Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 4.0e-110 401.4 190 100.0
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 1.2e-61 240.4 189 55.0
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 1.2e-61 240.4 189 55.0
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 2.6e-61 239.2 188 55.3
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 2.6e-61 239.2 188 55.3
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 3.4e-61 238.8 188 54.8
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 4.4e-61 238.4 188 55.3
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 4.4e-61 238.4 188 54.8
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 4.4e-61 238.4 188 54.8
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 9.9e-61 237.3 188 54.3
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 9.9e-61 237.3 188 54.3
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 9.9e-61 237.3 188 54.3
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 9.9e-61 237.3 188 54.3
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 9.9e-61 237.3 188 54.3
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 1.3e-60 236.9 189 54.5
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 1.3e-60 236.9 188 53.7
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 1.3e-60 236.9 188 53.7
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 1.7e-60 236.5 188 55.9
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 2.2e-60 236.1 188 55.9
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 2.2e-60 236.1 188 55.3
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 2.9e-60 235.7 189 54.0
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 2.9e-60 235.7 189 54.0
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 2.9e-60 235.7 189 54.0
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.9e-60 235.7 188 55.9
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.9e-60 235.7 188 55.9
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.9e-60 235.7 188 55.9
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 2.9e-60 235.7 189 54.5
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 2.9e-60 235.7 188 55.9
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 3.8e-60 235.3 188 54.8
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 3.8e-60 235.3 188 55.3
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 4.9e-60 235.0 188 52.7
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 4.9e-60 235.0 186 54.8
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.9e-60 235.0 188 54.8
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 4.9e-60 235.0 190 55.8
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 4.9e-60 235.0 188 54.8
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 4.9e-60 235.0 188 56.9
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 6.4e-60 234.6 188 55.9
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 6.4e-60 234.6 188 54.8
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 6.4e-60 234.6 188 55.9
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 6.4e-60 234.6 188 54.3
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 6.4e-60 234.6 188 54.8
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 6.4e-60 234.6 188 55.3
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 6.4e-60 234.6 188 54.8
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.4e-60 234.2 188 54.8
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.4e-60 234.2 188 54.3
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.4e-60 234.2 188 54.3
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 8.4e-60 234.2 188 55.9
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 8.4e-60 234.2 188 54.8
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 8.4e-60 234.2 188 54.8
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 8.4e-60 234.2 188 54.8
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 8.4e-60 234.2 188 54.8
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 8.4e-60 234.2 188 55.3
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 1.1e-59 233.8 188 55.9
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.1e-59 233.8 188 54.8
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.1e-59 233.8 188 54.8
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 1.1e-59 233.8 188 54.8
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.1e-59 233.8 188 53.7
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 1.1e-59 233.8 188 55.3
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.1e-59 233.8 188 55.3
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.9e-59 233.0 188 53.7
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 1.9e-59 233.0 188 54.8
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 1.9e-59 233.0 188 53.7
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 2.4e-59 232.6 188 54.8
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 2.4e-59 232.6 188 54.8
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 2.4e-59 232.6 188 54.3
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 2.4e-59 232.6 188 55.3
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 2.4e-59 232.6 188 55.3
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 2.4e-59 232.6 188 53.7
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 2.4e-59 232.6 189 54.0
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 2.4e-59 232.6 189 54.0
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 2.4e-59 232.6 188 54.8
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 3.2e-59 232.3 188 55.3
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 3.2e-59 232.3 188 53.7
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 3.2e-59 232.3 188 53.7
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 3.2e-59 232.3 188 54.3
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 3.2e-59 232.3 188 55.3
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 3.2e-59 232.3 188 55.3
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 3.2e-59 232.3 188 53.2
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 3.2e-59 232.3 188 54.3
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 3.2e-59 232.3 188 54.8
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 3.2e-59 232.3 189 55.6
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 4.2e-59 231.9 188 53.7
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 4.2e-59 231.9 188 53.7
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 4.2e-59 231.9 188 53.7
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 4.2e-59 231.9 188 54.3
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 4.2e-59 231.9 188 54.3
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 4.2e-59 231.9 188 53.7
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 4.2e-59 231.9 188 54.8
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 4.2e-59 231.9 188 54.3
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 4.2e-59 231.9 188 54.8
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 5.4e-59 231.5 189 55.0
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 5.4e-59 231.5 188 54.3
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 7.1e-59 231.1 188 54.8
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 7.1e-59 231.1 188 55.3
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 7.1e-59 231.1 188 53.7
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 7.1e-59 231.1 188 53.7
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 7.1e-59 231.1 188 53.7
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 7.1e-59 231.1 188 53.7
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 7.1e-59 231.1 188 53.7
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 7.1e-59 231.1 188 53.7
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 7.1e-59 231.1 188 53.7
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 7.1e-59 231.1 188 53.7
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 7.1e-59 231.1 188 55.3
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 7.1e-59 231.1 188 53.7
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 9.3e-59 230.7 188 53.7
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 9.3e-59 230.7 188 53.2
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.2e-58 230.3 188 54.3
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 1.2e-58 230.3 188 53.7
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 1.2e-58 230.3 188 54.3
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 1.2e-58 230.3 188 53.7
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 1.6e-58 229.9 188 53.2
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 1.6e-58 229.9 188 53.2
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 2.1e-58 229.6 188 54.3
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 2.1e-58 229.6 188 53.2
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 2.1e-58 229.6 189 53.4
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 2.1e-58 229.6 188 54.8
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 2.7e-58 229.2 188 54.3
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 2.7e-58 229.2 188 53.2
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 2.7e-58 229.2 188 53.2
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 2.7e-58 229.2 189 54.5
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 2.7e-58 229.2 188 54.3
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 3.5e-58 228.8 188 53.7
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 3.5e-58 228.8 188 53.2
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 4.6e-58 228.4 188 53.2
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 4.6e-58 228.4 188 53.2
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 4.6e-58 228.4 188 54.3
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 6.0e-58 228.0 188 53.2
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 6.0e-58 228.0 188 54.8
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 1.0e-57 227.3 188 53.7
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 1.3e-57 226.9 189 54.0
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.3e-57 226.9 200 52.5
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 2.3e-57 226.1 188 52.7
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 2.3e-57 226.1 197 52.8
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 3.0e-57 225.7 188 52.7
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 3.0e-57 225.7 188 54.3
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 4.3e-56 221.9 188 53.7
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.3e-55 220.3 208 48.6
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 6.9e-54 214.5 189 52.4
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 1.6e-50 203.4 188 50.0
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 3.5e-50 202.2 197 47.7
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 3.0e-49 199.1 254 39.0
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 3.3e-48 195.7 163 52.8
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.8e-47 192.6 188 47.3
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 2.8e-47 192.6 194 48.5
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 6.4e-44 181.4 160 48.8
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 5.6e-40 168.3 132 54.5
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 5.8e-37 158.3 145 49.0
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 7.6e-37 157.9 144 49.3
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 2.2e-36 156.4 143 49.0
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 2.9e-36 156.0 144 50.0
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.1e-35 154.1 189 43.4
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 2.7e-34 149.4 188 41.5
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 6.0e-34 148.3 144 47.2
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 6.0e-34 148.3 134 47.0
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.3e-31 140.6 142 45.1
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.3e-31 140.6 96 61.5
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 4.5e-29 132.1 172 40.1
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 5.9e-29 131.7 96 58.3
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.0e-28 131.0 96 58.3
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.7e-28 130.2 162 41.4
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.8e-28 129.0 93 58.1
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 5.0e-28 128.6 125 48.0
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.1e-27 127.5 105 51.4
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.1e-27 127.5 125 48.0
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.5e-27 126.3 93 58.1
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.2e-27 125.6 93 57.0
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.2e-27 125.6 93 57.0
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 1.2e-26 124.0 169 39.1
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 7.9e-26 121.3 125 47.2
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 5.7e-24 115.2 85 57.6
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 5.5e-19 98.6 74 54.1
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.1e-14 82.8 100 40.0
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.1e-14 82.8 100 40.0
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.1e-14 82.8 100 40.0
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.1e-14 82.8 100 40.0
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.1e-14 82.8 100 40.0
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.1e-14 82.8 100 40.0
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 9.1e-14 81.3 44 75.0
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 2.6e-13 79.7 93 40.9
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 2.9e-12 76.3 92 40.2
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.8e-12 75.9 159 30.2
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 5.5e-11 72.0 65 49.2
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 2.7e-10 69.7 44 63.6


User provided reference genes

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