Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO13G324 Micromonas commoda HOM05D003779 ORTHO05D002678 0.0e+00 1228.0 939 100.0
Pp3c7_2840 Physcomitrium patens HOM05D003779 ORTHO05D002678 1.3e-12 79.7 85 40.0
EL10Ac8g18849 Beta vulgaris HOM05D003779 ORTHO05D002678 2.9e-12 78.6 146 32.2
FAN28G2365 Fragaria x ananassa HOM05D003779 ORTHO05D002678 2.9e-12 78.6 156 33.3
Gorai.013G217400 Gossypium raimondii HOM05D003779 ORTHO05D002678 3.8e-12 78.2 92 39.1
FAN26G3236 Fragaria x ananassa HOM05D003779 ORTHO05D002678 5.0e-12 77.8 89 40.4
Atru.chr7.134 Acer truncatum HOM05D003779 ORTHO05D002678 6.5e-12 77.4 93 40.9
GSVIVG01023597001 Vitis vinifera HOM05D003779 ORTHO05D002678 6.5e-12 77.4 83 42.2
Gohir.A13G184900 Gossypium hirsutum HOM05D003779 ORTHO05D002678 1.1e-11 76.6 92 38.0
RcHm_v2.0_Chr2g0085981 Rosa chinensis HOM05D003779 ORTHO05D002678 1.1e-11 76.6 89 40.4
CAN.G1116.7 Capsicum annuum HOM05D003779 ORTHO05D002678 1.4e-11 76.3 141 34.8
Pp3c11_22610 Physcomitrium patens HOM05D003779 ORTHO05D002678 1.4e-11 76.3 85 41.2
ATR0739G197 Amborella trichopoda HOM05D003779 ORTHO05D002678 1.9e-11 75.9 92 35.9
COL.COLO4_18776 Corchorus olitorius HOM05D003779 ORTHO05D002678 1.9e-11 75.9 121 34.7
Duzib187G1590 Durio zibethinus HOM05D003779 ORTHO05D002678 1.9e-11 75.9 92 37.0
Gohir.D13G191400 Gossypium hirsutum HOM05D003779 ORTHO05D002678 1.9e-11 75.9 92 38.0
Mapoly0032s0123 Marchantia polymorpha HOM05D003779 ORTHO05D002678 1.9e-11 75.9 84 39.3
Lj9C714G7 Lonicera japonica HOM05D003779 ORTHO05D002678 2.5e-11 75.5 83 39.8
Manes.06G037900 Manihot esculenta HOM05D003779 ORTHO05D002678 2.5e-11 75.5 91 37.4
Sabra06G0143300 Salix brachista HOM05D003779 ORTHO05D002678 2.5e-11 75.5 85 40.0
Ciclev10007258m.g Citrus clementina HOM05D003779 ORTHO05D002678 3.2e-11 75.1 82 37.8
Dinv42884 Davidia involucrata HOM05D003779 ORTHO05D002678 3.2e-11 75.1 83 41.0
Dinv43216 Davidia involucrata HOM05D003779 ORTHO05D002678 3.2e-11 75.1 83 41.0
Manes.14G111700 Manihot esculenta HOM05D003779 ORTHO05D002678 3.2e-11 75.1 83 39.8
PSO017G3118 Papaver somniferum HOM05D003779 ORTHO05D002678 3.2e-11 75.1 109 34.9
Cpa.g.sc46.127 Carica papaya HOM05D003779 ORTHO05D002678 4.2e-11 74.7 93 37.6
FvH4_1g01180 Fragaria vesca HOM05D003779 ORTHO05D002678 4.2e-11 74.7 156 32.7
FAN19G1766 Fragaria x ananassa HOM05D003779 ORTHO05D002678 4.2e-11 74.7 156 32.7
Nn8g39802 Nelumbo nucifera HOM05D003779 ORTHO05D002678 4.2e-11 74.7 83 39.8
Potri.018G110100 Populus trichocarpa HOM05D003779 ORTHO05D002678 4.2e-11 74.7 93 39.8
SHI02625 Sapria himalayana HOM05D003779 ORTHO05D002678 4.2e-11 74.7 78 42.3
Sc08g0004970 Simmondsia chinensis HOM05D003779 ORTHO05D002678 4.2e-11 74.7 64 45.3
CSS0005827 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 5.5e-11 74.3 83 39.8
CDE05G1362 Ceratophyllum demersum HOM05D003779 ORTHO05D002678 5.5e-11 74.3 142 32.4
PSO170G5719 Papaver somniferum HOM05D003779 ORTHO05D002678 5.5e-11 74.3 109 34.9
Sabra18G0093100 Salix brachista HOM05D003779 ORTHO05D002678 5.5e-11 74.3 89 41.6
Actinidia23546 Actinidia chinensis HOM05D003779 ORTHO05D002678 7.2e-11 73.9 89 36.0
AUR62039744 Chenopodium quinoa HOM05D003779 ORTHO05D002678 7.2e-11 73.9 84 39.3
SalBow1G6151 Salvia bowleyana HOM05D003779 ORTHO05D002678 7.2e-11 73.9 125 31.2
Sopen07g001470 Solanum pennellii HOM05D003779 ORTHO05D002678 7.2e-11 73.9 149 33.6
FAN23G1864 Fragaria x ananassa HOM05D003779 ORTHO05D002678 9.3e-11 73.6 156 32.1
Potri.006G187400 Populus trichocarpa HOM05D003779 ORTHO05D002678 9.3e-11 73.6 83 39.8
Solyc07g005320.3 Solanum lycopersicum HOM05D003779 ORTHO05D002678 9.3e-11 73.6 149 32.9
TWI63G1714 Tripterygium wilfordii HOM05D003779 ORTHO05D002678 9.3e-11 73.6 123 33.3
CiPaw.15G174200 Carya illinoinensis HOM05D003779 ORTHO05D002678 1.2e-10 73.2 83 39.8
Glyma.09G097600 Glycine max HOM05D003779 ORTHO05D002678 1.2e-10 73.2 94 36.2
Gohir.D07G030200 Gossypium hirsutum HOM05D003779 ORTHO05D002678 1.2e-10 73.2 87 39.1
Oeu026546.1 Olea europaea HOM05D003779 ORTHO05D002678 1.2e-10 73.2 83 39.8
VMungo1215G0704 Vigna mungo HOM05D003779 ORTHO05D002678 1.2e-10 73.2 63 46.0
Actinidia04285 Actinidia chinensis HOM05D003779 ORTHO05D002678 1.6e-10 72.8 89 37.1
CSS0008137 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 1.6e-10 72.8 83 38.6
Haze_19235 Corylus avellana HOM05D003779 ORTHO05D002678 1.6e-10 72.8 143 31.5
ECA234G1613 Erigeron canadensis HOM05D003779 ORTHO05D002678 1.6e-10 72.8 139 33.1
QL02p092676 Quercus lobata HOM05D003779 ORTHO05D002678 1.6e-10 72.8 98 36.7
Rhsim01G0036200 Rhododendron simsii HOM05D003779 ORTHO05D002678 1.6e-10 72.8 83 38.6
Rhsim01G0045400 Rhododendron simsii HOM05D003779 ORTHO05D002678 1.6e-10 72.8 83 38.6
Sabra06G0142300 Salix brachista HOM05D003779 ORTHO05D002678 1.6e-10 72.8 85 38.8
TWI34G0110 Tripterygium wilfordii HOM05D003779 ORTHO05D002678 1.6e-10 72.8 64 43.8
Lalb_Chr13g0300951 Lupinus albus HOM05D003779 ORTHO05D002678 2.1e-10 72.4 95 37.9
AUR62043250 Chenopodium quinoa HOM05D003779 ORTHO05D002678 2.7e-10 72.0 136 34.6
Gorai.009G054800 Gossypium raimondii HOM05D003779 ORTHO05D002678 2.7e-10 72.0 117 32.5
HanXRQChr10g0314671 Helianthus annuus HOM05D003779 ORTHO05D002678 2.7e-10 72.0 158 28.5
HPP92_020551 Vanilla planifolia HOM05D003779 ORTHO05D002678 2.7e-10 72.0 83 36.1
Ah.14g078430 Amaranthus hybridus HOM05D003779 ORTHO05D002678 3.6e-10 71.6 83 39.8
Aqoxy7G03464 Aquilegia oxysepala HOM05D003779 ORTHO05D002678 3.6e-10 71.6 83 36.1
CANSAT11G0231 Cannabis sativa HOM05D003779 ORTHO05D002678 3.6e-10 71.6 83 38.6
CiPaw.16G114900 Carya illinoinensis HOM05D003779 ORTHO05D002678 3.6e-10 71.6 84 36.9
Cre17.g745547 Chlamydomonas reinhardtii HOM05D003779 ORTHO05D002678 3.6e-10 71.6 104 35.6
Lsat_1_v5_gn_5_91481 Lactuca sativa HOM05D003779 ORTHO05D002678 3.6e-10 71.6 83 39.8
Phvul.009G194000 Phaseolus vulgaris HOM05D003779 ORTHO05D002678 3.6e-10 71.6 83 38.6
TPR.G35880 Trifolium pratense HOM05D003779 ORTHO05D002678 3.6e-10 71.6 84 39.3
Ca_14533_v3 Cicer arietinum L. HOM05D003779 ORTHO05D002678 4.6e-10 71.2 84 39.3
DCAR_020882 Daucus carota HOM05D003779 ORTHO05D002678 4.6e-10 71.2 98 35.7
Lj6g0022686 Lotus japonicus HOM05D003779 ORTHO05D002678 4.6e-10 71.2 83 38.6
Prupe.7G260100 Prunus persica HOM05D003779 ORTHO05D002678 4.6e-10 71.2 150 32.0
vmacro06092 Vaccinium macrocarpon HOM05D003779 ORTHO05D002678 4.6e-10 71.2 95 36.8
VMungo1309G0106 Vigna mungo HOM05D003779 ORTHO05D002678 4.6e-10 71.2 83 38.6
arahy.Tifrunner.gnm1.ann1.Y7PKX5 Arachis hypogaea HOM05D003779 ORTHO05D002678 6.1e-10 70.9 83 38.6
MELO3C010242.2 Cucumis melo HOM05D003779 ORTHO05D002678 6.1e-10 70.9 142 31.0
CsaV3_1G028740 Cucumis sativus L. HOM05D003779 ORTHO05D002678 6.1e-10 70.9 144 32.6
DCAR_019379 Daucus carota HOM05D003779 ORTHO05D002678 6.1e-10 70.9 83 38.6
Glyma.15G205600 Glycine max HOM05D003779 ORTHO05D002678 6.1e-10 70.9 83 38.6
Peaxi162Scf00347g00821 Petunia axillaris HOM05D003779 ORTHO05D002678 6.1e-10 70.9 83 38.6
AL8G34140 Arabidopsis lyrata HOM05D003779 ORTHO05D002678 7.9e-10 70.5 137 31.4
arahy.Tifrunner.gnm1.ann1.MXR4WM Arachis hypogaea HOM05D003779 ORTHO05D002678 7.9e-10 70.5 64 43.8
BolC3t13903H Brassica oleracea HOM05D003779 ORTHO05D002678 7.9e-10 70.5 135 31.9
BraA03t10557Z Brassica rapa HOM05D003779 ORTHO05D002678 7.9e-10 70.5 137 31.4
Carub.0008s1859 Capsella rubella HOM05D003779 ORTHO05D002678 7.9e-10 70.5 136 30.9
Gohir.D05G053000 Gossypium hirsutum HOM05D003779 ORTHO05D002678 7.9e-10 70.5 117 31.6
Gorai.001G031400 Gossypium raimondii HOM05D003779 ORTHO05D002678 7.9e-10 70.5 83 37.3
HanXRQChr12g0357201 Helianthus annuus HOM05D003779 ORTHO05D002678 7.9e-10 70.5 145 33.8
SGA_v2.0_scaffold387G50508 Striga asiatica HOM05D003779 ORTHO05D002678 7.9e-10 70.5 84 39.3
C03p14630 Brassica napus HOM05D003779 ORTHO05D002678 1.0e-09 70.1 135 31.9
Nitab4.5_0008534g0010 Nicotiana tabacum HOM05D003779 ORTHO05D002678 1.0e-09 70.1 83 38.6
Oeu050477.1 Olea europaea HOM05D003779 ORTHO05D002678 1.0e-09 70.1 83 38.6
Phvul.003G157600 Phaseolus vulgaris HOM05D003779 ORTHO05D002678 1.0e-09 70.1 63 44.4
AT5G58040 Arabidopsis thaliana HOM05D003779 ORTHO05D002678 1.3e-09 69.7 137 30.7
BcaB01g04473 Brassica carinata HOM05D003779 ORTHO05D002678 1.3e-09 69.7 137 31.4
Gohir.A05G051500 Gossypium hirsutum HOM05D003779 ORTHO05D002678 1.3e-09 69.7 117 31.6
Gohir.A07G026300 Gossypium hirsutum HOM05D003779 ORTHO05D002678 1.3e-09 69.7 83 37.3
MBI15_g10629_MAGBIO Magnolia biondii HOM05D003779 ORTHO05D002678 1.3e-09 69.7 83 36.1
Nitab4.5_0001201g0070 Nicotiana tabacum HOM05D003779 ORTHO05D002678 1.3e-09 69.7 83 38.6
TAR625G1002 Trochodendron aralioides HOM05D003779 ORTHO05D002678 1.3e-09 69.7 83 36.1
Aa31LG3G13870 Aethionema arabicum HOM05D003779 ORTHO05D002678 1.8e-09 69.3 135 32.6
A10p16130 Brassica napus HOM05D003779 ORTHO05D002678 1.8e-09 69.3 146 30.1
BraA10t43616Z Brassica rapa HOM05D003779 ORTHO05D002678 1.8e-09 69.3 146 30.1
Cfa020847 Carpinus fangiana HOM05D003779 ORTHO05D002678 1.8e-09 69.3 143 30.8
Duzib168G2294 Durio zibethinus HOM05D003779 ORTHO05D002678 1.8e-09 69.3 83 37.3
THA.LOC104813541 Tarenaya hassleriana HOM05D003779 ORTHO05D002678 1.8e-09 69.3 83 36.1
BcaB08g36155 Brassica carinata HOM05D003779 ORTHO05D002678 3.0e-09 68.6 138 30.4
C09p49960 Brassica napus HOM05D003779 ORTHO05D002678 3.0e-09 68.6 137 30.7
BolC9t57849H Brassica oleracea HOM05D003779 ORTHO05D002678 3.0e-09 68.6 137 30.7
Dinv41398 Davidia involucrata HOM05D003779 ORTHO05D002678 3.0e-09 68.6 83 36.1
Rhsim03G0256100 Rhododendron simsii HOM05D003779 ORTHO05D002678 3.0e-09 68.6 80 38.8
A03p12430 Brassica napus HOM05D003779 ORTHO05D002678 3.9e-09 68.2 137 30.7
Thhalv10012479m.g Eutrema salsugineum HOM05D003779 ORTHO05D002678 3.9e-09 68.2 137 31.4
Lalb_Chr08g0233951 Lupinus albus HOM05D003779 ORTHO05D002678 3.9e-09 68.2 83 36.1
Lalb_Chr08g0234021 Lupinus albus HOM05D003779 ORTHO05D002678 3.9e-09 68.2 83 36.1
BcaC04g19912 Brassica carinata HOM05D003779 ORTHO05D002678 6.7e-09 67.4 137 30.7
Medtr2g450210 Medicago truncatula HOM05D003779 ORTHO05D002678 6.7e-09 67.4 84 38.1
Psat1g022120 Pisum sativum HOM05D003779 ORTHO05D002678 6.7e-09 67.4 156 30.8
SalBow1G3877 Salvia bowleyana HOM05D003779 ORTHO05D002678 6.7e-09 67.4 124 29.0
CARHR271850 Cardamine hirsuta HOM05D003779 ORTHO05D002678 8.7e-09 67.0 196 27.0
MD02G1009900 Malus domestica HOM05D003779 ORTHO05D002678 8.7e-09 67.0 128 32.0
TPR.G829 Trifolium pratense HOM05D007976 ORTHO05D002678 8.7e-09 67.0 44 54.5
Migut.J01330 Erythranthe guttata HOM05D003779 ORTHO05D002678 1.1e-08 66.6 64 40.6
Sp6g19720 Schrenkiella parvula HOM05D003779 ORTHO05D002678 1.1e-08 66.6 158 27.8
AagrBONN_evm.TU.Sc2ySwM_344.140 Anthoceros agrestis HOM05D003779 ORTHO05D002678 1.5e-08 66.2 119 29.4
PGR102G2779 Punica granatum HOM05D003779 ORTHO05D002678 1.5e-08 66.2 121 31.4
Medtr4g122070 Medicago truncatula HOM05D007976 ORTHO05D002678 2.5e-08 65.5 44 54.5
Sed0025790 Sechium edule HOM05D003779 ORTHO05D002678 2.5e-08 65.5 147 30.6
PGR031G2802 Punica granatum HOM05D007976 ORTHO05D002678 3.3e-08 65.1 75 37.3
SGA_v2.0_scaffold206G41814 Striga asiatica HOM05D003779 ORTHO05D002678 3.3e-08 65.1 84 36.9
TAR636G1028 Trochodendron aralioides HOM05D003779 ORTHO05D002678 3.3e-08 65.1 83 33.7
Dinv17810 Davidia involucrata HOM05D003779 ORTHO05D002678 4.3e-08 64.7 84 35.7
Sed0010991 Sechium edule HOM05D003779 ORTHO05D002678 4.3e-08 64.7 148 29.7
THA.LOC104817824 Tarenaya hassleriana HOM05D003779 ORTHO05D002678 5.7e-08 64.3 142 30.3
Thecc.09G033700 Theobroma cacao HOM05D003779 ORTHO05D002678 5.7e-08 64.3 304 24.3
Lj6A690G74 Lonicera japonica HOM05D007976 ORTHO05D002678 3.7e-07 61.6 82 35.4
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 3.7e-07 61.6 61 41.0
Ca_21441_v3 Cicer arietinum L. HOM05D007976 ORTHO05D002678 4.8e-07 61.2 48 45.8
QL06p012216 Quercus lobata HOM05D007976 ORTHO05D002678 6.3e-07 60.8 54 42.6
SMO115G0353 Selaginella moellendorffii HOM05D003779 ORTHO05D002678 6.3e-07 60.8 80 31.2
AT3G66652 Arabidopsis thaliana HOM05D003528 ORTHO05D015900 8.2e-07 60.5 76 36.8
CDE02G3961 Ceratophyllum demersum HOM05D003779 ORTHO05D002678 8.2e-07 60.5 54 42.6
Haze_01305 Corylus avellana HOM05D007976 ORTHO05D002678 8.2e-07 60.5 58 37.9
ATR0693G160 Amborella trichopoda HOM05D003779 ORTHO05D002678 1.1e-06 60.1 54 37.0
Glyma.15G140800 Glycine max HOM05D007976 ORTHO05D002678 1.1e-06 60.1 76 39.5
Zm00001eb055800 Zea mays HOM05D003779 ORTHO05D002678 1.1e-06 60.1 78 34.6
Zm00001eb215820 Zea mays HOM05D003779 ORTHO05D002678 1.1e-06 60.1 78 34.6
COL.COLO4_34619 Corchorus olitorius HOM05D007976 ORTHO05D002678 1.4e-06 59.7 65 36.9
ECA246G2174 Erigeron canadensis HOM05D007976 ORTHO05D002678 1.8e-06 59.3 82 37.8
HanXRQChr05g0146071 Helianthus annuus HOM05D007976 ORTHO05D002678 1.8e-06 59.3 65 40.0
Os03g0308900 Oryza sativa ssp. japonica HOM05D003779 ORTHO05D002678 1.8e-06 59.3 45 46.7
PRCOL_00006854 Prasinoderma coloniale HOM05D003779 ORTHO05D002678 1.8e-06 59.3 98 32.7
PSO170G4144 Papaver somniferum HOM05D007976 ORTHO05D002678 2.4e-06 58.9 49 40.8
Phvul.006G117800 Phaseolus vulgaris HOM05D007976 ORTHO05D002678 2.4e-06 58.9 55 45.5
Prupe.1G117900 Prunus persica HOM05D007976 ORTHO05D002678 2.4e-06 58.9 46 45.7
VMungo0540G0247 Vigna mungo HOM05D007976 ORTHO05D002678 3.1e-06 58.5 56 42.9
Dinv15173 Davidia involucrata HOM05D007976 ORTHO05D002678 4.1e-06 58.2 53 35.8
Glyma.09G035800 Glycine max HOM05D007976 ORTHO05D002678 4.1e-06 58.2 78 39.7
MBI18_g32027_MAGBIO Magnolia biondii HOM05D007976 ORTHO05D002678 4.1e-06 58.2 54 37.0
GSVIVG01034996001 Vitis vinifera HOM05D007976 ORTHO05D002678 5.3e-06 57.8 48 41.7
C03p42300 Brassica napus HOM05D003528 ORTHO05D015900 6.9e-06 57.4 67 37.3
PSO357G0305 Papaver somniferum HOM05D007976 ORTHO05D002678 6.9e-06 57.4 45 42.2
CBR_g45968 Chara braunii HOM05D003779 ORTHO05D002678 9.1e-06 57.0 39 51.3
Zm00001eb014820 Zea mays HOM05D003779 ORTHO05D002678 9.1e-06 57.0 64 37.5


User provided reference genes

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