Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G583 Micromonas commoda HOM05D002920 ORTHO05D003118 0.0e+00 7660.1 4195 100.0
SMO116G0207 Selaginella moellendorffii HOM05D002920 ORTHO05D003118 6.6e-32 146.0 830 25.9
Medtr5g066650 Medicago truncatula HOM05D002920 ORTHO05D003118 1.7e-27 131.3 854 23.3
Solyc12g088010.2 Solanum lycopersicum HOM05D002920 ORTHO05D003118 8.4e-27 129.0 855 22.2
Sopen12g030040 Solanum pennellii HOM05D002920 ORTHO05D003118 4.2e-26 126.7 865 22.5
TWI12G0386 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 5.4e-26 126.3 878 22.7
TWI56G0278 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 1.2e-25 125.2 869 23.5
C09p23100 Brassica napus HOM05D002920 ORTHO05D003118 4.6e-25 123.2 830 23.1
BolC9t55228H Brassica oleracea HOM05D002920 ORTHO05D003118 4.6e-25 123.2 830 23.1
Mapoly0099s0021 Marchantia polymorpha HOM05D002920 ORTHO05D003118 1.7e-24 121.3 808 21.9
BraA09t37476Z Brassica rapa HOM05D002920 ORTHO05D003118 2.3e-24 120.9 830 22.8
Peaxi162Scf00160g01034 Petunia axillaris HOM05D002920 ORTHO05D003118 2.3e-24 120.9 847 23.0
Glyma.02G215800 Glycine max HOM05D002920 ORTHO05D003118 3.0e-24 120.6 833 22.3
BcaC04g22122 Brassica carinata HOM05D002920 ORTHO05D003118 5.1e-24 119.8 825 22.5
CAN.G1104.5 Capsicum annuum HOM05D002920 ORTHO05D003118 5.1e-24 119.8 898 21.8
TPR.G30876 Trifolium pratense HOM05D002920 ORTHO05D003118 8.7e-24 119.0 859 21.8
ECA247G2620 Erigeron canadensis HOM05D002920 ORTHO05D003118 1.1e-23 118.6 885 23.5
Nn7g36727 Nelumbo nucifera HOM05D002920 ORTHO05D003118 3.3e-23 117.1 900 21.7
TPR.G26343 Trifolium pratense HOM05D002920 ORTHO05D003118 4.3e-23 116.7 859 22.8
Ca_16019_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 7.3e-23 115.9 858 21.8
ECA232G1296 Erigeron canadensis HOM05D002920 ORTHO05D003118 7.3e-23 115.9 841 23.8
Pp3c12_12980 Physcomitrium patens HOM05D002920 ORTHO05D003118 7.3e-23 115.9 848 23.5
Sed0001865 Sechium edule HOM05D002920 ORTHO05D003118 1.3e-22 115.2 842 22.4
Lj1g0004035 Lotus japonicus HOM05D002920 ORTHO05D003118 1.6e-22 114.8 848 21.8
Sed0007128 Sechium edule HOM05D002920 ORTHO05D003118 2.1e-22 114.4 884 21.9
Nitab4.5_0000354g0140 Nicotiana tabacum HOM05D002920 ORTHO05D003118 2.8e-22 114.0 895 22.1
PSO170G4177 Papaver somniferum HOM05D002920 ORTHO05D003118 2.8e-22 114.0 836 20.2
VMungo1309G0011 Vigna mungo HOM05D002920 ORTHO05D003118 3.6e-22 113.6 839 22.5
Zm00001eb394580 Zea mays HOM05D002920 ORTHO05D003118 3.6e-22 113.6 872 21.7
MELO3C011076.2 Cucumis melo HOM05D002920 ORTHO05D003118 4.8e-22 113.2 841 22.1
Glyma.06G098300 Glycine max HOM05D002920 ORTHO05D003118 6.2e-22 112.8 846 22.7
RcHm_v2.0_Chr7g0235041 Rosa chinensis HOM05D002920 ORTHO05D003118 6.2e-22 112.8 844 22.6
CDE07G0298 Ceratophyllum demersum HOM05D002920 ORTHO05D003118 1.4e-21 111.7 851 21.5
CsaV3_2G030160 Cucumis sativus L. HOM05D002920 ORTHO05D003118 1.4e-21 111.7 838 22.0
LjContig00408g0017356 Lotus japonicus HOM05D002920 ORTHO05D003118 1.4e-21 111.7 874 21.3
Medtr3g099880 Medicago truncatula HOM05D002920 ORTHO05D003118 1.4e-21 111.7 885 21.4
Sp2g05360 Schrenkiella parvula HOM05D002920 ORTHO05D003118 1.4e-21 111.7 823 21.9
Psat5g047200 Pisum sativum HOM05D002920 ORTHO05D003118 2.4e-21 110.9 872 21.8
Sabra02G0087200 Salix brachista HOM05D002920 ORTHO05D003118 2.4e-21 110.9 844 22.9
Rhsim07G0212900 Rhododendron simsii HOM05D002920 ORTHO05D003118 3.1e-21 110.5 867 21.8
Phvul.008G183000 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 4.0e-21 110.2 852 21.8
Sc26g0003000 Simmondsia chinensis HOM05D002920 ORTHO05D003118 5.3e-21 109.8 890 22.7
TAR625G0757 Trochodendron aralioides HOM05D002920 ORTHO05D003118 5.3e-21 109.8 877 21.8
Nitab4.5_0000131g0060 Nicotiana tabacum HOM05D002920 ORTHO05D003118 6.9e-21 109.4 846 22.0
ATR0767G155 Amborella trichopoda HOM05D002920 ORTHO05D003118 9.0e-21 109.0 847 22.1
CAN.G193.3 Capsicum annuum HOM05D002920 ORTHO05D003118 9.0e-21 109.0 838 22.1
Glyma.04G096600 Glycine max HOM05D002920 ORTHO05D003118 9.0e-21 109.0 821 22.8
Psat2g064120 Pisum sativum HOM05D002920 ORTHO05D003118 1.5e-20 108.2 807 22.8
Ciclev10000004m.g Citrus clementina HOM05D002920 ORTHO05D003118 2.0e-20 107.8 851 21.7
Potri.002G110700 Populus trichocarpa HOM05D002920 ORTHO05D003118 2.6e-20 107.5 840 22.4
BraA04t17332Z Brassica rapa HOM05D002920 ORTHO05D003118 5.8e-20 106.3 879 22.4
Solyc04g076540.4 Solanum lycopersicum HOM05D002920 ORTHO05D003118 5.8e-20 106.3 883 22.3
FAN04G1888 Fragaria x ananassa HOM05D002920 ORTHO05D003118 7.6e-20 105.9 853 22.2
Gohir.D05G221500 Gossypium hirsutum HOM05D002920 ORTHO05D003118 7.6e-20 105.9 855 21.2
Lsat_1_v5_gn_7_70960 Lactuca sativa HOM05D002920 ORTHO05D003118 7.6e-20 105.9 840 21.9
Lsat_1_v5_gn_9_80681 Lactuca sativa HOM05D002920 ORTHO05D003118 7.6e-20 105.9 944 21.5
Nn1g05621 Nelumbo nucifera HOM05D002920 ORTHO05D003118 7.6e-20 105.9 856 21.3
Nitab4.5_0005065g0010 Nicotiana tabacum HOM05D002920 ORTHO05D003118 7.6e-20 105.9 948 21.3
TAR381G0245 Trochodendron aralioides HOM05D002920 ORTHO05D003118 7.6e-20 105.9 849 21.0
A04p17040 Brassica napus HOM05D002920 ORTHO05D003118 9.9e-20 105.5 877 22.1
Gorai.009G228700 Gossypium raimondii HOM05D002920 ORTHO05D003118 9.9e-20 105.5 840 21.0
Manes.05G189400 Manihot esculenta HOM05D002920 ORTHO05D003118 9.9e-20 105.5 867 22.0
Phvul.009G035200 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 9.9e-20 105.5 875 21.3
Cc10_g08510 Coffea canephora HOM05D002920 ORTHO05D003118 1.3e-19 105.1 829 21.7
arahy.Tifrunner.gnm1.ann1.3DHU48 Arachis hypogaea HOM05D002920 ORTHO05D003118 1.7e-19 104.8 842 21.6
MSTRG.24431 Avicennia marina HOM05D002920 ORTHO05D003118 1.7e-19 104.8 832 21.3
Cfa013811 Carpinus fangiana HOM05D002920 ORTHO05D003118 1.7e-19 104.8 833 21.8
CARHR053740 Cardamine hirsuta HOM05D002920 ORTHO05D003118 2.2e-19 104.4 830 21.9
HanXRQChr02g0046051 Helianthus annuus HOM05D002920 ORTHO05D003118 2.2e-19 104.4 856 22.3
GSVIVG01009199001 Vitis vinifera HOM05D002920 ORTHO05D003118 2.2e-19 104.4 838 21.4
Aa31LG2G10870 Aethionema arabicum HOM05D002920 ORTHO05D003118 2.9e-19 104.0 845 22.5
Aqoxy5G01357 Aquilegia oxysepala HOM05D002920 ORTHO05D003118 2.9e-19 104.0 862 21.1
Thhalv10000004m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 2.9e-19 104.0 866 22.1
Eucgr.F00435 Eucalyptus grandis HOM05D002920 ORTHO05D003118 3.8e-19 103.6 849 21.7
Sopen04g030270 Solanum pennellii HOM05D002920 ORTHO05D003118 3.8e-19 103.6 883 22.2
AL8G23560 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 4.9e-19 103.2 879 21.5
Prupe.1G535700 Prunus persica HOM05D002920 ORTHO05D003118 4.9e-19 103.2 845 21.9
ClCG08G011580 Citrullus lanatus HOM05D002920 ORTHO05D003118 6.4e-19 102.8 865 22.3
AL2G18260 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 8.4e-19 102.4 838 21.7
FvH4_5g34390 Fragaria vesca HOM05D002920 ORTHO05D003118 8.4e-19 102.4 850 21.8
Gohir.A05G264400 Gossypium hirsutum HOM05D002920 ORTHO05D003118 8.4e-19 102.4 882 20.4
Lj4C86G6 Lonicera japonica HOM05D002920 ORTHO05D003118 8.4e-19 102.4 843 21.6
Actinidia19621 Actinidia chinensis HOM05D002920 ORTHO05D003118 1.4e-18 101.7 856 21.1
AT1G58250 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 1.4e-18 101.7 832 21.6
CANSAT11G0038 Cannabis sativa HOM05D002920 ORTHO05D003118 1.4e-18 101.7 866 22.5
Dinv44873 Davidia involucrata HOM05D002920 ORTHO05D003118 1.9e-18 101.3 850 22.1
Migut.N02861 Erythranthe guttata HOM05D002920 ORTHO05D003118 1.9e-18 101.3 830 21.1
Duzib116G0095 Durio zibethinus HOM05D002920 ORTHO05D003118 2.4e-18 100.9 846 21.9
Lalb_Chr10g0102771 Lupinus albus HOM05D002920 ORTHO05D003118 2.4e-18 100.9 880 22.3
AUR62014366 Chenopodium quinoa HOM05D002920 ORTHO05D003118 3.2e-18 100.5 850 21.1
Carub.0002s0632 Capsella rubella HOM05D002920 ORTHO05D003118 4.2e-18 100.1 827 21.8
Thhalv10023209m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 4.2e-18 100.1 834 21.5
Manes.18G056500 Manihot esculenta HOM05D002920 ORTHO05D003118 4.2e-18 100.1 951 21.2
THA.LOC104823692 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 4.2e-18 100.1 852 22.2
COL.COLO4_35270 Corchorus olitorius HOM05D002920 ORTHO05D003118 5.4e-18 99.8 860 22.1
Atru.chr13.989 Acer truncatum HOM05D002920 ORTHO05D003118 7.1e-18 99.4 833 22.3
PGR042G2097 Punica granatum HOM05D002920 ORTHO05D003118 7.1e-18 99.4 851 22.1
BcaB04g20194 Brassica carinata HOM05D002920 ORTHO05D003118 9.3e-18 99.0 835 21.7
Hund26821 Selenicereus undatus HOM05D002920 ORTHO05D003118 9.3e-18 99.0 833 22.9
unitig_578.g16182 Utricularia gibba HOM05D002920 ORTHO05D003118 9.3e-18 99.0 891 21.9
TPR.G6371 Trifolium pratense HOM05D002920 ORTHO05D003118 1.2e-17 98.6 893 21.3
MD08G1201800 Malus domestica HOM05D002920 ORTHO05D003118 1.6e-17 98.2 975 23.0
Peaxi162Scf01112g00017 Petunia axillaris HOM05D002920 ORTHO05D003118 2.1e-17 97.8 1073 22.4
THA.LOC104817630 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 2.1e-17 97.8 821 21.1
Aa31LG4G11400 Aethionema arabicum HOM05D002920 ORTHO05D003118 2.7e-17 97.4 855 21.1
Ah.05g171450 Amaranthus hybridus HOM05D002920 ORTHO05D003118 3.5e-17 97.1 930 21.4
BcaC09g49498 Brassica carinata HOM05D002920 ORTHO05D003118 3.5e-17 97.1 826 21.2
C01p35900 Brassica napus HOM05D002920 ORTHO05D003118 3.5e-17 97.1 826 21.2
BolC1t03549H Brassica oleracea HOM05D002920 ORTHO05D003118 3.5e-17 97.1 826 21.2
Carub.0008s0955 Capsella rubella HOM05D002920 ORTHO05D003118 3.5e-17 97.1 874 21.7
CARHR259160 Cardamine hirsuta HOM05D002920 ORTHO05D003118 3.5e-17 97.1 897 21.7
Gohir.D05G266900 Gossypium hirsutum HOM05D002920 ORTHO05D003118 3.5e-17 97.1 940 20.4
A01p28350 Brassica napus HOM05D002920 ORTHO05D003118 4.6e-17 96.7 832 21.4
CiPaw.07G163600 Carya illinoinensis HOM05D002920 ORTHO05D003118 4.6e-17 96.7 828 20.9
Lalb_Chr08g0242591 Lupinus albus HOM05D002920 ORTHO05D003118 4.6e-17 96.7 842 23.0
BolC4t26752H Brassica oleracea HOM05D002920 ORTHO05D003118 1.3e-16 95.1 850 22.2
MD15G1388100 Malus domestica HOM05D002920 ORTHO05D003118 1.3e-16 95.1 964 22.4
C04p51730 Brassica napus HOM05D002920 ORTHO05D003118 2.3e-16 94.4 848 21.8
Thecc.08G073100 Theobroma cacao HOM05D002920 ORTHO05D003118 3.9e-16 93.6 881 22.1
Sp1g33860 Schrenkiella parvula HOM05D002920 ORTHO05D003118 5.1e-16 93.2 826 21.5
AT5G49680 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 6.6e-16 92.8 882 21.1
Gorai.009G279000 Gossypium raimondii HOM05D002920 ORTHO05D003118 6.6e-16 92.8 979 20.5
Sp4g01560 Schrenkiella parvula HOM05D002920 ORTHO05D003118 8.7e-16 92.4 882 21.5
VMungo0647G0360 Vigna mungo HOM05D002920 ORTHO05D003118 1.1e-15 92.0 814 21.9
CARHR053650 Cardamine hirsuta HOM05D002920 ORTHO05D003118 1.9e-15 91.3 834 21.0
HPP92_018503 Vanilla planifolia HOM05D002920 ORTHO05D003118 2.5e-15 90.9 833 20.4
Rhsim06G0070200 Rhododendron simsii HOM05D002920 ORTHO05D003118 3.3e-15 90.5 847 21.1
EL10Ac1g00492 Beta vulgaris HOM05D002920 ORTHO05D003118 4.3e-15 90.1 926 20.8
Duzib041G0528 Durio zibethinus HOM05D002920 ORTHO05D003118 4.3e-15 90.1 877 21.2
Gohir.A05G218800 Gossypium hirsutum HOM05D002920 ORTHO05D003118 4.3e-15 90.1 895 21.2
arahy.Tifrunner.gnm1.ann1.WZJ2AS Arachis hypogaea HOM05D002920 ORTHO05D003118 1.6e-14 88.2 844 21.1
FAN18G2688 Fragaria x ananassa HOM05D002920 ORTHO05D003118 1.6e-14 88.2 892 21.4
FAN13G0555 Fragaria x ananassa HOM05D002920 ORTHO05D003118 8.1e-14 85.9 922 21.3
Zm00001eb051870 Zea mays HOM05D002920 ORTHO05D003118 1.5e-12 81.6 820 21.2
HanXRQChr14g0447811 Helianthus annuus HOM05D002920 ORTHO05D003118 2.0e-12 81.3 933 21.1
Cre14.g608050 Chlamydomonas reinhardtii HOM05D067863 ORTHO05D044128 2.6e-12 80.9 237 32.5
AagrBONN_evm.TU.Sc2ySwM_344.1562 Anthoceros agrestis HOM05D002920 ORTHO05D003118 3.4e-12 80.5 839 21.9
Os03g0353600 Oryza sativa ssp. japonica HOM05D002920 ORTHO05D003118 3.4e-12 80.5 283 29.3
CBR_g40338 Chara braunii HOM05D002920 ORTHO05D003118 4.5e-12 80.1 268 30.2
BraA01t02963Z Brassica rapa HOM05D002920 ORTHO05D003118 5.8e-12 79.7 799 21.2
Cpa.g.sc21.36 Carica papaya HOM05D002920 ORTHO05D003118 7.6e-12 79.3 830 22.3
CSS0008058 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 9.9e-12 79.0 806 21.0
DCAR_032088 Daucus carota HOM05D002920 ORTHO05D003118 2.2e-11 77.8 851 22.4
PSO210G5781 Papaver somniferum HOM05D002920 ORTHO05D003118 2.2e-11 77.8 617 19.0
HPP92_024863 Vanilla planifolia HOM05D002920 ORTHO05D003118 2.9e-11 77.4 268 28.7
arahy.Tifrunner.gnm1.ann1.LW385E Arachis hypogaea HOM05D002920 ORTHO05D003118 3.8e-11 77.0 311 27.7
MBI16_g06013_MAGBIO Magnolia biondii HOM05D002920 ORTHO05D003118 3.8e-11 77.0 285 28.1
arahy.Tifrunner.gnm1.ann1.GN9VME Arachis hypogaea HOM05D002920 ORTHO05D003118 6.4e-11 76.3 312 27.9
CSS0043684 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 6.4e-11 76.3 867 21.3
PGSC0003DMG400002051 Solanum tuberosum HOM05D002920 ORTHO05D003118 7.1e-10 72.8 482 19.1
PSO094G0001 Papaver somniferum HOM05D002920 ORTHO05D003118 1.6e-09 71.6 88 36.4
Hund17268 Selenicereus undatus HOM05D002920 ORTHO05D003118 3.5e-09 70.5 282 27.3
SEGI_15502 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 6.0e-09 69.7 66 39.4
SalBow2G2368 Salvia bowleyana HOM05D002920 ORTHO05D003118 7.9e-09 69.3 521 21.7
BraA08t32630Z Brassica rapa HOM05D002920 ORTHO05D003118 1.3e-08 68.6 841 20.2
SHI00996 Sapria himalayana HOM05D002920 ORTHO05D000014 1.3e-08 68.6 274 27.4
SEGI_17287 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 1.3e-08 68.6 286 26.6
Nitab4.5_0005345g0040 Nicotiana tabacum HOM05D002920 ORTHO05D003118 3.0e-08 67.4 441 24.3
vmacro21352 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 3.0e-08 67.4 65 44.6
AUR62019108 Chenopodium quinoa HOM05D002920 ORTHO05D003118 8.7e-08 65.9 191 30.9
Oeu038176.1 Olea europaea HOM05D002920 ORTHO05D003118 8.7e-08 65.9 74 39.2
Haze_22482 Corylus avellana HOM05D002920 ORTHO05D003118 1.5e-07 65.1 168 34.5
QL09p018218 Quercus lobata HOM05D002920 ORTHO05D003118 1.9e-07 64.7 444 23.9
Haze_22479 Corylus avellana HOM05D002920 ORTHO05D003118 2.5e-07 64.3 84 33.3
FAN08G1437 Fragaria x ananassa HOM05D002920 ORTHO05D003118 3.3e-07 63.9 76 35.5
MD08G1208200 Malus domestica HOM05D002920 ORTHO05D003118 5.6e-07 63.2 167 31.7
DCAR_024958 Daucus carota HOM05D002920 ORTHO05D003118 7.4e-07 62.8 440 23.9
Hund17270 Selenicereus undatus HOM05D002920 ORTHO05D003118 9.6e-07 62.4 69 40.6
SGA_v2.0_scaffold235G43665 Striga asiatica HOM05D002920 ORTHO05D003118 2.1e-06 61.2 489 22.3
Lsat_1_v5_gn_1_1961 Lactuca sativa HOM05D002920 ORTHO05D003118 3.7e-06 60.5 1061 23.2
Rhsim06G0070400 Rhododendron simsii HOM05D002920 ORTHO05D009497 4.8e-06 60.1 72 38.9
BcaC07g37279 Brassica carinata HOM05D002920 ORTHO05D003118 8.1e-06 59.3 206 31.6
A08p06260 Brassica napus HOM05D002920 ORTHO05D003118 8.1e-06 59.3 201 30.3
C08p07060 Brassica napus HOM05D002920 ORTHO05D003118 8.1e-06 59.3 206 31.6
BolC8t47550H Brassica oleracea HOM05D002920 ORTHO05D003118 8.1e-06 59.3 206 31.6
PRCOL_00002452 Prasinoderma coloniale HOM05D002920 ORTHO05D003118 8.1e-06 59.3 113 28.3


User provided reference genes

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