Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO13G515 Micromonas commoda HOM05D003546 ORTHO05D005667 6.4e-197 690.6 374 100.0
Pp3s34_123 Physcomitrium patens HOM05D003546 ORTHO05D005667 1.8e-26 124.4 332 33.4
PRCOL_00001162 Prasinoderma coloniale HOM05D003546 ORTHO05D005667 9.4e-23 112.1 363 32.2
DCAR_021047 Daucus carota HOM05D003546 ORTHO05D005667 7.5e-20 102.4 330 30.3
Phvul.005G070000 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 2.8e-19 100.5 336 31.0
CDE02G3780 Ceratophyllum demersum HOM05D003546 ORTHO05D005667 8.3e-19 99.0 320 30.3
MCO15G239 Micromonas commoda HOM05D003546 ORTHO05D005667 1.8e-18 97.8 339 35.7
PGSC0003DMG400007057 Solanum tuberosum HOM05D003546 ORTHO05D005667 2.4e-18 97.4 322 30.7
Cre10.g424500 Chlamydomonas reinhardtii HOM05D003546 ORTHO05D005667 5.4e-18 96.3 336 31.2
Solyc07g062070.3 Solanum lycopersicum HOM05D003546 ORTHO05D005667 5.4e-18 96.3 322 30.7
VMungo1080G1435 Vigna mungo HOM05D003546 ORTHO05D005667 5.4e-18 96.3 330 30.9
Sopen07g030330 Solanum pennellii HOM05D003546 ORTHO05D005667 7.0e-18 95.9 322 30.7
Actinidia12611 Actinidia chinensis HOM05D003546 ORTHO05D005667 1.2e-17 95.1 351 29.6
Nitab4.5_0003618g0070 Nicotiana tabacum HOM05D003546 ORTHO05D005667 2.0e-17 94.4 322 29.8
Gorai.004G271100 Gossypium raimondii HOM05D003546 ORTHO05D005667 3.5e-17 93.6 321 30.5
Potri.011G114100 Populus trichocarpa HOM05D003546 ORTHO05D005667 3.5e-17 93.6 319 29.5
Sc03g0010770 Simmondsia chinensis HOM05D003546 ORTHO05D005667 3.5e-17 93.6 319 28.8
Ah.06g187600 Amaranthus hybridus HOM05D000137 ORTHO05D000503 4.5e-17 93.2 334 29.0
Manes.15G101700 Manihot esculenta HOM05D003546 ORTHO05D005667 4.5e-17 93.2 320 29.4
Cfa023965 Carpinus fangiana HOM05D003546 ORTHO05D005667 5.9e-17 92.8 333 29.1
Glyma.13G263400 Glycine max HOM05D003546 ORTHO05D005667 5.9e-17 92.8 330 30.0
Oeu010039.1 Olea europaea HOM05D003546 ORTHO05D005667 5.9e-17 92.8 320 30.9
Gohir.D08G254200 Gossypium hirsutum HOM05D003546 ORTHO05D005667 7.7e-17 92.4 321 30.2
Lj3g0000931 Lotus japonicus HOM05D003546 ORTHO05D005667 7.7e-17 92.4 333 28.2
Nn3g20902 Nelumbo nucifera HOM05D003546 ORTHO05D005667 7.7e-17 92.4 320 28.4
Lj8A144T67 Lonicera japonica HOM05D003546 ORTHO05D005667 1.0e-16 92.0 333 29.1
Sabra11G0100300 Salix brachista HOM05D003546 ORTHO05D005667 1.0e-16 92.0 351 28.2
Nitab4.5_0001140g0050 Nicotiana tabacum HOM05D003546 ORTHO05D005667 1.3e-16 91.7 322 30.4
SGA_v2.0_scaffold73G24377 Striga asiatica HOM05D003546 ORTHO05D005667 1.3e-16 91.7 319 30.4
vmacro11984 Vaccinium macrocarpon HOM05D003546 ORTHO05D005667 2.3e-16 90.9 320 30.0
HanXRQChr15g0495341 Helianthus annuus HOM05D003546 ORTHO05D005667 2.9e-16 90.5 336 30.4
Prupe.4G154400 Prunus persica HOM05D003546 ORTHO05D005667 2.9e-16 90.5 334 28.4
Dinv26695 Davidia involucrata HOM05D003546 ORTHO05D005667 3.8e-16 90.1 334 29.9
Os01g0665400 Oryza sativa ssp. japonica HOM05D003546 ORTHO05D005667 3.8e-16 90.1 321 31.5
Glyma.13G263300 Glycine max HOM05D003546 ORTHO05D005667 5.0e-16 89.7 331 30.2
Glyma.15G240800 Glycine max HOM05D003546 ORTHO05D005667 5.0e-16 89.7 319 29.8
TAR629G0142 Trochodendron aralioides HOM05D003546 ORTHO05D005667 6.6e-16 89.4 320 29.4
Zm00001eb359730 Zea mays HOM05D003546 ORTHO05D005667 6.6e-16 89.4 346 29.8
MSTRG.6697 Avicennia marina HOM05D003546 ORTHO05D005667 1.1e-15 88.6 319 29.8
Ca_28944_v3 Cicer arietinum L. HOM05D003546 ORTHO05D005667 1.1e-15 88.6 189 31.2
Lsat_1_v5_gn_7_100340 Lactuca sativa HOM05D003546 ORTHO05D005667 1.1e-15 88.6 321 28.7
Rhsim06G0213200 Rhododendron simsii HOM05D003546 ORTHO05D005667 1.1e-15 88.6 336 29.5
CiPaw.11G154600 Carya illinoinensis HOM05D003546 ORTHO05D005667 1.5e-15 88.2 332 28.6
Ciclev10020632m.g Citrus clementina HOM05D003546 ORTHO05D005667 1.5e-15 88.2 333 29.1
FAN21G0932 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.5e-15 88.2 332 28.3
THA.LOC104812287 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 1.5e-15 88.2 334 30.2
CAN.G375.59 Capsicum annuum HOM05D003546 ORTHO05D005667 1.9e-15 87.8 332 29.2
ClCG07G010350 Citrullus lanatus HOM05D003546 ORTHO05D005667 1.9e-15 87.8 319 29.8
Migut.G00787 Erythranthe guttata HOM05D003546 ORTHO05D005667 1.9e-15 87.8 332 29.8
FvH4_3g17420 Fragaria vesca HOM05D003546 ORTHO05D005667 1.9e-15 87.8 332 28.9
FAN11G2746 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.9e-15 87.8 332 28.9
FAN16G1735 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.9e-15 87.8 332 28.9
Thecc.07G148500 Theobroma cacao HOM05D003546 ORTHO05D005667 1.9e-15 87.8 320 29.1
ATR0256G001 Amborella trichopoda HOM05D003546 ORTHO05D005667 2.5e-15 87.4 351 28.2
Medtr2g072830 Medicago truncatula HOM05D003546 ORTHO05D005667 2.5e-15 87.4 320 30.0
RcHm_v2.0_Chr5g0028951 Rosa chinensis HOM05D003546 ORTHO05D005667 2.5e-15 87.4 320 29.1
Aqoxy1G01847 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 3.3e-15 87.0 319 27.0
Lalb_Chr25g0285581 Lupinus albus HOM05D003546 ORTHO05D005667 3.3e-15 87.0 332 29.8
MD11G1273100 Malus domestica HOM05D003546 ORTHO05D005667 3.3e-15 87.0 331 27.2
AUR62013937 Chenopodium quinoa HOM05D003546 ORTHO05D005667 4.2e-15 86.7 319 28.8
VMungo1080G0318 Vigna mungo HOM05D003546 ORTHO05D005667 4.2e-15 86.7 319 29.8
Cpa.g.sc77.106 Carica papaya HOM05D003546 ORTHO05D005667 5.5e-15 86.3 320 29.4
Duzib213G0800 Durio zibethinus HOM05D003546 ORTHO05D005667 5.5e-15 86.3 321 29.3
PSO541G1993 Papaver somniferum HOM05D003546 ORTHO05D005667 5.5e-15 86.3 320 28.4
Psat1g007800 Pisum sativum HOM05D003546 ORTHO05D005667 5.5e-15 86.3 320 30.0
PGR031G2804 Punica granatum HOM05D003546 ORTHO05D005667 5.5e-15 86.3 343 31.2
AagrBONN_evm.TU.Sc2ySwM_344.5210 Anthoceros agrestis HOM05D003546 ORTHO05D005667 7.2e-15 85.9 328 30.8
Gohir.A08G234000 Gossypium hirsutum HOM05D003546 ORTHO05D005667 7.2e-15 85.9 321 29.6
TWI38G2125 Tripterygium wilfordii HOM05D003546 ORTHO05D005667 7.2e-15 85.9 319 29.8
CANSAT56G3227 Cannabis sativa HOM05D003546 ORTHO05D005667 9.5e-15 85.5 320 28.4
PSO675G0773 Papaver somniferum HOM05D003546 ORTHO05D005667 9.5e-15 85.5 321 27.7
QL08p024489 Quercus lobata HOM05D003546 ORTHO05D005667 9.5e-15 85.5 323 28.2
Rhsim06G0212800 Rhododendron simsii HOM05D003546 ORTHO05D005667 9.5e-15 85.5 318 28.9
Atru.chr2.1822 Acer truncatum HOM05D003546 ORTHO05D005667 1.2e-14 85.1 333 29.7
arahy.Tifrunner.gnm1.ann1.T44SL9 Arachis hypogaea HOM05D003546 ORTHO05D005667 1.2e-14 85.1 327 29.7
BcaB07g34045 Brassica carinata HOM05D003546 ORTHO05D005667 1.6e-14 84.7 328 29.0
COL.COLO4_17394 Corchorus olitorius HOM05D003546 ORTHO05D005667 2.1e-14 84.3 321 29.3
ECA236G3331 Erigeron canadensis HOM05D003546 ORTHO05D005667 2.1e-14 84.3 323 27.6
Ca_03453_v3 Cicer arietinum L. HOM05D003546 ORTHO05D005667 2.8e-14 84.0 320 30.0
MELO3C016138.2 Cucumis melo HOM05D003546 ORTHO05D005667 2.8e-14 84.0 330 29.7
Sed0015060 Sechium edule HOM05D003546 ORTHO05D005667 2.8e-14 84.0 346 28.3
Peaxi162Scf00111g01221 Petunia axillaris HOM05D003546 ORTHO05D005667 4.7e-14 83.2 315 28.6
Hund10394 Selenicereus undatus HOM05D003546 ORTHO05D005667 4.7e-14 83.2 320 28.1
Oeu058446.1 Olea europaea HOM05D003546 ORTHO05D005667 6.1e-14 82.8 141 37.6
CsaV3_4G007980 Cucumis sativus L. HOM05D003546 ORTHO05D005667 8.0e-14 82.4 319 29.8
THA.LOC104813974 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 8.0e-14 82.4 331 29.9
TPR.G27299 Trifolium pratense HOM05D003546 ORTHO05D005667 8.0e-14 82.4 326 28.5
AL1G29390 Arabidopsis lyrata HOM05D003546 ORTHO05D005667 1.0e-13 82.0 338 28.7
arahy.Tifrunner.gnm1.ann1.Y31H1M Arachis hypogaea HOM05D003546 ORTHO05D005667 1.0e-13 82.0 327 28.4
arahy.Tifrunner.gnm1.ann1.UIE2A5 Arachis hypogaea HOM05D003546 ORTHO05D005667 1.4e-13 81.6 327 29.4
BcaC07g41403 Brassica carinata HOM05D003546 ORTHO05D005667 1.4e-13 81.6 337 28.8
CARHR017740 Cardamine hirsuta HOM05D003546 ORTHO05D005667 1.4e-13 81.6 321 28.3
Carub.0001s1691 Capsella rubella HOM05D003546 ORTHO05D005667 1.8e-13 81.3 322 29.8
AT1G17160 Arabidopsis thaliana HOM05D003546 ORTHO05D005667 2.3e-13 80.9 333 28.2
Eucgr.F03224 Eucalyptus grandis HOM05D003546 ORTHO05D005667 2.3e-13 80.9 330 26.4
Thhalv10007918m.g Eutrema salsugineum HOM05D003546 ORTHO05D005667 2.3e-13 80.9 324 29.3
PRCOL_00001203 Prasinoderma coloniale HOM05D003546 ORTHO05D005667 2.3e-13 80.9 387 30.2
Sed0005020 Sechium edule HOM05D003546 ORTHO05D005667 3.0e-13 80.5 156 36.5
Hma1.2p1_0713F.1_g207830 Hydrangea macrophylla HOM05D003546 ORTHO05D005667 4.0e-13 80.1 320 29.1
Aa31LG7G2010 Aethionema arabicum HOM05D003546 ORTHO05D005667 5.2e-13 79.7 337 27.3
Pp3c6_13210 Physcomitrium patens HOM05D003546 ORTHO05D005667 8.9e-13 79.0 337 28.8
BraA06t24467Z Brassica rapa HOM05D003546 ORTHO05D005667 1.2e-12 78.6 341 28.2
SalBow8G3953 Salvia bowleyana HOM05D003546 ORTHO05D005667 1.2e-12 78.6 342 27.2
Aqoxy4G00144 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 1.5e-12 78.2 336 28.9
BolC5t30265H Brassica oleracea HOM05D003546 ORTHO05D005667 1.5e-12 78.2 325 28.6
C05p15580 Brassica napus HOM05D003546 ORTHO05D005667 2.0e-12 77.8 325 28.6
SHI19235 Sapria himalayana HOM05D003546 ORTHO05D005667 2.0e-12 77.8 311 28.0
Sp1g15310 Schrenkiella parvula HOM05D003546 ORTHO05D005667 2.6e-12 77.4 333 28.2
AUR62019676 Chenopodium quinoa HOM05D003546 ORTHO05D005667 4.4e-12 76.6 141 35.5
Mapoly0014s0091 Marchantia polymorpha HOM05D003546 ORTHO05D005667 4.4e-12 76.6 336 29.5
Pp3c5_14610 Physcomitrium patens HOM05D000518 ORTHO05D005667 1.3e-11 75.1 344 29.9
BcaC05g25661 Brassica carinata HOM05D003546 ORTHO05D005667 1.7e-11 74.7 325 28.3
Haze_08456 Corylus avellana HOM05D003546 ORTHO05D005667 2.2e-11 74.3 141 36.2
A06p13070 Brassica napus HOM05D003546 ORTHO05D005667 3.7e-11 73.6 339 28.3
HPP92_024629 Vanilla planifolia HOM05D003546 ORTHO05D005667 3.7e-11 73.6 334 26.0
Cfa019500 Carpinus fangiana HOM05D003546 ORTHO05D005667 4.9e-11 73.2 320 27.8
CBR_g61469 Chara braunii HOM05D003546 ORTHO05D005667 1.1e-10 72.0 146 37.0
SMO163G0088 Selaginella moellendorffii HOM05D003546 ORTHO05D005667 1.4e-10 71.6 325 27.7
unitig_37.g12553 Utricularia gibba HOM05D003546 ORTHO05D005667 2.4e-10 70.9 285 29.5
CSS0041975 Camellia sinensis var. sinensis HOM05D003546 ORTHO05D005667 2.0e-09 67.8 319 27.6
SMO119G0495 Selaginella moellendorffii HOM05D003546 ORTHO05D005667 1.0e-08 65.5 325 26.2
Cre12.g531150 Chlamydomonas reinhardtii HOM05D003546 ORTHO05D005667 2.3e-08 64.3 121 38.0
TAR627G0069 Trochodendron aralioides HOM05D003546 ORTHO05D005667 2.3e-08 64.3 294 27.2
CBR_g12046 Chara braunii HOM05D000559 ORTHO05D000596 1.5e-07 61.6 311 27.0
CBR_g24152 Chara braunii HOM05D000559 ORTHO05D000596 3.3e-07 60.5 311 26.7
DCAR_023945 Daucus carota HOM05D000559 ORTHO05D000596 4.3e-07 60.1 311 26.0
Zm00001eb365810 Zea mays HOM05D000559 ORTHO05D000596 9.5e-07 58.9 311 27.3
SEGI_01492 Sequoiadendron giganteum HOM05D000559 ORTHO05D000596 2.1e-06 57.8 311 25.7
CBR_g3800 Chara braunii HOM05D000559 ORTHO05D000596 2.8e-06 57.4 311 25.1
CBR_g3802 Chara braunii HOM05D000559 ORTHO05D000596 3.6e-06 57.0 311 25.4
ATR0691G298 Amborella trichopoda HOM05D000559 ORTHO05D000596 6.1e-06 56.2 352 25.6
Cre13.g561850 Chlamydomonas reinhardtii HOM05D000559 ORTHO05D000596 6.1e-06 56.2 349 27.5


User provided reference genes

Program Settings