Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 3.2e-215 751.5 391 100.0
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 3.2e-21 107.1 130 46.2
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 7.1e-21 105.9 130 44.6
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.3e-19 101.7 285 29.1
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 1.1e-18 98.6 134 44.0
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 1.6e-17 94.7 152 38.8
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 2.4e-16 90.9 210 28.1
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 8.9e-16 89.0 208 35.1
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 1.5e-15 88.2 211 32.7
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 3.4e-15 87.0 121 40.5
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 9.9e-15 85.5 202 34.2
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 1.7e-14 84.7 145 36.6
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 2.2e-14 84.3 207 33.3
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 2.9e-14 84.0 160 36.9
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 3.8e-14 83.6 203 29.1
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 4.9e-14 83.2 165 36.4
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 6.4e-14 82.8 121 42.1
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 1.1e-13 82.0 121 39.7
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 1.4e-13 81.6 207 31.9
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 1.4e-13 81.6 200 34.0
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 2.4e-13 80.9 129 36.4
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 3.2e-13 80.5 121 39.7
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 3.2e-13 80.5 131 35.1
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 3.2e-13 80.5 187 34.2
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 3.2e-13 80.5 183 29.5
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 3.2e-13 80.5 256 28.1
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 3.2e-13 80.5 204 32.4
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 4.2e-13 80.1 207 31.4
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 7.1e-13 79.3 202 29.2
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 7.1e-13 79.3 207 31.9
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 7.1e-13 79.3 256 27.7
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 9.3e-13 79.0 199 32.2
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 1.2e-12 78.6 202 27.7
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 1.2e-12 78.6 243 28.4
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 1.2e-12 78.6 205 30.7
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 1.6e-12 78.2 200 32.0
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 1.6e-12 78.2 207 32.4
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 2.7e-12 77.4 197 30.5
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 2.7e-12 77.4 210 29.5
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 3.5e-12 77.0 129 34.9
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 4.6e-12 76.6 206 28.6
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 6.0e-12 76.3 229 29.3
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 6.0e-12 76.3 210 30.5
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 6.0e-12 76.3 193 33.2
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 6.0e-12 76.3 205 29.8
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 7.8e-12 75.9 208 29.8
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 1.0e-11 75.5 146 32.2
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 1.0e-11 75.5 132 34.1
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 1.0e-11 75.5 132 34.1
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.0e-11 75.5 201 29.4
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 1.0e-11 75.5 123 35.8
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 1.3e-11 75.1 123 38.2
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.3e-11 75.1 123 38.2
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.3e-11 75.1 123 38.2
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 1.3e-11 75.1 145 34.5
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 1.7e-11 74.7 189 30.7
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 1.7e-11 74.7 164 35.4
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 1.7e-11 74.7 203 29.6
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 2.3e-11 74.3 121 37.2
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 2.3e-11 74.3 126 38.1
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.3e-11 74.3 139 35.3
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 2.3e-11 74.3 140 31.4
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 3.0e-11 73.9 212 29.7
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 3.0e-11 73.9 201 29.4
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 3.0e-11 73.9 162 30.2
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 3.9e-11 73.6 130 36.2
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 3.9e-11 73.6 122 36.1
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 6.6e-11 72.8 205 29.8
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 8.7e-11 72.4 129 33.3
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 8.7e-11 72.4 191 30.4
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 8.7e-11 72.4 205 29.3
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 1.5e-10 71.6 121 36.4
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 1.5e-10 71.6 129 33.3
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 1.5e-10 71.6 207 29.5
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.9e-10 71.2 168 29.2
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 1.9e-10 71.2 122 35.2
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 1.9e-10 71.2 121 36.4
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 2.5e-10 70.9 122 35.2
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 2.5e-10 70.9 126 34.1
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 3.3e-10 70.5 213 26.8
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 4.3e-10 70.1 122 36.1
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 4.3e-10 70.1 207 30.0
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 5.6e-10 69.7 191 29.8
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 5.6e-10 69.7 194 30.9
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 5.6e-10 69.7 121 36.4
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 5.6e-10 69.7 200 28.5
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 7.3e-10 69.3 200 29.0
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 7.3e-10 69.3 203 28.1
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 9.6e-10 68.9 121 35.5
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 9.6e-10 68.9 121 35.5
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 9.6e-10 68.9 94 41.5
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 1.6e-09 68.2 120 31.7
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 1.6e-09 68.2 131 32.8
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 2.1e-09 67.8 200 30.5
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 2.8e-09 67.4 191 28.8
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 2.8e-09 67.4 191 28.8
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 2.8e-09 67.4 205 28.3
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 3.6e-09 67.0 191 28.8
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 3.6e-09 67.0 191 28.8
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 3.6e-09 67.0 191 28.8
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 3.6e-09 67.0 190 26.8
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 3.6e-09 67.0 194 27.8
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 4.8e-09 66.6 186 30.1
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 6.2e-09 66.2 168 29.8
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 8.1e-09 65.9 159 34.0
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 8.1e-09 65.9 205 28.3
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 1.1e-08 65.5 128 33.6
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 1.1e-08 65.5 168 32.7
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 1.4e-08 65.1 208 28.4
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.8e-08 64.7 130 32.3
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 1.8e-08 64.7 173 30.1
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 1.8e-08 64.7 109 34.9
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 2.4e-08 64.3 201 27.9
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 2.4e-08 64.3 155 29.0
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 2.4e-08 64.3 212 29.7
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 3.1e-08 63.9 174 28.7
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 3.1e-08 63.9 149 30.9
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 3.1e-08 63.9 134 32.1
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 4.0e-08 63.5 212 29.7
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 5.3e-08 63.2 168 31.5
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 5.3e-08 63.2 128 33.6
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 5.3e-08 63.2 173 26.6
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 6.9e-08 62.8 168 28.6
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 6.9e-08 62.8 166 30.1
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 6.9e-08 62.8 174 30.5
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 6.9e-08 62.8 198 27.8
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 9.0e-08 62.4 112 37.5
Nitab4.5_0002611g0030 Nicotiana tabacum HOM05D004690 ORTHO05D005527 9.0e-08 62.4 161 28.6
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 1.5e-07 61.6 174 29.3
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 2.0e-07 61.2 169 29.0
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 2.0e-07 61.2 169 29.0
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 2.0e-07 61.2 169 29.0
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 2.6e-07 60.8 174 29.3
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 3.4e-07 60.5 224 26.3
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 3.4e-07 60.5 170 30.6
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 3.4e-07 60.5 170 30.6
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 3.4e-07 60.5 170 30.6
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 4.5e-07 60.1 171 28.7
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 4.5e-07 60.1 170 29.4
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 5.8e-07 59.7 101 35.6
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 5.8e-07 59.7 168 31.0
Glyma.04G154000 Glycine max HOM05D004690 ORTHO05D005527 5.8e-07 59.7 174 28.2
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 5.8e-07 59.7 103 35.0
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 5.8e-07 59.7 223 27.4
Rhsim01G0027300 Rhododendron simsii HOM05D004690 ORTHO05D005527 7.6e-07 59.3 170 27.6
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 9.9e-07 58.9 174 28.7
Peaxi162Scf00401g00330 Petunia axillaris HOM05D004690 ORTHO05D005527 1.3e-06 58.5 103 33.0
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 1.7e-06 58.2 224 25.4
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 1.7e-06 58.2 177 28.2
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 2.2e-06 57.8 103 32.0
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 2.9e-06 57.4 179 27.4
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 2.9e-06 57.4 170 30.0
vmacro16787 Vaccinium macrocarpon HOM05D004690 ORTHO05D005527 2.9e-06 57.4 179 28.5
CARHR238570 Cardamine hirsuta HOM05D004690 ORTHO05D005527 3.8e-06 57.0 183 27.3
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 3.8e-06 57.0 126 34.1
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 3.8e-06 57.0 87 28.7
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 4.9e-06 56.6 92 32.6
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 6.4e-06 56.2 169 28.4
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 6.4e-06 56.2 181 28.2
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 6.4e-06 56.2 179 28.5


User provided reference genes

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