Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 0.0e+00 1100.9 592 100.0
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 9.8e-91 338.6 647 36.6
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 6.4e-90 335.9 634 35.2
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 1.9e-89 334.3 627 36.2
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 3.2e-89 333.6 629 35.3
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 7.0e-89 332.4 627 35.7
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 7.0e-89 332.4 632 34.5
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 7.0e-89 332.4 632 36.2
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 9.2e-89 332.0 627 35.7
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 9.2e-89 332.0 627 35.7
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 1.2e-88 331.6 622 35.2
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 4.6e-88 329.7 637 35.9
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 1.0e-87 328.6 631 35.3
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 1.3e-87 328.2 632 35.9
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 1.7e-87 327.8 640 35.5
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 2.3e-87 327.4 628 35.8
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 3.0e-87 327.0 628 36.0
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 8.6e-87 325.5 633 35.5
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 1.1e-86 325.1 628 35.4
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 2.5e-86 323.9 641 35.4
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 3.3e-86 323.6 631 34.9
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 3.3e-86 323.6 621 34.8
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 4.3e-86 323.2 624 33.8
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 5.6e-86 322.8 632 35.6
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 7.3e-86 322.4 631 35.2
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 7.3e-86 322.4 631 35.7
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 7.3e-86 322.4 631 34.9
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 9.5e-86 322.0 649 34.4
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 1.2e-85 321.6 645 34.9
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 1.2e-85 321.6 634 35.2
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.6e-85 321.2 634 35.3
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 2.8e-85 320.5 631 34.5
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 2.8e-85 320.5 631 35.2
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 6.2e-85 319.3 641 34.2
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 6.2e-85 319.3 634 34.2
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 6.2e-85 319.3 643 34.8
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 6.2e-85 319.3 636 34.0
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 8.1e-85 318.9 633 34.4
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 8.1e-85 318.9 623 35.0
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 1.1e-84 318.5 630 34.8
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.4e-84 318.2 623 34.2
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 1.4e-84 318.2 643 34.5
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.4e-84 318.2 645 34.6
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 1.8e-84 317.8 634 34.1
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 2.3e-84 317.4 630 34.3
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 2.3e-84 317.4 640 33.9
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 2.3e-84 317.4 637 34.5
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 2.3e-84 317.4 629 34.3
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 3.1e-84 317.0 636 34.6
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 3.1e-84 317.0 630 34.9
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 3.1e-84 317.0 643 34.5
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 4.0e-84 316.6 627 34.1
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 4.0e-84 316.6 636 34.7
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 5.2e-84 316.2 634 33.9
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 5.2e-84 316.2 629 34.3
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 5.2e-84 316.2 633 34.8
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 6.8e-84 315.8 630 34.4
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 8.9e-84 315.5 621 35.3
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.2e-83 315.1 627 34.9
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 1.2e-83 315.1 636 33.0
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.5e-83 314.7 636 34.6
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 1.5e-83 314.7 639 34.4
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 2.0e-83 314.3 623 33.1
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 2.6e-83 313.9 630 34.6
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 3.4e-83 313.5 633 34.4
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 5.8e-83 312.8 625 34.1
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 9.8e-83 312.0 644 34.9
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 8.3e-82 308.9 632 34.3
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.4e-81 308.1 629 35.0
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 2.4e-81 307.4 637 32.7
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 5.4e-81 306.2 627 34.8
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 5.4e-81 306.2 627 34.3
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 7.1e-81 305.8 629 34.7
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 2.1e-80 304.3 630 33.8
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 2.1e-80 304.3 636 33.3
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 1.3e-79 301.6 624 35.1
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 2.3e-79 300.8 623 33.2
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 3.9e-79 300.1 627 33.3
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 2.5e-78 297.4 579 35.1
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 8.1e-77 292.4 633 34.8
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 1.2e-75 288.5 590 34.6
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 1.3e-74 285.0 569 34.6
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 2.9e-74 283.9 632 31.5
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 2.9e-74 283.9 588 35.0
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 2.4e-73 280.8 578 33.9
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 3.5e-72 276.9 615 34.0
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 4.6e-72 276.6 714 29.4
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 1.0e-71 275.4 696 31.2
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 8.6e-71 272.3 503 36.4
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 3.3e-70 270.4 564 35.1
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 7.3e-70 269.2 571 33.3
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 6.4e-66 256.1 762 28.9
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 1.3e-63 248.4 628 31.2
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 8.7e-63 245.7 493 34.5
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.1e-60 238.8 627 30.8
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 2.1e-56 224.6 335 39.4
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 2.1e-56 224.6 340 37.1
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.1e-54 218.8 532 30.8
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 1.3e-53 215.3 335 38.5
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.3e-45 188.7 675 26.5
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 3.7e-45 187.2 439 32.6
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 3.7e-45 187.2 474 31.0
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 2.5e-38 164.5 277 35.4
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 4.3e-38 163.7 255 35.7
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 7.4e-38 162.9 204 41.2
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 6.3e-37 159.8 365 34.2
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 5.3e-36 156.8 256 35.2
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 1.0e-34 152.5 244 36.5
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 6.5e-34 149.8 255 32.9
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 1.6e-29 135.2 381 30.7
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 3.8e-26 124.0 343 32.4
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 1.1e-22 112.5 166 38.6
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 7.4e-22 109.8 184 38.6
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 3.4e-19 100.9 138 37.7
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 2.3e-15 88.2 110 39.1
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 2.3e-15 88.2 114 44.7
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 4.4e-14 84.0 106 37.7
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 9.7e-14 82.8 106 37.7
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 9.7e-14 82.8 214 32.2
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 4.1e-12 77.4 106 35.8
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 3.2e-09 67.8 640 21.6
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 1.6e-08 65.5 90 36.7
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-06 59.3 73 47.9
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 2.6e-06 58.2 78 48.7
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 4.4e-06 57.4 78 48.7
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 7.5e-06 56.6 84 35.7


User provided reference genes

Program Settings