Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 0.0e+00 1441.4 884 100.0
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 2.1e-84 318.2 882 33.7
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 3.0e-83 314.3 751 36.8
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 8.6e-75 286.2 752 34.2
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 9.5e-74 282.7 823 31.5
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 6.8e-72 276.6 755 31.3
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 2.0e-71 275.0 773 31.8
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 3.4e-71 274.2 760 32.5
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 3.4e-71 274.2 875 32.5
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 4.4e-71 273.9 740 32.0
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 1.7e-70 271.9 772 33.4
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 2.9e-70 271.2 809 32.4
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 3.8e-70 270.8 727 31.4
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 6.4e-70 270.0 772 31.7
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 8.4e-70 269.6 752 33.6
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 1.9e-69 268.5 815 31.7
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 7.1e-69 266.5 752 32.6
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 7.1e-69 266.5 759 30.6
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 1.2e-68 265.8 809 31.5
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 1.6e-68 265.4 776 32.2
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 1.6e-68 265.4 727 33.3
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 2.1e-68 265.0 745 33.2
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 3.5e-68 264.2 825 31.2
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 3.5e-68 264.2 714 31.7
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 3.5e-68 264.2 757 32.5
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 4.6e-68 263.8 755 32.2
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 7.8e-68 263.1 808 32.4
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 7.8e-68 263.1 746 31.4
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 3.0e-67 261.2 805 32.2
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 5.1e-67 260.4 760 31.7
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 6.6e-67 260.0 818 32.0
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 8.7e-67 259.6 760 31.7
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.9e-66 258.5 764 31.9
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 2.5e-66 258.1 818 31.9
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 2.5e-66 258.1 767 32.5
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 3.3e-66 257.7 725 32.6
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 4.3e-66 257.3 828 31.4
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 7.3e-66 256.5 726 31.7
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 1.2e-65 255.8 953 32.3
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.2e-65 255.8 759 31.4
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 2.1e-65 255.0 756 30.8
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 2.8e-65 254.6 780 30.0
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 3.6e-65 254.2 745 31.1
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 4.7e-65 253.8 752 32.3
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 6.2e-65 253.4 755 29.8
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 8.1e-65 253.1 753 30.9
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 1.4e-64 252.3 755 31.1
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 1.4e-64 252.3 806 30.3
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 1.8e-64 251.9 746 30.6
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 2.4e-64 251.5 758 30.9
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 5.3e-64 250.4 755 29.8
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 5.3e-64 250.4 809 32.3
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 6.9e-64 250.0 808 31.1
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 9.0e-64 249.6 719 30.6
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 9.0e-64 249.6 769 31.7
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 9.0e-64 249.6 733 32.2
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 1.5e-63 248.8 714 30.4
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 1.5e-63 248.8 759 32.8
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 1.5e-63 248.8 732 32.4
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 1.5e-63 248.8 833 32.3
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 1.5e-63 248.8 759 31.4
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 2.0e-63 248.4 747 29.2
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 3.4e-63 247.7 712 30.8
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 4.4e-63 247.3 753 32.8
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 5.8e-63 246.9 760 30.4
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 9.9e-63 246.1 811 29.0
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 9.9e-63 246.1 760 32.8
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 1.3e-62 245.7 721 32.5
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 2.2e-62 245.0 819 31.6
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 3.8e-62 244.2 740 32.8
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 3.8e-62 244.2 777 30.8
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 3.8e-62 244.2 727 31.2
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 6.4e-62 243.4 717 29.8
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 6.4e-62 243.4 720 31.2
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 1.4e-61 242.3 813 30.6
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 2.4e-61 241.5 727 30.8
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 5.4e-61 240.4 753 29.6
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 7.1e-61 240.0 808 30.3
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 9.3e-61 239.6 735 31.2
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.7e-60 238.0 760 30.7
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 2.7e-60 238.0 738 31.3
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 4.6e-60 237.3 782 31.3
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.0e-59 236.1 758 30.5
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 1.0e-59 236.1 749 31.6
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 1.3e-59 235.7 731 32.1
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 1.7e-59 235.3 735 30.6
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 3.0e-59 234.6 763 29.8
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 3.0e-59 234.6 758 30.6
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 3.9e-59 234.2 758 31.3
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 5.1e-59 233.8 778 30.3
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 6.6e-59 233.4 755 32.7
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 8.7e-59 233.0 750 31.2
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 2.5e-58 231.5 818 31.1
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.3e-57 229.2 762 30.2
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 4.8e-57 227.3 756 30.7
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 1.1e-56 226.1 758 28.8
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 2.4e-56 224.9 756 29.0
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 2.4e-56 224.9 747 30.5
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 4.0e-56 224.2 750 28.8
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 1.2e-55 222.6 730 30.4
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.5e-55 222.2 735 30.7
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 2.0e-55 221.9 730 29.7
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 2.0e-55 221.9 756 29.1
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 4.5e-55 220.7 728 30.4
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 9.9e-55 219.5 766 30.8
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 1.3e-54 219.2 734 31.9
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.7e-54 218.8 729 29.4
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 3.8e-54 217.6 733 31.9
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 6.4e-54 216.9 715 28.8
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 3.2e-53 214.5 740 29.3
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 7.1e-53 213.4 732 30.2
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 7.1e-53 213.4 824 29.4
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 2.7e-52 211.5 807 27.6
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 4.6e-52 210.7 715 29.4
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 1.8e-51 208.8 715 29.2
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 8.7e-51 206.5 762 29.7
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 1.5e-47 195.7 709 28.3
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 7.6e-47 193.4 603 31.5
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 7.6e-47 193.4 673 29.1
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 3.2e-45 188.0 966 30.6
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 3.2e-45 188.0 662 31.0
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 7.1e-45 186.8 665 31.0
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 2.8e-41 174.9 345 40.3
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 4.8e-41 174.1 689 29.2
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 6.5e-38 163.7 380 38.9
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 2.5e-37 161.8 371 35.8
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 3.5e-36 157.9 745 27.5
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 7.9e-36 156.8 742 26.0
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 5.7e-34 150.6 955 29.3
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 1.6e-33 149.1 348 33.9
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 3.7e-33 147.9 161 44.7
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 2.9e-30 138.3 705 25.5
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 3.8e-30 137.9 513 30.2
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 5.0e-30 137.5 753 25.5
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 3.2e-29 134.8 161 41.0
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 1.2e-28 132.9 152 40.8
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 6.1e-28 130.6 152 40.8
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 7.4e-26 123.6 327 34.9
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.7e-25 122.5 204 34.8
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 1.4e-24 119.4 156 43.6
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 1.4e-24 119.4 156 43.6
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 3.1e-24 118.2 253 36.0
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 5.3e-24 117.5 241 36.9
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 2.0e-23 115.5 125 45.6
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 4.7e-20 104.4 553 24.8
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 5.1e-19 100.9 95 48.4
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 9.7e-18 96.7 480 26.2
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 6.3e-17 94.0 221 34.4
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 1.8e-16 92.4 221 34.8
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 1.8e-16 92.4 219 35.2
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 1.2e-15 89.7 476 26.9
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 1.2e-15 89.7 137 39.4
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 4.5e-15 87.8 476 26.7
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 8.5e-14 83.6 414 27.3
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.2e-13 81.6 125 46.4
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 9.4e-13 80.1 218 32.1
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 1.0e-11 76.6 173 35.3
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.0e-11 76.6 125 44.8
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 3.0e-11 75.1 195 32.3
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 3.9e-11 74.7 203 28.6
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 6.7e-11 73.9 425 24.7
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 3.1e-08 65.1 132 31.8
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 6.5e-06 57.4 55 54.5


User provided reference genes

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