Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 4.4e-209 731.1 379 100.0
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 2.1e-123 446.4 355 64.2
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 1.8e-122 443.4 340 66.8
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 5.3e-122 441.8 317 69.7
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 6.9e-122 441.4 315 69.5
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 1.5e-121 440.3 354 63.0
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.5e-121 440.3 317 69.4
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 3.4e-121 439.1 317 69.4
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 3.4e-121 439.1 325 67.7
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 3.4e-121 439.1 345 65.2
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 4.5e-121 438.7 317 67.5
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 7.6e-121 438.0 317 69.4
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 7.6e-121 438.0 331 65.9
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 9.9e-121 437.6 321 67.3
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 9.9e-121 437.6 317 68.5
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 9.9e-121 437.6 317 68.1
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 9.9e-121 437.6 330 65.8
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.3e-120 437.2 323 67.2
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.7e-120 436.8 341 64.8
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 1.7e-120 436.8 317 68.1
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 2.2e-120 436.4 320 68.4
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 2.9e-120 436.0 315 69.2
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 2.9e-120 436.0 326 66.3
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 2.9e-120 436.0 318 67.9
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 3.8e-120 435.6 341 64.8
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 3.8e-120 435.6 321 67.6
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 4.9e-120 435.3 315 69.2
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 4.9e-120 435.3 328 65.2
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 8.4e-120 434.5 317 68.8
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 8.4e-120 434.5 315 68.9
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 8.4e-120 434.5 315 68.9
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 8.4e-120 434.5 317 68.8
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 8.4e-120 434.5 317 68.5
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 1.1e-119 434.1 315 68.9
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 1.1e-119 434.1 315 68.9
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 1.1e-119 434.1 347 64.6
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 1.1e-119 434.1 329 66.0
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 1.4e-119 433.7 317 68.8
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 1.4e-119 433.7 314 68.2
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.9e-119 433.3 317 67.2
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 1.9e-119 433.3 320 67.8
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 2.4e-119 433.0 315 68.9
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 2.4e-119 433.0 317 68.5
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 2.4e-119 433.0 317 68.5
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 2.4e-119 433.0 317 67.5
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 2.4e-119 433.0 329 65.3
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 2.4e-119 433.0 317 68.8
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 3.2e-119 432.6 347 62.8
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.2e-119 432.2 320 66.9
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 5.5e-119 431.8 320 66.9
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 5.5e-119 431.8 330 65.2
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 7.1e-119 431.4 341 63.0
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 7.1e-119 431.4 320 66.2
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 7.1e-119 431.4 320 66.2
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 9.3e-119 431.0 317 66.2
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.2e-118 430.6 317 68.1
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 1.2e-118 430.6 317 67.8
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 1.6e-118 430.3 317 67.5
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 1.6e-118 430.3 335 63.9
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 2.1e-118 429.9 338 63.3
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.7e-118 429.5 315 67.6
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 2.7e-118 429.5 320 66.2
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 3.5e-118 429.1 333 65.8
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 3.5e-118 429.1 317 67.5
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 3.5e-118 429.1 320 66.9
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 3.5e-118 429.1 315 67.6
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 6.0e-118 428.3 315 69.2
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.0e-118 428.3 320 65.9
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 1.3e-117 427.2 315 67.0
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 1.8e-117 426.8 330 65.2
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.8e-117 426.8 320 65.9
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.8e-117 426.8 320 65.9
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.8e-117 426.8 319 66.5
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 1.8e-117 426.8 317 65.6
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 3.0e-117 426.0 320 67.2
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 3.0e-117 426.0 317 65.9
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 3.9e-117 425.6 320 65.9
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 3.9e-117 425.6 318 66.4
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 1.1e-116 424.1 330 64.5
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 1.1e-116 424.1 320 66.2
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 1.5e-116 423.7 325 66.2
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 1.5e-116 423.7 334 63.5
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 2.5e-116 422.9 325 66.5
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 2.5e-116 422.9 329 64.4
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 3.3e-116 422.5 344 62.2
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 3.3e-116 422.5 315 67.0
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 4.3e-116 422.2 343 62.7
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 4.3e-116 422.2 327 64.2
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 5.6e-116 421.8 315 66.0
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 5.6e-116 421.8 318 65.1
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.4e-116 421.4 337 63.5
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 7.4e-116 421.4 329 64.1
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.6e-115 420.2 318 65.4
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 1.6e-115 420.2 330 64.2
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 3.7e-115 419.1 326 63.5
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 6.2e-115 418.3 329 64.1
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.1e-114 417.5 293 69.6
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 1.1e-114 417.5 330 62.1
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 1.4e-114 417.2 317 64.7
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.8e-114 416.8 318 65.7
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 1.8e-114 416.8 356 61.2
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.4e-114 416.4 327 63.3
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 4.0e-114 415.6 318 65.4
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 9.0e-114 414.5 324 66.0
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 9.0e-114 414.5 360 59.7
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 3.8e-112 409.1 360 59.7
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 4.9e-112 408.7 365 57.3
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 2.5e-111 406.4 289 67.5
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 9.3e-111 404.4 307 64.2
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 9.3e-111 404.4 353 59.2
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 1.8e-109 400.2 321 63.9
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 3.0e-109 399.4 317 62.8
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 3.3e-108 396.0 381 55.6
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 3.1e-106 389.4 286 66.4
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.0e-104 384.4 298 62.8
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 1.7e-104 383.6 358 56.7
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 2.9e-104 382.9 328 60.7
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.1e-102 376.7 325 60.0
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 4.6e-102 375.6 320 61.2
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 1.0e-101 374.4 366 55.5
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 3.9e-101 372.5 315 61.0
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.7e-99 367.1 307 59.0
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 4.8e-99 365.5 307 61.6
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.0e-97 360.1 273 63.7
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 2.5e-95 353.2 280 63.6
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.2e-95 352.8 396 51.0
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 2.7e-94 349.7 252 67.5
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 1.8e-93 347.1 334 56.0
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.2e-91 340.1 364 53.6
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.4e-90 337.4 247 66.0
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 1.5e-89 334.0 247 68.8
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 6.5e-88 328.6 238 68.9
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.7e-86 323.2 248 66.9
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 6.7e-85 318.5 240 65.0
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.3e-83 312.0 275 60.0
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.0e-82 308.5 358 49.2
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 9.1e-82 308.1 233 64.4
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 2.0e-81 307.0 322 52.8
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.7e-80 303.9 243 64.2
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 5.5e-79 298.9 317 52.7
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.2e-75 287.0 245 60.0
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.6e-73 280.8 331 49.5
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 5.5e-63 245.7 188 64.4
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 1.0e-61 241.5 203 62.6
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 3.8e-56 223.0 323 44.0
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 9.5e-55 218.4 286 46.5
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 3.9e-48 196.4 161 59.0
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 7.5e-44 182.2 140 64.3
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 3.2e-42 176.8 233 40.8
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 8.6e-40 168.7 209 48.3
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 1.1e-37 161.8 113 69.9
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 7.5e-36 155.6 130 56.9
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.3e-35 154.8 120 61.7
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 1.9e-34 151.0 249 39.8
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.3e-32 144.8 103 65.0
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 9.5e-31 138.7 95 67.4
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.2e-28 131.7 96 66.7
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 3.8e-27 126.7 76 78.9
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 4.9e-27 126.3 336 34.2
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 7.8e-25 119.0 89 59.6
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 4.3e-23 113.2 110 56.4
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 3.6e-22 110.2 84 58.3
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.1e-21 107.1 87 56.3
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 2.6e-20 104.0 190 38.9
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 3.0e-16 90.5 73 61.6
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 1.1e-15 88.6 81 53.1
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 5.6e-15 86.3 55 72.7
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.0e-12 77.8 71 49.3
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 2.0e-12 77.8 70 61.4
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 6.4e-11 72.8 57 64.9
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 1.6e-09 68.2 73 47.9
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 3.3e-07 60.5 63 44.4
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 8.1e-06 55.8 78 47.4


User provided reference genes

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