Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 1.5e-164 582.8 292 100.0
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 3.2e-74 282.7 288 49.3
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 4.7e-70 268.9 291 48.1
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 4.7e-70 268.9 294 50.0
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 6.2e-70 268.5 294 49.3
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 1.4e-69 267.3 294 49.3
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 3.1e-69 266.2 294 48.3
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 2.0e-68 263.5 285 50.5
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 2.6e-68 263.1 294 48.3
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 2.6e-68 263.1 293 48.1
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 3.4e-68 262.7 294 49.0
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 3.4e-68 262.7 293 47.8
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 4.4e-68 262.3 294 48.3
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 7.5e-68 261.5 294 47.6
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 7.5e-68 261.5 294 47.6
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 9.8e-68 261.2 294 47.3
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 9.8e-68 261.2 296 48.0
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 1.3e-67 260.8 294 48.6
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 1.3e-67 260.8 294 49.0
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 1.3e-67 260.8 290 47.9
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 1.3e-67 260.8 294 47.6
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 1.3e-67 260.8 296 47.0
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 1.3e-67 260.8 294 48.0
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 1.7e-67 260.4 295 47.5
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 2.2e-67 260.0 294 48.0
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 2.2e-67 260.0 296 47.6
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 2.2e-67 260.0 293 48.1
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 2.9e-67 259.6 295 48.1
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 2.9e-67 259.6 294 46.6
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 2.9e-67 259.6 294 47.6
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 2.9e-67 259.6 292 46.2
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 3.7e-67 259.2 297 48.5
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 4.9e-67 258.8 297 48.1
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 1.1e-66 257.7 285 47.4
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 1.1e-66 257.7 294 46.9
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 1.1e-66 257.7 294 46.3
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 1.1e-66 257.7 292 45.9
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 1.4e-66 257.3 294 47.6
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 1.4e-66 257.3 295 45.8
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 1.4e-66 257.3 322 45.0
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 1.9e-66 256.9 292 45.9
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 2.4e-66 256.5 294 46.3
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 3.2e-66 256.1 295 47.5
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 3.2e-66 256.1 296 47.3
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 3.2e-66 256.1 294 48.0
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 4.1e-66 255.8 290 46.6
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 5.4e-66 255.4 292 48.3
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 7.0e-66 255.0 273 48.0
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 7.0e-66 255.0 296 47.0
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 9.2e-66 254.6 293 48.8
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 1.2e-65 254.2 296 46.3
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 1.2e-65 254.2 294 47.6
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 1.2e-65 254.2 285 48.1
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 1.6e-65 253.8 294 46.9
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 2.0e-65 253.4 296 46.3
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 3.5e-65 252.7 296 47.0
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 3.5e-65 252.7 296 47.3
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 3.5e-65 252.7 296 47.0
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 3.5e-65 252.7 294 47.3
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 3.5e-65 252.7 285 48.1
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 3.5e-65 252.7 285 47.4
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 3.5e-65 252.7 291 47.4
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 4.6e-65 252.3 285 47.0
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 6.0e-65 251.9 285 47.7
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 6.0e-65 251.9 296 46.3
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 6.0e-65 251.9 293 45.4
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 6.0e-65 251.9 285 47.7
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 7.8e-65 251.5 285 47.7
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 1.0e-64 251.1 296 47.3
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 1.3e-64 250.8 296 45.9
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 1.3e-64 250.8 294 47.3
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 1.7e-64 250.4 291 46.7
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 1.7e-64 250.4 280 45.7
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 1.7e-64 250.4 296 46.6
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 2.3e-64 250.0 296 46.3
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 5.0e-64 248.8 294 46.3
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 6.6e-64 248.4 295 46.8
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 8.6e-64 248.1 294 46.9
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 1.1e-63 247.7 295 45.8
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 1.1e-63 247.7 304 44.4
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 1.9e-63 246.9 295 45.8
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 1.9e-63 246.9 294 45.6
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 1.9e-63 246.9 294 46.9
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 2.5e-63 246.5 285 47.4
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 2.5e-63 246.5 286 47.6
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 2.5e-63 246.5 295 45.8
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 2.5e-63 246.5 294 45.6
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 3.3e-63 246.1 306 44.8
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 4.3e-63 245.7 295 45.8
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 4.3e-63 245.7 295 45.8
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 4.3e-63 245.7 295 45.8
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 4.3e-63 245.7 295 45.4
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 5.6e-63 245.4 295 45.4
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 5.6e-63 245.4 295 45.8
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 5.6e-63 245.4 295 45.8
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 5.6e-63 245.4 294 45.6
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 5.6e-63 245.4 270 47.8
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 9.5e-63 244.6 293 46.1
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 1.2e-62 244.2 295 45.4
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 1.2e-62 244.2 295 45.4
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 2.1e-62 243.4 296 45.3
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 2.8e-62 243.0 295 45.4
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 2.8e-62 243.0 289 47.1
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 3.6e-62 242.7 275 47.3
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 4.7e-62 242.3 295 45.8
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 4.7e-62 242.3 285 45.3
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 4.7e-62 242.3 293 44.7
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 1.1e-61 241.1 296 44.3
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 1.1e-61 241.1 289 47.1
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 1.8e-61 240.4 287 45.3
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 3.1e-61 239.6 293 45.1
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 2.6e-60 236.5 296 43.6
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 3.4e-60 236.1 295 44.1
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 4.4e-60 235.7 288 44.4
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 5.8e-60 235.3 304 43.4
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 5.8e-60 235.3 304 43.4
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 5.8e-60 235.3 304 43.4
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 5.8e-60 235.3 289 43.9
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 4.9e-59 232.3 251 48.2
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.1e-58 231.1 304 42.8
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.4e-58 229.9 313 41.9
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 2.4e-58 229.9 294 44.2
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 7.1e-58 228.4 300 43.7
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 3.5e-57 226.1 255 48.2
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.2e-54 217.6 241 46.1
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 1.7e-51 207.2 292 41.1
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 8.6e-48 194.9 298 37.2
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 2.8e-46 189.9 282 40.4
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 8.1e-46 188.3 309 39.8
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 3.2e-42 176.4 204 46.1
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 6.6e-40 168.7 271 37.6
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 6.6e-40 168.7 204 43.6
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 2.5e-39 166.8 204 45.1
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 4.9e-27 125.9 211 34.1
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 1.0e-19 101.7 135 43.7
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 2.3e-16 90.5 91 53.8
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 6.7e-16 89.0 98 46.9
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 1.3e-14 84.7 94 46.8
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 4.8e-14 82.8 91 50.5
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 4.2e-10 69.7 77 50.6
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 1.6e-06 57.8 92 39.1
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 1.6e-06 57.8 92 39.1


User provided reference genes

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