Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 2.6e-48 195.7 147 100.0
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 5.9e-13 78.2 108 72.2
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 1.3e-12 77.0 108 72.2
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 1.7e-12 76.6 108 73.1
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 1.7e-12 76.6 138 63.0
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 5.0e-12 75.1 108 70.4
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 8.6e-12 74.3 44 77.3
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 1.5e-11 73.6 108 74.1
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 1.5e-11 73.6 108 74.1
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 1.5e-11 73.6 44 75.0
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 1.5e-11 73.6 44 75.0
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 1.9e-11 73.2 108 68.5
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 1.9e-11 73.2 44 75.0
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 1.9e-11 73.2 44 77.3
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 2.5e-11 72.8 44 77.3
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 2.5e-11 72.8 108 71.3
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 3.3e-11 72.4 44 77.3
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 3.3e-11 72.4 44 77.3
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 3.3e-11 72.4 44 77.3
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 3.3e-11 72.4 44 77.3
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 4.3e-11 72.0 43 79.1
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 4.3e-11 72.0 43 79.1
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 4.3e-11 72.0 43 79.1
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 4.3e-11 72.0 43 79.1
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 4.3e-11 72.0 43 79.1
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 4.3e-11 72.0 43 79.1
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 4.3e-11 72.0 43 79.1
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 4.3e-11 72.0 43 79.1
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 4.3e-11 72.0 43 79.1
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 4.3e-11 72.0 44 75.0
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 4.3e-11 72.0 44 75.0
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 5.6e-11 71.6 44 77.3
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 5.6e-11 71.6 43 79.1
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 5.6e-11 71.6 44 72.7
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 9.5e-11 70.9 43 74.4
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 1.2e-10 70.5 43 76.7
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 1.2e-10 70.5 44 75.0
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 1.2e-10 70.5 44 75.0
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 1.2e-10 70.5 44 75.0
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 1.6e-10 70.1 43 76.7
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 1.6e-10 70.1 44 75.0
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 1.6e-10 70.1 44 75.0
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 1.6e-10 70.1 44 75.0
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 1.6e-10 70.1 44 72.7
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 2.1e-10 69.7 44 70.5
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 2.1e-10 69.7 66 56.1
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 2.8e-10 69.3 108 73.1
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 2.8e-10 69.3 43 72.1
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 3.6e-10 68.9 44 72.7
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 3.6e-10 68.9 44 68.2
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 3.6e-10 68.9 44 75.0
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 4.7e-10 68.6 44 72.7
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 4.7e-10 68.6 44 70.5
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 4.7e-10 68.6 44 72.7
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 4.7e-10 68.6 44 72.7
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 6.1e-10 68.2 44 72.7
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 6.1e-10 68.2 44 70.5
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 6.1e-10 68.2 43 74.4
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 6.1e-10 68.2 43 74.4
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 6.1e-10 68.2 66 59.1
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 8.0e-10 67.8 44 70.5
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 8.0e-10 67.8 44 72.7
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 8.0e-10 67.8 44 72.7
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 8.0e-10 67.8 44 72.7
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 8.0e-10 67.8 43 69.8
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 8.0e-10 67.8 44 70.5
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 8.0e-10 67.8 44 70.5
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 8.0e-10 67.8 44 70.5
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 8.0e-10 67.8 44 70.5
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 1.0e-09 67.4 44 72.7
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 1.0e-09 67.4 66 56.1
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 1.0e-09 67.4 44 70.5
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 1.0e-09 67.4 44 72.7
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 1.0e-09 67.4 66 56.1
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 1.0e-09 67.4 66 57.6
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 1.4e-09 67.0 66 56.1
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 1.4e-09 67.0 66 56.1
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.4e-09 67.0 130 53.1
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.4e-09 67.0 130 53.1
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 1.4e-09 67.0 66 56.1
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 1.4e-09 67.0 44 70.5
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 1.4e-09 67.0 44 68.2
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 1.4e-09 67.0 66 56.1
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 1.8e-09 66.6 44 68.2
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 1.8e-09 66.6 44 70.5
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.8e-09 66.6 125 35.2
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 1.8e-09 66.6 66 56.1
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 1.8e-09 66.6 44 70.5
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 1.8e-09 66.6 66 54.5
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 3.1e-09 65.9 65 56.9
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 4.0e-09 65.5 42 71.4
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 4.0e-09 65.5 42 71.4
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 5.2e-09 65.1 96 75.0
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 8.9e-09 64.3 44 68.2
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 1.2e-08 63.9 66 54.5
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.2e-08 63.9 66 53.0
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 1.3e-07 60.5 106 36.8
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 1.3e-07 60.5 75 50.7
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 1.7e-07 60.1 41 63.4


User provided reference genes

Program Settings