HOM05D003388 ORTHO05D003616 6.3e-06 56.2 80 37.5
Duzib248G0503 Durio zibethinus HOM05D003388 ORTHO05D003616 8.3e-06 55.8 80 37.5
Duzib251G0885 Durio zibethinus HOM05D003388 ORTHO05D003616 8.3e-06 55.8 80 38.8
FAN05G3009 Fragaria x ananassa HOM05D007640 ORTHO05D009514 8.3e-06 55.8 79 38.0
PRCOL_00002991 Prasinoderma coloniale HOM05D007640 ORTHO05D009514 8.3e-06 55.8 94 40.4
RhsimUnG0014200 Rhododendron simsii HOM05D007640 ORTHO05D009514 8.3e-06 55.8 80 40.0


User provided reference genes

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