Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO14G402 Micromonas commoda HOM05D009333 ORTHO05D011489 0.0e+00 2547.7 1321 100.0
MCO16G469 Micromonas commoda HOM05D009333 ORTHO05D011489 0.0e+00 1447.2 1358 58.8
PRCOL_00002631 Prasinoderma coloniale HOM05D009333 ORTHO05D011489 2.9e-244 849.7 1511 37.6
PRCOL_00001301 Prasinoderma coloniale HOM05D009333 ORTHO05D011489 1.7e-228 797.3 1413 37.6
MCO04G064 Micromonas commoda HOM05D009333 ORTHO05D011489 4.3e-211 739.6 1376 36.6
MCO14G141 Micromonas commoda HOM05D009333 ORTHO05D011489 1.6e-170 604.7 1739 28.2
PRCOL_00003146 Prasinoderma coloniale HOM05D009333 ORTHO05D011489 1.9e-166 591.3 1507 29.9
Cre16.g665050 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 1.8e-145 521.5 1873 25.6
Cre17.g720600 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 1.3e-138 498.8 1579 27.1
MCO13G580 Micromonas commoda HOM05D009333 ORTHO05D011489 1.4e-113 415.6 1527 27.1
Cre16.g665100 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 1.7e-103 382.1 2149 22.3
MCO16G144 Micromonas commoda HOM05D009333 ORTHO05D011489 2.8e-101 374.8 1472 26.8
PRCOL_00001059 Prasinoderma coloniale HOM05D009333 ORTHO05D011489 2.4e-97 361.7 1542 24.2
Cre11.g467528 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 4.3e-94 350.9 710 32.1
MCO03G344 Micromonas commoda HOM05D009333 ORTHO05D011489 1.9e-89 335.5 630 35.2
Cre17.g702850 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 1.2e-85 322.8 711 30.7
Cre07.g333535 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 1.7e-82 312.4 664 33.0
Cre10.g444850 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 1.7e-79 302.4 652 32.4
MCO04G501 Micromonas commoda HOM05D009333 ORTHO05D011489 8.9e-76 290.0 1592 24.0
Cre16.g667350 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 1.9e-70 272.3 648 30.9
Cfa026594 Carpinus fangiana HOM05D009333 ORTHO05D011489 2.4e-68 265.4 1378 23.6
Cre12.g532350 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 7.6e-67 260.4 615 30.9
Mapoly0069s0001 Marchantia polymorpha HOM05D009333 ORTHO05D011489 1.5e-51 209.5 1426 22.0
AagrBONN_evm.TU.Sc2ySwM_368.2114 Anthoceros agrestis HOM05D009333 ORTHO05D011489 3.9e-47 194.9 475 29.1
Mapoly0016s0197 Marchantia polymorpha HOM05D009333 ORTHO05D011489 2.4e-44 185.7 567 25.7
Pp3c26_6020 Physcomitrium patens HOM05D009333 ORTHO05D011489 4.2e-33 148.3 406 27.1
Cre16.g667451 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 1.2e-27 130.2 252 34.9
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 1.3e-13 83.6 469 23.5
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 1.7e-13 83.2 441 22.7
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 3.7e-13 82.0 267 29.6
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 1.1e-12 80.5 303 29.7
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 2.4e-12 79.3 404 23.8
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 5.3e-12 78.2 267 28.1
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 5.3e-12 78.2 477 25.6
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 7.0e-12 77.8 275 28.7
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 1.6e-11 76.6 274 27.7
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 1.0e-10 73.9 267 27.3
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 1.3e-10 73.6 259 26.6
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 1.7e-10 73.2 451 23.5
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 1.7e-10 73.2 404 24.0
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 1.7e-10 73.2 443 23.7
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 3.8e-10 72.0 472 22.0
CBR_g19278 Chara braunii HOM05D009333 ORTHO05D011489 3.8e-10 72.0 269 23.8
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 5.0e-10 71.6 218 29.4
TAR624G0173 Trochodendron aralioides HOM05D003674 ORTHO05D004226 5.0e-10 71.6 267 26.2
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 8.5e-10 70.9 267 26.2
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 8.5e-10 70.9 220 30.9
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 1.9e-09 69.7 404 22.0
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 2.5e-09 69.3 281 27.0
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 2.5e-09 69.3 659 21.9
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 2.5e-09 69.3 254 28.7
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 3.2e-09 68.9 414 22.7
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 4.2e-09 68.6 417 23.0
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 4.2e-09 68.6 628 21.7
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 5.5e-09 68.2 259 26.6
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 5.5e-09 68.2 250 27.2
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 5.5e-09 68.2 356 25.0
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 5.5e-09 68.2 405 23.0
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 7.2e-09 67.8 293 24.9
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 9.4e-09 67.4 207 29.5
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 9.4e-09 67.4 406 23.4
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 1.2e-08 67.0 664 20.0
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 1.6e-08 66.6 420 23.1
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 1.6e-08 66.6 279 24.7
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 2.1e-08 66.2 442 23.5
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 2.1e-08 66.2 259 26.6
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 2.7e-08 65.9 276 23.9
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 3.6e-08 65.5 209 27.3
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 3.6e-08 65.5 405 23.7
Hma1.2p1_2586F.1_g324940 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 3.6e-08 65.5 238 26.9
Oeu017491.1 Olea europaea HOM05D003674 ORTHO05D004226 3.6e-08 65.5 284 27.1
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 4.7e-08 65.1 433 21.7
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 6.1e-08 64.7 442 22.9
Pp3c1_28370 Physcomitrium patens HOM05D003674 ORTHO05D004226 6.1e-08 64.7 253 23.3
Manes.13G146400 Manihot esculenta HOM05D003674 ORTHO05D004226 8.0e-08 64.3 270 27.0
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 1.0e-07 63.9 271 24.7
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 1.8e-07 63.2 443 23.7
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 1.8e-07 63.2 628 21.0
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 1.8e-07 63.2 396 24.2
Pp3c2_10230 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.3e-07 62.8 241 24.9
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 2.3e-07 62.8 396 24.2
MSTRG.14332 Avicennia marina HOM05D003674 ORTHO05D004226 3.0e-07 62.4 244 25.4
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 4.0e-07 62.0 443 22.8
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 4.0e-07 62.0 443 22.8
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 4.0e-07 62.0 443 22.8
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 4.0e-07 62.0 267 26.2
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 5.2e-07 61.6 443 22.6
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 5.2e-07 61.6 443 22.8
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 5.2e-07 61.6 443 22.8
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 5.2e-07 61.6 447 23.7
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 6.8e-07 61.2 273 26.4
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 8.8e-07 60.8 443 22.6
CBR_g29491 Chara braunii HOM05D009333 ORTHO05D011489 1.2e-06 60.5 276 23.9
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 1.5e-06 60.1 555 21.3
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 2.0e-06 59.7 302 24.8
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 2.0e-06 59.7 405 23.0
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 2.6e-06 59.3 443 22.6
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 2.6e-06 59.3 443 22.3
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 2.6e-06 59.3 443 22.3
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 2.6e-06 59.3 443 22.3
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 2.6e-06 59.3 443 22.3
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 3.4e-06 58.9 443 22.1
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 7.5e-06 57.8 259 25.1
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 7.5e-06 57.8 302 25.2
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 9.7e-06 57.4 259 25.5


User provided reference genes

Program Settings