Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO10G219 Micromonas commoda HOM05D004317 ORTHO05D005031 5.5e-231 803.9 398 100.0
AL8G42280 Arabidopsis lyrata HOM05D004317 ORTHO05D005031 1.8e-24 117.9 207 35.3
BcaC01g02714 Brassica carinata HOM05D004317 ORTHO05D005031 1.8e-24 117.9 207 33.8
C03p61360 Brassica napus HOM05D004317 ORTHO05D005031 1.8e-24 117.9 207 33.8
Sp2g27880 Schrenkiella parvula HOM05D004317 ORTHO05D005031 1.8e-24 117.9 207 33.8
A06p31600 Brassica napus HOM05D004317 ORTHO05D005031 2.4e-24 117.5 207 33.3
MSTRG.2526 Avicennia marina HOM05D004317 ORTHO05D005031 3.1e-24 117.1 334 28.4
BcaB02g09831 Brassica carinata HOM05D004317 ORTHO05D005031 3.1e-24 117.1 207 33.8
BcaB04g19996 Brassica carinata HOM05D004317 ORTHO05D005031 3.1e-24 117.1 207 33.8
AT5G64813 Arabidopsis thaliana HOM05D004317 ORTHO05D005031 4.1e-24 116.7 207 34.8
Carub.0008s2563 Capsella rubella HOM05D004317 ORTHO05D005031 5.3e-24 116.3 207 34.8
Thhalv10004519m.g Eutrema salsugineum HOM05D004317 ORTHO05D005031 7.0e-24 115.9 207 34.8
C09p10280 Brassica napus HOM05D004317 ORTHO05D005031 9.1e-24 115.5 207 34.3
BolC9t53928H Brassica oleracea HOM05D004317 ORTHO05D005031 9.1e-24 115.5 207 34.3
Migut.H02443 Erythranthe guttata HOM05D004317 ORTHO05D005031 9.1e-24 115.5 208 34.6
Cfa002764 Carpinus fangiana HOM05D004317 ORTHO05D005031 1.2e-23 115.2 229 34.1
TPR.G2235 Trifolium pratense HOM05D004317 ORTHO05D005031 1.6e-23 114.8 343 28.6
BraA09t36537Z Brassica rapa HOM05D004317 ORTHO05D005031 2.0e-23 114.4 207 33.3
CARHR278810 Cardamine hirsuta HOM05D004317 ORTHO05D005031 2.0e-23 114.4 207 33.8
Aa31LG1G17120 Aethionema arabicum HOM05D004317 ORTHO05D005031 3.5e-23 113.6 207 32.9
arahy.Tifrunner.gnm1.ann1.8U6WSJ Arachis hypogaea HOM05D004317 ORTHO05D005031 3.5e-23 113.6 190 37.4
GSVIVG01013682001 Vitis vinifera HOM05D004317 ORTHO05D005031 3.5e-23 113.6 207 32.9
BcaC04g23277 Brassica carinata HOM05D004317 ORTHO05D005031 4.5e-23 113.2 207 33.3
CiPaw.04G091000 Carya illinoinensis HOM05D004317 ORTHO05D005031 4.5e-23 113.2 207 34.8
GSVIVG01022244001 Vitis vinifera HOM05D004317 ORTHO05D005031 4.5e-23 113.2 190 34.7
A09p08860 Brassica napus HOM05D004317 ORTHO05D005031 5.9e-23 112.8 207 33.3
Psat7g050920 Pisum sativum HOM05D004317 ORTHO05D005031 5.9e-23 112.8 190 36.3
THA.LOC104819313 Tarenaya hassleriana HOM05D004317 ORTHO05D005031 5.9e-23 112.8 207 33.8
arahy.Tifrunner.gnm1.ann1.QW6G0A Arachis hypogaea HOM05D004317 ORTHO05D005031 7.7e-23 112.5 233 32.6
Cc11_g00180 Coffea canephora HOM05D004317 ORTHO05D005031 7.7e-23 112.5 207 31.4
Eucgr.H04871 Eucalyptus grandis HOM05D004317 ORTHO05D005031 7.7e-23 112.5 207 33.3
Glyma.05G184400 Glycine max HOM05D004317 ORTHO05D005031 7.7e-23 112.5 190 35.8
Gorai.007G245100 Gossypium raimondii HOM05D004317 ORTHO05D005031 7.7e-23 112.5 211 36.0
Medtr8g091980 Medicago truncatula HOM05D004317 ORTHO05D005031 7.7e-23 112.5 190 35.8
CDE05G1892 Ceratophyllum demersum HOM05D004317 ORTHO05D005031 1.0e-22 112.1 190 36.3
Glyma.08G142300 Glycine max HOM05D004317 ORTHO05D005031 1.0e-22 112.1 207 34.3
Lalb_Chr11g0068101 Lupinus albus HOM05D004317 ORTHO05D005031 1.0e-22 112.1 207 33.3
TAR381G0083 Trochodendron aralioides HOM05D004317 ORTHO05D005031 1.0e-22 112.1 207 32.9
VMungo0251G1621 Vigna mungo HOM05D004317 ORTHO05D005031 1.0e-22 112.1 331 28.4
Dinv42682 Davidia involucrata HOM05D004317 ORTHO05D005031 1.3e-22 111.7 207 33.3
Gohir.A11G197500 Gossypium hirsutum HOM05D004317 ORTHO05D005031 1.3e-22 111.7 211 35.1
Gohir.D11G232000 Gossypium hirsutum HOM05D004317 ORTHO05D005031 1.3e-22 111.7 211 35.5
Lalb_Chr12g0203501 Lupinus albus HOM05D004317 ORTHO05D005031 1.3e-22 111.7 207 33.8
Nn1g05158 Nelumbo nucifera HOM05D004317 ORTHO05D005031 1.3e-22 111.7 207 35.3
THA.LOC104799321 Tarenaya hassleriana HOM05D004317 ORTHO05D005031 1.3e-22 111.7 207 31.9
ClCG02G000980 Citrullus lanatus HOM05D004317 ORTHO05D005031 1.7e-22 111.3 229 32.8
Peaxi162Scf00270g00910 Petunia axillaris HOM05D004317 ORTHO05D005031 1.7e-22 111.3 332 28.6
Phvul.002G265300 Phaseolus vulgaris HOM05D004317 ORTHO05D005031 1.7e-22 111.3 331 28.1
QL06p031876 Quercus lobata HOM05D004317 ORTHO05D005031 1.7e-22 111.3 207 34.3
CANSAT01G1092 Cannabis sativa HOM05D004317 ORTHO05D005031 2.2e-22 110.9 207 33.3
MELO3C020962.2 Cucumis melo HOM05D004317 ORTHO05D005031 2.2e-22 110.9 229 32.3
CsaV3_2G017700 Cucumis sativus L. HOM05D004317 ORTHO05D005031 2.2e-22 110.9 229 32.3
Sabra07G0067200 Salix brachista HOM05D004317 ORTHO05D005031 2.2e-22 110.9 207 32.9
Aqoxy6G00452 Aquilegia oxysepala HOM05D004317 ORTHO05D005031 2.9e-22 110.5 191 36.6
DCAR_000764 Daucus carota HOM05D004317 ORTHO05D005031 2.9e-22 110.5 210 35.7
Oeu028366.1 Olea europaea HOM05D004317 ORTHO05D005031 2.9e-22 110.5 210 33.8
Sc03g0004440 Simmondsia chinensis HOM05D004317 ORTHO05D005031 2.9e-22 110.5 207 33.3
TAR625G1069 Trochodendron aralioides HOM05D004317 ORTHO05D005031 2.9e-22 110.5 207 33.3
vmacro18639 Vaccinium macrocarpon HOM05D004317 ORTHO05D005031 2.9e-22 110.5 281 31.0
Mapoly0088s0081 Marchantia polymorpha HOM05D004317 ORTHO05D005031 3.8e-22 110.2 207 32.4
MSTRG.23310 Avicennia marina HOM05D004317 ORTHO05D005031 5.0e-22 109.8 191 35.1
Ca_17692_v3 Cicer arietinum L. HOM05D004317 ORTHO05D005031 5.0e-22 109.8 190 35.3
Sed0006410 Sechium edule HOM05D004317 ORTHO05D005031 5.0e-22 109.8 211 34.6
Dinv19475 Davidia involucrata HOM05D004317 ORTHO05D005031 6.5e-22 109.4 207 32.9
Duzib147G1288 Durio zibethinus HOM05D004317 ORTHO05D005031 6.5e-22 109.4 190 35.3
Lj4g0017689 Lotus japonicus HOM05D004317 ORTHO05D005031 6.5e-22 109.4 183 36.1
Potri.005G085100 Populus trichocarpa HOM05D004317 ORTHO05D005031 6.5e-22 109.4 207 31.9
Sed0024973 Sechium edule HOM05D004317 ORTHO05D005031 6.5e-22 109.4 292 29.8
Hund03530 Selenicereus undatus HOM05D004317 ORTHO05D005031 6.5e-22 109.4 183 35.0
Carub.0006s0835 Capsella rubella HOM05D004317 ORTHO05D005031 8.5e-22 109.0 207 30.9
CiPaw.03G133600 Carya illinoinensis HOM05D004317 ORTHO05D005031 8.5e-22 109.0 190 36.8
COL.COLO4_10999 Corchorus olitorius HOM05D004317 ORTHO05D005031 8.5e-22 109.0 207 33.3
ECA240G0243 Erigeron canadensis HOM05D004317 ORTHO05D005031 8.5e-22 109.0 207 33.3
Lalb_Chr13g0296231 Lupinus albus HOM05D004317 ORTHO05D005031 8.5e-22 109.0 207 34.3
MD15G1445400 Malus domestica HOM05D004317 ORTHO05D005031 8.5e-22 109.0 190 35.3
Manes.12G143400 Manihot esculenta HOM05D004317 ORTHO05D005031 8.5e-22 109.0 190 33.7
Sc07g0001570 Simmondsia chinensis HOM05D004317 ORTHO05D005031 8.5e-22 109.0 190 34.2
arahy.Tifrunner.gnm1.ann1.N9CCL6 Arachis hypogaea HOM05D004317 ORTHO05D005031 1.1e-21 108.6 207 34.3
Duzib187G1335 Durio zibethinus HOM05D004317 ORTHO05D005031 1.1e-21 108.6 207 34.8
Duzib264G0693 Durio zibethinus HOM05D004317 ORTHO05D005031 1.1e-21 108.6 190 34.2
HanXRQChr03g0078021 Helianthus annuus HOM05D004317 ORTHO05D005031 1.1e-21 108.6 192 33.9
Oeu015853.1 Olea europaea HOM05D004317 ORTHO05D005031 1.1e-21 108.6 192 34.9
Thecc.01G114600 Theobroma cacao HOM05D004317 ORTHO05D005031 1.1e-21 108.6 207 33.8
Sp6g33500 Schrenkiella parvula HOM05D004317 ORTHO05D005031 1.5e-21 108.2 207 32.4
FvH4_1g22810 Fragaria vesca HOM05D004317 ORTHO05D005031 1.9e-21 107.8 207 34.3
EL10Ac1g01634 Beta vulgaris HOM05D004317 ORTHO05D005031 2.5e-21 107.5 212 33.5
Hma1.2p1_0375F.1_g138790 Hydrangea macrophylla HOM05D004317 ORTHO05D005031 2.5e-21 107.5 211 32.2
MD08G1250200 Malus domestica HOM05D004317 ORTHO05D005031 2.5e-21 107.5 185 35.1
Peaxi162Scf00106g01615 Petunia axillaris HOM05D004317 ORTHO05D005031 2.5e-21 107.5 331 27.5
RcHm_v2.0_Chr2g0117121 Rosa chinensis HOM05D004317 ORTHO05D005031 2.5e-21 107.5 190 35.8
Ah.02g125940 Amaranthus hybridus HOM05D004317 ORTHO05D005031 3.2e-21 107.1 207 32.9
Cpa.g.sc191.9 Carica papaya HOM05D004317 ORTHO05D005031 3.2e-21 107.1 190 36.3
Atru.chr4.2810 Acer truncatum HOM05D004317 ORTHO05D005031 4.2e-21 106.7 190 33.7
FAN19G1483 Fragaria x ananassa HOM05D004317 ORTHO05D005031 4.2e-21 106.7 190 35.3
FAN26G1550 Fragaria x ananassa HOM05D004317 ORTHO05D005031 4.2e-21 106.7 190 35.3
FAN28G2916 Fragaria x ananassa HOM05D004317 ORTHO05D005031 4.2e-21 106.7 190 35.3
Lsat_1_v5_gn_6_7740 Lactuca sativa HOM05D004317 ORTHO05D005031 4.2e-21 106.7 190 33.2
PGR102G1870 Punica granatum HOM05D004317 ORTHO05D005031 4.2e-21 106.7 190 33.7
EL10Ac6g14771 Beta vulgaris HOM05D004317 ORTHO05D005031 5.5e-21 106.3 183 35.0
Nitab4.5_0004977g0020 Nicotiana tabacum HOM05D004317 ORTHO05D005031 5.5e-21 106.3 229 31.4
AL6G20330 Arabidopsis lyrata HOM05D004317 ORTHO05D005031 7.2e-21 105.9 207 30.4
AUR62027164 Chenopodium quinoa HOM05D004317 ORTHO05D005031 7.2e-21 105.9 207 33.3
AUR62034924 Chenopodium quinoa HOM05D004317 ORTHO05D005031 7.2e-21 105.9 191 34.0
Nitab4.5_0000184g0250 Nicotiana tabacum HOM05D004317 ORTHO05D005031 7.2e-21 105.9 207 32.4
PSO675G4086 Papaver somniferum HOM05D004317 ORTHO05D005031 7.2e-21 105.9 190 34.7
Rhsim08G0005500 Rhododendron simsii HOM05D004317 ORTHO05D005031 7.2e-21 105.9 204 34.8
arahy.Tifrunner.gnm1.ann1.IW8T8H Arachis hypogaea HOM05D004317 ORTHO05D005031 9.4e-21 105.5 207 33.8
Gohir.A11G053900 Gossypium hirsutum HOM05D004317 ORTHO05D005031 9.4e-21 105.5 190 33.7
Gohir.D11G057400 Gossypium hirsutum HOM05D004317 ORTHO05D005031 9.4e-21 105.5 190 33.7
Gorai.007G062600 Gossypium raimondii HOM05D004317 ORTHO05D005031 9.4e-21 105.5 190 33.7
Solyc04g051700.3 Solanum lycopersicum HOM05D004317 ORTHO05D005031 9.4e-21 105.5 207 33.3
vmacro12895 Vaccinium macrocarpon HOM05D004317 ORTHO05D005031 9.4e-21 105.5 210 32.4
AUR62003298 Chenopodium quinoa HOM05D004317 ORTHO05D005031 1.2e-20 105.1 207 33.3
Lj4A864T19 Lonicera japonica HOM05D004317 ORTHO05D005031 1.2e-20 105.1 211 32.7
Rhsim10G0148900 Rhododendron simsii HOM05D004317 ORTHO05D005031 1.2e-20 105.1 210 32.4
HPP92_021785 Vanilla planifolia HOM05D004317 ORTHO05D005031 1.2e-20 105.1 197 36.0
HanXRQChr02g0047931 Helianthus annuus HOM05D004317 ORTHO05D005031 2.7e-20 104.0 207 31.4
Ah.05g168370 Amaranthus hybridus HOM05D004317 ORTHO05D005031 4.7e-20 103.2 208 31.2
AT5G09910 Arabidopsis thaliana HOM05D004317 ORTHO05D005031 4.7e-20 103.2 207 30.4
BolC3t18396H Brassica oleracea HOM05D004317 ORTHO05D005031 4.7e-20 103.2 197 31.5
Ciclev10026038m.g Citrus clementina HOM05D004317 ORTHO05D005031 4.7e-20 103.2 229 29.7
Os10g0135200 Oryza sativa ssp. japonica HOM05D004317 ORTHO05D005031 4.7e-20 103.2 210 33.3
PGSC0003DMG402031196 Solanum tuberosum HOM05D004317 ORTHO05D005031 4.7e-20 103.2 183 35.0
BraA06t26097Z Brassica rapa HOM05D004317 ORTHO05D005031 6.1e-20 102.8 196 31.6
CAN.G241.17 Capsicum annuum HOM05D004317 ORTHO05D005031 6.1e-20 102.8 207 32.9
FAN23G2660 Fragaria x ananassa HOM05D004317 ORTHO05D005031 6.1e-20 102.8 190 32.6
PSO541G5773 Papaver somniferum HOM05D004317 ORTHO05D005031 6.1e-20 102.8 190 33.7
Sopen04g023080 Solanum pennellii HOM05D004317 ORTHO05D005031 6.1e-20 102.8 182 35.7
Nn5g28875 Nelumbo nucifera HOM05D004317 ORTHO05D005031 1.0e-19 102.1 196 33.7
ATR1120G075 Amborella trichopoda HOM05D004317 ORTHO05D005031 1.4e-19 101.7 197 34.0
PSO210G1492 Papaver somniferum HOM05D004317 ORTHO05D005031 1.4e-19 101.7 207 31.9
PSO170G2871 Papaver somniferum HOM05D004317 ORTHO05D005031 1.8e-19 101.3 207 31.4
Zm00001eb398890 Zea mays HOM05D004317 ORTHO05D005031 1.8e-19 101.3 206 32.5
Haze_25055 Corylus avellana HOM05D004317 ORTHO05D005031 2.3e-19 100.9 253 30.4
Zm00001eb224280 Zea mays HOM05D004317 ORTHO05D005031 2.3e-19 100.9 207 31.9
Sabra05G0069900 Salix brachista HOM05D004317 ORTHO05D005031 5.2e-19 99.8 221 31.2
Os03g0242200 Oryza sativa ssp. japonica HOM05D004317 ORTHO05D005031 6.7e-19 99.4 207 32.9
SGA_v2.0_scaffold2G01290 Striga asiatica HOM05D004317 ORTHO05D005031 6.7e-19 99.4 186 31.7
SMO364G0333 Selaginella moellendorffii HOM05D004317 ORTHO05D005031 1.1e-18 98.6 191 33.5
Lj2C567G4 Lonicera japonica HOM05D004317 ORTHO05D005031 1.5e-18 98.2 197 34.0
unitig_0.g479 Utricularia gibba HOM05D004317 ORTHO05D005031 2.0e-18 97.8 199 32.7
Potri.007G080100 Populus trichocarpa HOM05D004317 ORTHO05D005031 3.3e-18 97.1 196 31.6
TWI79G1778 Tripterygium wilfordii HOM05D004317 ORTHO05D005031 5.7e-18 96.3 179 33.5
CDE11G1235 Ceratophyllum demersum HOM05D004317 ORTHO05D005031 6.3e-17 92.8 154 33.8
MBI01_g44371_MAGBIO Magnolia biondii HOM05D004317 ORTHO05D005031 1.1e-16 92.0 201 30.8
HPP92_009117 Vanilla planifolia HOM05D004317 ORTHO05D005031 1.2e-15 88.6 147 32.7
CARHR203430 Cardamine hirsuta HOM05D004317 ORTHO05D005031 2.0e-15 87.8 194 28.9
Rhsim07G0116100 Rhododendron simsii HOM05D004317 ORTHO05D005031 3.5e-15 87.0 218 32.1
SEGI_23806 Sequoiadendron giganteum HOM05D004317 ORTHO05D005031 9.8e-10 68.9 102 37.3
SalBow5G1590 Salvia bowleyana HOM05D004317 ORTHO05D005031 1.7e-09 68.2 103 35.0
SalBow6G4125 Salvia bowleyana HOM05D004317 ORTHO05D005031 1.7e-09 68.2 101 35.6
DCAR_001376 Daucus carota HOM05D004317 ORTHO05D005031 2.9e-06 57.4 230 28.7


User provided reference genes

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