Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G576 Micromonas commoda HOM05D057477 ORTHO05D049155 1.1e-245 852.8 413 100.0
PRCOL_00004045 Prasinoderma coloniale HOM05D057477 ORTHO05D049155 2.7e-119 433.0 432 50.7
HanXRQChr05g0152081 Helianthus annuus HOM05D001840 ORTHO05D002076 5.9e-10 69.7 98 35.7
Os09g0338500 Oryza sativa ssp. japonica HOM05D001840 ORTHO05D002076 5.9e-10 69.7 100 34.0
PGSC0003DMG400029934 Solanum tuberosum HOM05D001840 ORTHO05D002076 1.0e-09 68.9 128 32.8
Lsat_1_v5_gn_6_13521 Lactuca sativa HOM05D001840 ORTHO05D002076 1.3e-09 68.6 98 35.7
Solyc08g063090.2 Solanum lycopersicum HOM05D001840 ORTHO05D002076 1.3e-09 68.6 146 32.2
Hma1.2p1_0544F.1_g175780 Hydrangea macrophylla HOM05D001840 ORTHO05D002076 2.3e-09 67.8 98 35.7
CDE03G0154 Ceratophyllum demersum HOM05D001840 ORTHO05D002076 2.9e-09 67.4 103 32.0
CDE04G3170 Ceratophyllum demersum HOM05D001840 ORTHO05D002076 2.9e-09 67.4 102 32.4
ECA233G4814 Erigeron canadensis HOM05D001840 ORTHO05D002076 5.0e-09 66.6 98 34.7
THA.LOC104803726 Tarenaya hassleriana HOM05D001840 ORTHO05D002076 5.0e-09 66.6 109 31.2
ATR0584G196 Amborella trichopoda HOM05D001840 ORTHO05D002076 6.6e-09 66.2 98 31.6
MSTRG.25951 Avicennia marina HOM05D001840 ORTHO05D002076 1.1e-08 65.5 110 31.8
unitig_32.g11470 Utricularia gibba HOM05D001840 ORTHO05D002076 1.1e-08 65.5 91 37.4
Atru.chr7.1086 Acer truncatum HOM05D001840 ORTHO05D002076 1.5e-08 65.1 98 33.7
MBI06_g33550_MAGBIO Magnolia biondii HOM05D001840 ORTHO05D002076 1.5e-08 65.1 128 29.7
Mapoly0184s0017 Marchantia polymorpha HOM05D001840 ORTHO05D021343 1.5e-08 65.1 106 37.7
PSO063G1829 Papaver somniferum HOM05D001840 ORTHO05D002076 1.5e-08 65.1 98 32.7
PSO170G2668 Papaver somniferum HOM05D001840 ORTHO05D002076 1.5e-08 65.1 98 32.7
PSO276G0001 Papaver somniferum HOM05D001840 ORTHO05D002076 1.5e-08 65.1 98 32.7
Psat0s4497g0040 Pisum sativum HOM05D001840 ORTHO05D002076 1.5e-08 65.1 98 30.6
PGR031G1723 Punica granatum HOM05D001840 ORTHO05D002076 1.5e-08 65.1 100 32.0
SHI13352 Sapria himalayana HOM05D001840 ORTHO05D002076 1.5e-08 65.1 128 28.9
Sc09g0009860 Simmondsia chinensis HOM05D001840 ORTHO05D002076 1.5e-08 65.1 130 30.0
Mapoly0068s0037 Marchantia polymorpha HOM05D001840 ORTHO05D002076 1.9e-08 64.7 108 31.5
Sopen08g018670 Solanum pennellii HOM05D001840 ORTHO05D002076 1.9e-08 64.7 146 31.5
COL.COLO4_21068 Corchorus olitorius HOM05D001840 ORTHO05D002076 2.5e-08 64.3 98 31.6
Eucgr.C00655 Eucalyptus grandis HOM05D001840 ORTHO05D002076 2.5e-08 64.3 100 31.0
Oeu009350.1 Olea europaea HOM05D001840 ORTHO05D002076 2.5e-08 64.3 100 31.0
Ciclev10010195m.g Citrus clementina HOM05D001840 ORTHO05D002076 3.3e-08 63.9 100 33.0
Oeu003987.1 Olea europaea HOM05D001840 ORTHO05D002076 3.3e-08 63.9 100 32.0
PSO384G1171 Papaver somniferum HOM05D001840 ORTHO05D002076 3.3e-08 63.9 130 31.5
SalBow4G0846 Salvia bowleyana HOM05D001840 ORTHO05D002076 3.3e-08 63.9 146 30.8
unitig_748.g7526 Utricularia gibba HOM05D001840 ORTHO05D002076 3.3e-08 63.9 91 34.1
Migut.A00130 Erythranthe guttata HOM05D001840 ORTHO05D002076 4.3e-08 63.5 128 29.7
Manes.16G081200 Manihot esculenta HOM05D001840 ORTHO05D002076 4.3e-08 63.5 97 32.0
Prupe.2G179200 Prunus persica HOM05D001840 ORTHO05D002076 4.3e-08 63.5 97 29.9
CAN.G626.2 Capsicum annuum HOM05D001840 ORTHO05D002076 5.6e-08 63.2 100 34.0
Pp3c25_1720 Physcomitrium patens HOM05D001840 ORTHO05D002076 5.6e-08 63.2 98 33.7
SGA_v2.0_scaffold20G09221 Striga asiatica HOM05D001840 ORTHO05D002076 5.6e-08 63.2 100 32.0
TPR.G13117 Trifolium pratense HOM05D001840 ORTHO05D002076 5.6e-08 63.2 104 29.8
CAN.G517.12 Capsicum annuum HOM05D001840 ORTHO05D002076 9.5e-08 62.4 100 34.0
Medtr1g016070 Medicago truncatula HOM05D001840 ORTHO05D002076 9.5e-08 62.4 98 31.6
PSO135G0983 Papaver somniferum HOM05D001840 ORTHO05D002076 9.5e-08 62.4 100 33.0
TAR629G0345 Trochodendron aralioides HOM05D001840 ORTHO05D002076 9.5e-08 62.4 100 32.0
Atru.chr7.1087 Acer truncatum HOM05D001840 ORTHO05D002076 1.2e-07 62.0 122 28.7
Aa31LG10G15420 Aethionema arabicum HOM05D001840 ORTHO05D002076 1.2e-07 62.0 128 27.3
Aqoxy5G04054 Aquilegia oxysepala HOM05D001840 ORTHO05D002076 1.2e-07 62.0 98 30.6
Ca_13150_v3 Cicer arietinum L. HOM05D001840 ORTHO05D002076 1.2e-07 62.0 104 31.7
Ca_13159_v3 Cicer arietinum L. HOM05D001840 ORTHO05D002076 1.2e-07 62.0 104 31.7
Nitab4.5_0001367g0070 Nicotiana tabacum HOM05D001840 ORTHO05D002076 1.2e-07 62.0 104 31.7
Phvul.001G036200 Phaseolus vulgaris HOM05D001840 ORTHO05D002076 1.2e-07 62.0 116 31.9
EL10Ac1g00343 Beta vulgaris HOM05D001840 ORTHO05D002076 1.6e-07 61.6 128 26.6
Manes.03G048600 Manihot esculenta HOM05D001840 ORTHO05D002076 1.6e-07 61.6 102 30.4
Rhsim07G0009200 Rhododendron simsii HOM05D001840 ORTHO05D002076 1.6e-07 61.6 121 27.3
Zm00001eb162340 Zea mays HOM05D001840 ORTHO05D002076 1.6e-07 61.6 99 30.3
CSS0035293 Camellia sinensis var. sinensis HOM05D001840 ORTHO05D002076 2.1e-07 61.2 79 36.7
AUR62004421 Chenopodium quinoa HOM05D001840 ORTHO05D002076 2.1e-07 61.2 128 27.3
AUR62022627 Chenopodium quinoa HOM05D001840 ORTHO05D002076 2.1e-07 61.2 128 27.3
Nitab4.5_0002829g0040 Nicotiana tabacum HOM05D001840 ORTHO05D002076 2.1e-07 61.2 104 31.7
Peaxi162Scf00327g00101 Petunia axillaris HOM05D001840 ORTHO05D002076 2.1e-07 61.2 128 29.7
Cfa017963 Carpinus fangiana HOM05D001840 ORTHO05D002076 2.8e-07 60.8 97 32.0
TWI59G1256 Tripterygium wilfordii HOM05D001840 ORTHO05D002076 2.8e-07 60.8 98 29.6
Zm00001eb098340 Zea mays HOM05D001840 ORTHO05D002076 2.8e-07 60.8 97 32.0
CiPaw.15G038200 Carya illinoinensis HOM05D001840 ORTHO05D002076 3.6e-07 60.5 98 32.7
Haze_18174 Corylus avellana HOM05D001840 ORTHO05D002076 3.6e-07 60.5 97 32.0
Duzib168G2067 Durio zibethinus HOM05D001840 ORTHO05D002076 3.6e-07 60.5 100 31.0
MD01G1072900 Malus domestica HOM05D001840 ORTHO05D002076 3.6e-07 60.5 91 29.7
Peaxi162Scf00327g00116 Petunia axillaris HOM05D001840 ORTHO05D002076 3.6e-07 60.5 101 31.7
SalBow3G0431 Salvia bowleyana HOM05D001840 ORTHO05D002076 3.6e-07 60.5 95 31.6
Zm00001eb310330 Zea mays HOM05D001840 ORTHO05D002076 3.6e-07 60.5 97 30.9
EL10Ac2g03862 Beta vulgaris HOM05D001840 ORTHO05D002076 4.7e-07 60.1 107 33.6
Duzib150G0292 Durio zibethinus HOM05D001840 ORTHO05D002076 4.7e-07 60.1 100 31.0
Duzib168G2347 Durio zibethinus HOM05D001840 ORTHO05D002076 4.7e-07 60.1 100 31.0
FAN03G1847 Fragaria x ananassa HOM05D001840 ORTHO05D002076 4.7e-07 60.1 98 28.6
Lalb_Chr23g0267781 Lupinus albus HOM05D001840 ORTHO05D002076 4.7e-07 60.1 104 31.7
MD01G1073000 Malus domestica HOM05D001840 ORTHO05D002076 4.7e-07 60.1 98 27.6
SEGI_23104 Sequoiadendron giganteum HOM05D001840 ORTHO05D002076 4.7e-07 60.1 102 28.4
GSVIVG01035396001 Vitis vinifera HOM05D001840 ORTHO05D002076 4.7e-07 60.1 100 32.0
Cc08_g10680 Coffea canephora HOM05D001840 ORTHO05D002076 6.1e-07 59.7 100 31.0
Glyma.14G095400 Glycine max HOM05D001840 ORTHO05D002076 6.1e-07 59.7 101 33.7
Glyma.17G228400 Glycine max HOM05D001840 ORTHO05D002076 6.1e-07 59.7 101 33.7
Lj7A269T16 Lonicera japonica HOM05D001840 ORTHO05D002076 6.1e-07 59.7 98 34.7
Lj7P268T11 Lonicera japonica HOM05D001840 ORTHO05D002076 6.1e-07 59.7 98 34.7
Nn7g37320 Nelumbo nucifera HOM05D001840 ORTHO05D002076 6.1e-07 59.7 98 29.6
Potri.006G228200 Populus trichocarpa HOM05D001840 ORTHO05D002076 6.1e-07 59.7 104 30.8
Prupe.2G179400 Prunus persica HOM05D001840 ORTHO05D002076 6.1e-07 59.7 98 29.6
VMungo0647G1118 Vigna mungo HOM05D001840 ORTHO05D002076 6.1e-07 59.7 116 31.9
Cpa.g.sc7.179 Carica papaya HOM05D001840 ORTHO05D002076 8.0e-07 59.3 100 30.0
Duzib187G1352 Durio zibethinus HOM05D001840 ORTHO05D002076 8.0e-07 59.3 187 28.3
FAN15G0181 Fragaria x ananassa HOM05D001840 ORTHO05D002076 8.0e-07 59.3 134 29.9
MD07G1129700 Malus domestica HOM05D001840 ORTHO05D002076 8.0e-07 59.3 128 26.6
Peaxi162Scf00327g00121 Petunia axillaris HOM05D001840 ORTHO05D002076 8.0e-07 59.3 81 35.8
Pp3c18_17150 Physcomitrium patens HOM05D001840 ORTHO05D022354 8.0e-07 59.3 74 37.8
Pp3c18_17160 Physcomitrium patens HOM05D001840 ORTHO05D022354 8.0e-07 59.3 74 37.8
Thecc.09G054800 Theobroma cacao HOM05D001840 ORTHO05D002076 8.0e-07 59.3 157 29.9
vmacro00138 Vaccinium macrocarpon HOM05D001840 ORTHO05D002076 8.0e-07 59.3 98 31.6
CANSAT25G1846 Cannabis sativa HOM05D001840 ORTHO05D002076 1.0e-06 58.9 107 29.9
FvH4_7g15550 Fragaria vesca HOM05D001840 ORTHO05D002076 1.0e-06 58.9 117 26.5
FAN01G3022 Fragaria x ananassa HOM05D001840 ORTHO05D002076 1.0e-06 58.9 117 26.5
FAN03G1230 Fragaria x ananassa HOM05D001840 ORTHO05D002076 1.0e-06 58.9 117 26.5
FAN06G4375 Fragaria x ananassa HOM05D001840 ORTHO05D002076 1.0e-06 58.9 117 26.5
FAN06G4505 Fragaria x ananassa HOM05D001840 ORTHO05D002076 1.0e-06 58.9 117 26.5
FAN10G0288 Fragaria x ananassa HOM05D001840 ORTHO05D002076 1.0e-06 58.9 117 26.5
FAN10G0832 Fragaria x ananassa HOM05D001840 ORTHO05D002076 1.0e-06 58.9 117 26.5
Lj5g0012407 Lotus japonicus HOM05D001840 ORTHO05D002076 1.0e-06 58.9 98 30.6
CSS0037835 Camellia sinensis var. sinensis HOM05D001840 ORTHO05D002076 1.4e-06 58.5 100 29.0
FvH4_7g15570 Fragaria vesca HOM05D001840 ORTHO05D002076 1.4e-06 58.5 98 28.6
FAN01G0890 Fragaria x ananassa HOM05D001840 ORTHO05D002076 1.4e-06 58.5 98 28.6
FAN06G4570 Fragaria x ananassa HOM05D001840 ORTHO05D002076 1.4e-06 58.5 98 28.6
FAN10G1579 Fragaria x ananassa HOM05D001840 ORTHO05D002076 1.4e-06 58.5 98 28.6
FAN10G2803 Fragaria x ananassa HOM05D001840 ORTHO05D002076 1.4e-06 58.5 98 28.6
MD07G1130000 Malus domestica HOM05D001840 ORTHO05D002076 1.4e-06 58.5 91 29.7
Sabra06G0176700 Salix brachista HOM05D001840 ORTHO05D002076 1.4e-06 58.5 98 29.6
BcaC07g42674 Brassica carinata HOM05D001840 ORTHO05D002076 1.8e-06 58.2 98 28.6
Cpa.g.sc11.51 Carica papaya HOM05D001840 ORTHO05D002076 1.8e-06 58.2 100 29.0
FAN06G3667 Fragaria x ananassa HOM05D001840 ORTHO05D002076 1.8e-06 58.2 104 28.8
MBI07_g42962_MAGBIO Magnolia biondii HOM05D001840 ORTHO05D002076 1.8e-06 58.2 156 30.8
QL02p001083 Quercus lobata HOM05D001840 ORTHO05D002076 1.8e-06 58.2 49 44.9
Rhsim11G0043700 Rhododendron simsii HOM05D001840 ORTHO05D002076 1.8e-06 58.2 98 30.6
RcHm_v2.0_Chr1g0358201 Rosa chinensis HOM05D001840 ORTHO05D002076 1.8e-06 58.2 117 26.5
CARHR171890 Cardamine hirsuta HOM05D001840 ORTHO05D002076 2.3e-06 57.8 128 27.3
Dinv22893 Davidia involucrata HOM05D001840 ORTHO05D002076 2.3e-06 57.8 100 32.0
FAN20G2607 Fragaria x ananassa HOM05D001840 ORTHO05D002076 2.3e-06 57.8 113 33.6
FAN27G2276 Fragaria x ananassa HOM05D001840 ORTHO05D002076 2.3e-06 57.8 101 33.7
BcaC07g40668 Brassica carinata HOM05D001840 ORTHO05D002076 3.0e-06 57.4 98 28.6
A09p53640 Brassica napus HOM05D001840 ORTHO05D002076 3.0e-06 57.4 98 28.6
C08p36420 Brassica napus HOM05D001840 ORTHO05D002076 3.0e-06 57.4 98 28.6
BolC8t51225H Brassica oleracea HOM05D001840 ORTHO05D002076 3.0e-06 57.4 98 28.6
BraA09t40786Z Brassica rapa HOM05D001840 ORTHO05D002076 3.0e-06 57.4 98 28.6
CSS0009434 Camellia sinensis var. sinensis HOM05D001840 ORTHO05D002076 3.0e-06 57.4 121 25.6
Gohir.A05G041800 Gossypium hirsutum HOM05D001840 ORTHO05D002076 3.0e-06 57.4 109 28.4
Lsat_1_v5_gn_4_33880 Lactuca sativa HOM05D001840 ORTHO05D002076 3.0e-06 57.4 128 27.3
Nitab4.5_0000200g0060 Nicotiana tabacum HOM05D001840 ORTHO05D002076 3.0e-06 57.4 138 26.1
RcHm_v2.0_Chr1g0358241 Rosa chinensis HOM05D001840 ORTHO05D002076 3.0e-06 57.4 97 28.9
HPP92_006417 Vanilla planifolia HOM05D001840 ORTHO05D002076 3.0e-06 57.4 187 24.6
HPP92_023156 Vanilla planifolia HOM05D001840 ORTHO05D002076 3.0e-06 57.4 105 25.7
Aa31LG1G27590 Aethionema arabicum HOM05D001840 ORTHO05D002076 4.0e-06 57.0 98 27.6
CSS0006505 Camellia sinensis var. sinensis HOM05D001840 ORTHO05D002076 4.0e-06 57.0 102 27.5
Ciclev10020141m.g Citrus clementina HOM05D001840 ORTHO05D002076 4.0e-06 57.0 91 28.6
DCAR_025231 Daucus carota HOM05D001840 ORTHO05D002076 4.0e-06 57.0 91 29.7
DCAR_025232 Daucus carota HOM05D001840 ORTHO05D002076 4.0e-06 57.0 97 32.0
Gohir.D05G043500 Gossypium hirsutum HOM05D001840 ORTHO05D002076 4.0e-06 57.0 109 28.4
Gorai.009G044600 Gossypium raimondii HOM05D001840 ORTHO05D002076 4.0e-06 57.0 109 28.4
Hma1.2p1_0783F.1_g216950 Hydrangea macrophylla HOM05D001840 ORTHO05D002076 4.0e-06 57.0 91 28.6
Ah.05g180070 Amaranthus hybridus HOM05D001840 ORTHO05D002076 5.2e-06 56.6 107 26.2
AagrBONN_evm.TU.Sc2ySwM_344.2861 Anthoceros agrestis HOM05D001840 ORTHO05D002076 5.2e-06 56.6 105 30.5
Carub.0004s2889 Capsella rubella HOM05D001840 ORTHO05D002076 5.2e-06 56.6 128 26.6
Duzib133G0304 Durio zibethinus HOM05D001840 ORTHO05D002076 5.2e-06 56.6 98 27.6
Gohir.D11G098000 Gossypium hirsutum HOM05D001840 ORTHO05D002076 5.2e-06 56.6 97 27.8
Gorai.007G104200 Gossypium raimondii HOM05D001840 ORTHO05D002076 5.2e-06 56.6 97 27.8
Sp4g28250 Schrenkiella parvula HOM05D001840 ORTHO05D002076 5.2e-06 56.6 98 27.6
SEGI_31697 Sequoiadendron giganteum HOM05D001840 ORTHO05D002076 5.2e-06 56.6 98 28.6
TAR375G0160 Trochodendron aralioides HOM05D001840 ORTHO05D002076 5.2e-06 56.6 102 28.4
BcaC02g12706 Brassica carinata HOM05D001840 ORTHO05D002076 6.8e-06 56.2 118 28.0
C04p01830 Brassica napus HOM05D001840 ORTHO05D002076 6.8e-06 56.2 118 28.0
Dinv43875 Davidia involucrata HOM05D001840 ORTHO05D002076 6.8e-06 56.2 98 26.5
Thhalv10005967m.g Eutrema salsugineum HOM05D001840 ORTHO05D002076 6.8e-06 56.2 98 27.6
FvH4_2g31760 Fragaria vesca HOM05D001840 ORTHO05D002076 6.8e-06 56.2 101 33.7
FAN24G2473 Fragaria x ananassa HOM05D001840 ORTHO05D002076 6.8e-06 56.2 101 33.7
Lsat_1_v5_gn_7_2520 Lactuca sativa HOM05D001840 ORTHO05D002076 6.8e-06 56.2 128 25.8
Lj7P506T53 Lonicera japonica HOM05D001840 ORTHO05D002076 6.8e-06 56.2 121 28.1
Manes.01G251400 Manihot esculenta HOM05D001840 ORTHO05D002076 6.8e-06 56.2 116 27.6
Nitab4.5_0007575g0010 Nicotiana tabacum HOM05D001840 ORTHO05D002076 6.8e-06 56.2 110 26.4
Prupe.1G411100 Prunus persica HOM05D001840 ORTHO05D002076 6.8e-06 56.2 100 33.0
Actinidia10082 Actinidia chinensis HOM05D001840 ORTHO05D002076 8.9e-06 55.8 128 25.8
AL4G45470 Arabidopsis lyrata HOM05D001840 ORTHO05D002076 8.9e-06 55.8 98 28.6
AT2G46210 Arabidopsis thaliana HOM05D001840 ORTHO05D002076 8.9e-06 55.8 98 28.6
BcaC08g45139 Brassica carinata HOM05D001840 ORTHO05D002076 8.9e-06 55.8 98 27.6
A05p01620 Brassica napus HOM05D001840 ORTHO05D002076 8.9e-06 55.8 118 28.0
A07p25590 Brassica napus HOM05D001840 ORTHO05D002076 8.9e-06 55.8 98 27.6
C06p27580 Brassica napus HOM05D001840 ORTHO05D002076 8.9e-06 55.8 98 27.6
BolC6t37926H Brassica oleracea HOM05D001840 ORTHO05D002076 8.9e-06 55.8 98 27.6
BraA05t19158Z Brassica rapa HOM05D001840 ORTHO05D002076 8.9e-06 55.8 118 28.0
BraA07t30200Z Brassica rapa HOM05D001840 ORTHO05D002076 8.9e-06 55.8 98 27.6
CAN.G91.3 Capsicum annuum HOM05D001840 ORTHO05D002076 8.9e-06 55.8 131 26.7
CARHR141480 Cardamine hirsuta HOM05D001840 ORTHO05D002076 8.9e-06 55.8 98 28.6
COL.COLO4_06367 Corchorus olitorius HOM05D001840 ORTHO05D002076 8.9e-06 55.8 91 27.5
Duzib138G1185 Durio zibethinus HOM05D001840 ORTHO05D002076 8.9e-06 55.8 98 27.6
Gohir.A08G248100 Gossypium hirsutum HOM05D001840 ORTHO05D002076 8.9e-06 55.8 116 30.2
Gohir.A11G093100 Gossypium hirsutum HOM05D001840 ORTHO05D002076 8.9e-06 55.8 97 27.8
Nn1g01743 Nelumbo nucifera HOM05D001840 ORTHO05D002076 8.9e-06 55.8 157 28.7


User provided reference genes

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