Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G834 Micromonas commoda HOM05D005148 ORTHO05D006218 5.2e-196 688.0 468 100.0
Pp3c19_14080 Physcomitrium patens HOM05D005148 ORTHO05D006218 7.1e-52 209.1 154 64.3
MD11G1223400 Malus domestica HOM05D005148 ORTHO05D006218 4.6e-51 206.5 154 63.6
Aqoxy5G02091 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 6.0e-51 206.1 185 55.7
CBR_g38419 Chara braunii HOM05D005148 ORTHO05D006218 6.0e-51 206.1 178 57.3
MD03G1208700 Malus domestica HOM05D005148 ORTHO05D006218 1.7e-50 204.5 154 63.0
GSVIVG01030604001 Vitis vinifera HOM05D005148 ORTHO05D006218 1.7e-50 204.5 154 61.0
TAR626G1940 Trochodendron aralioides HOM05D005148 ORTHO05D006218 2.3e-50 204.1 154 62.3
CiPaw.11G186500 Carya illinoinensis HOM05D005148 ORTHO05D006218 3.0e-50 203.8 154 61.7
ECA246G0930 Erigeron canadensis HOM05D005148 ORTHO05D006218 3.9e-50 203.4 177 55.9
Nitab4.5_0001393g0210 Nicotiana tabacum HOM05D005148 ORTHO05D006218 3.9e-50 203.4 184 53.3
QL03p062820 Quercus lobata HOM05D005148 ORTHO05D006218 3.9e-50 203.4 154 62.3
Lsat_1_v5_gn_5_13800 Lactuca sativa HOM05D005148 ORTHO05D006218 6.6e-50 202.6 154 59.7
CDE02G2943 Ceratophyllum demersum HOM05D005148 ORTHO05D006218 8.7e-50 202.2 155 61.9
CSS0036538 Camellia sinensis var. sinensis HOM05D005148 ORTHO05D006218 1.1e-49 201.8 154 59.1
Hma1.2p1_0938F.1_g239180 Hydrangea macrophylla HOM05D005148 ORTHO05D006218 1.1e-49 201.8 154 61.0
Potri.001G420400 Populus trichocarpa HOM05D005148 ORTHO05D006218 1.1e-49 201.8 184 55.4
SEGI_03914 Sequoiadendron giganteum HOM05D005148 ORTHO05D006218 1.1e-49 201.8 154 61.0
PGSC0003DMG400014426 Solanum tuberosum HOM05D005148 ORTHO05D006218 1.1e-49 201.8 184 52.7
AagrBONN_evm.TU.Sc2ySwM_362.1748 Anthoceros agrestis HOM05D005148 ORTHO05D006218 1.5e-49 201.4 201 53.2
CAN.G1781.10 Capsicum annuum HOM05D005148 ORTHO05D006218 1.5e-49 201.4 184 52.2
Cc05_g13470 Coffea canephora HOM05D005148 ORTHO05D006218 1.5e-49 201.4 154 59.7
Dinv22285 Davidia involucrata HOM05D005148 ORTHO05D006218 1.5e-49 201.4 154 59.7
Migut.H01845 Erythranthe guttata HOM05D005148 ORTHO05D006218 1.5e-49 201.4 154 60.4
HanXRQChr08g0235221 Helianthus annuus HOM05D005148 ORTHO05D006218 1.5e-49 201.4 154 60.4
Solyc10g006390.3 Solanum lycopersicum HOM05D005148 ORTHO05D006218 1.5e-49 201.4 184 52.2
Sopen10g002340 Solanum pennellii HOM05D005148 ORTHO05D006218 1.5e-49 201.4 184 52.2
FvH4_3g22101 Fragaria vesca HOM05D005148 ORTHO05D006218 1.9e-49 201.1 154 60.4
RcHm_v2.0_Chr5g0037921 Rosa chinensis HOM05D005148 ORTHO05D006218 1.9e-49 201.1 154 60.4
PGR042G3618 Punica granatum HOM05D005148 ORTHO05D006218 2.5e-49 200.7 181 56.4
Zm00001eb286040 Zea mays HOM05D005148 ORTHO05D006218 2.5e-49 200.7 154 59.7
Atru.chr2.3744 Acer truncatum HOM05D005148 ORTHO05D006218 3.3e-49 200.3 154 60.4
ATR0752G127 Amborella trichopoda HOM05D005148 ORTHO05D006218 3.3e-49 200.3 165 59.4
Sc03g0008800 Simmondsia chinensis HOM05D005148 ORTHO05D006218 3.3e-49 200.3 189 52.9
SGA_v2.0_scaffold115G32129 Striga asiatica HOM05D005148 ORTHO05D006218 3.3e-49 200.3 184 54.3
Atru.chr2.3757 Acer truncatum HOM05D005148 ORTHO05D006218 4.3e-49 199.9 154 60.4
CDE05G0897 Ceratophyllum demersum HOM05D005148 ORTHO05D006218 4.3e-49 199.9 154 61.0
Rhsim04G0000500 Rhododendron simsii HOM05D005148 ORTHO05D006218 4.3e-49 199.9 154 59.7
Eucgr.F00968 Eucalyptus grandis HOM05D005148 ORTHO05D006218 7.3e-49 199.1 184 54.9
Manes.03G127500 Manihot esculenta HOM05D005148 ORTHO05D006218 7.3e-49 199.1 154 59.7
Sed0006852 Sechium edule HOM05D005148 ORTHO05D006218 7.3e-49 199.1 184 53.3
Mapoly0068s0031 Marchantia polymorpha HOM05D005148 ORTHO05D006218 9.6e-49 198.7 154 60.4
Prupe.4G208000 Prunus persica HOM05D005148 ORTHO05D006218 9.6e-49 198.7 182 53.8
Glyma.18G102900 Glycine max HOM05D005148 ORTHO05D006218 1.3e-48 198.4 184 56.0
TPR.G13552 Trifolium pratense HOM05D005148 ORTHO05D006218 1.3e-48 198.4 155 59.4
PSO541G0017 Papaver somniferum HOM05D005148 ORTHO05D006218 1.6e-48 198.0 154 60.4
PSO675G4432 Papaver somniferum HOM05D005148 ORTHO05D006218 1.6e-48 198.0 154 60.4
MSTRG.12962 Avicennia marina HOM05D005148 ORTHO05D006218 2.1e-48 197.6 185 54.6
Phvul.006G037500 Phaseolus vulgaris HOM05D005148 ORTHO05D006218 2.1e-48 197.6 154 59.7
RcHm_v2.0_Chr4g0405041 Rosa chinensis HOM05D005148 ORTHO05D006218 2.1e-48 197.6 154 59.1
Nn1g07082 Nelumbo nucifera HOM05D005148 ORTHO05D006218 3.6e-48 196.8 183 55.2
arahy.Tifrunner.gnm1.ann1.ICWX02 Arachis hypogaea HOM05D005148 ORTHO05D006218 4.8e-48 196.4 154 59.7
CsaV3_3G023250 Cucumis sativus L. HOM05D005148 ORTHO05D006218 4.8e-48 196.4 184 53.3
Glyma.09G101200 Glycine max HOM05D005148 ORTHO05D006218 4.8e-48 196.4 184 54.9
CANSAT54G0232 Cannabis sativa HOM05D005148 ORTHO05D006218 6.2e-48 196.1 185 53.0
Ciclev10008061m.g Citrus clementina HOM05D005148 ORTHO05D006218 6.2e-48 196.1 181 56.4
Lj6g0026690 Lotus japonicus HOM05D005148 ORTHO05D006218 6.2e-48 196.1 154 61.0
HPP92_019925 Vanilla planifolia HOM05D005148 ORTHO05D006218 6.2e-48 196.1 184 53.3
Duzib268G1307 Durio zibethinus HOM05D005148 ORTHO05D006218 8.1e-48 195.7 183 56.8
Gohir.A13G139300 Gossypium hirsutum HOM05D005148 ORTHO05D006218 8.1e-48 195.7 184 54.3
Thecc.07G044600 Theobroma cacao HOM05D005148 ORTHO05D006218 8.1e-48 195.7 184 54.9
Ca_14709_v3 Cicer arietinum L. HOM05D005148 ORTHO05D006218 1.1e-47 195.3 182 53.8
Medtr3g049440 Medicago truncatula HOM05D005148 ORTHO05D006218 1.4e-47 194.9 191 50.8
Lalb_Chr20g0114191 Lupinus albus HOM05D005148 ORTHO05D006218 1.8e-47 194.5 154 59.1
Psat5g183400 Pisum sativum HOM05D005148 ORTHO05D006218 1.8e-47 194.5 195 49.2
Hund14204 Selenicereus undatus HOM05D005148 ORTHO05D006218 1.8e-47 194.5 154 58.4
AL3G34380 Arabidopsis lyrata HOM05D005148 ORTHO05D006218 2.4e-47 194.1 154 59.1
AT3G20550 Arabidopsis thaliana HOM05D005148 ORTHO05D006218 2.4e-47 194.1 154 59.1
Carub.0003s2052 Capsella rubella HOM05D005148 ORTHO05D006218 2.4e-47 194.1 154 58.4
Nitab4.5_0005048g0010 Nicotiana tabacum HOM05D005148 ORTHO05D006218 2.4e-47 194.1 168 55.4
Atru.chr2.3269 Acer truncatum HOM05D005148 ORTHO05D006218 3.1e-47 193.7 181 54.1
EL10Ac4g07904 Beta vulgaris HOM05D005148 ORTHO05D006218 3.1e-47 193.7 181 53.0
Os05g0545600 Oryza sativa ssp. japonica HOM05D005148 ORTHO05D006218 3.1e-47 193.7 155 59.4
Aa31LG8G7350 Aethionema arabicum HOM05D005148 ORTHO05D006218 4.0e-47 193.4 154 58.4
AUR62008441 Chenopodium quinoa HOM05D005148 ORTHO05D006218 9.0e-47 192.2 156 57.1
CARHR096320 Cardamine hirsuta HOM05D005148 ORTHO05D006218 1.5e-46 191.4 154 57.1
FAN05G2630 Fragaria x ananassa HOM05D005148 ORTHO05D006218 2.0e-46 191.0 153 58.8
Sp3g18560 Schrenkiella parvula HOM05D005148 ORTHO05D006218 2.0e-46 191.0 184 52.7
Medtr5g081620 Medicago truncatula HOM05D005148 ORTHO05D006218 2.6e-46 190.7 155 58.1
FvH4_6g43590 Fragaria vesca HOM05D005148 ORTHO05D006218 7.6e-46 189.1 154 56.5
BcaB04g19113 Brassica carinata HOM05D005148 ORTHO05D006218 1.3e-45 188.3 154 57.1
EL10Ac5g11049 Beta vulgaris HOM05D005148 ORTHO05D006218 2.2e-45 187.6 172 54.7
A03p41800 Brassica napus HOM05D005148 ORTHO05D006218 2.2e-45 187.6 154 56.5
C03p51180 Brassica napus HOM05D005148 ORTHO05D006218 2.2e-45 187.6 154 56.5
BraA03t13333Z Brassica rapa HOM05D005148 ORTHO05D006218 2.2e-45 187.6 154 56.5
FAN09G4771 Fragaria x ananassa HOM05D005148 ORTHO05D006218 2.2e-45 187.6 153 57.5
QL06p002269 Quercus lobata HOM05D005148 ORTHO05D006218 2.2e-45 187.6 144 61.1
QL08p012200 Quercus lobata HOM05D005148 ORTHO05D006218 2.2e-45 187.6 144 61.1
BcaC01g03550 Brassica carinata HOM05D005148 ORTHO05D006218 2.9e-45 187.2 154 56.5
BolC3t17407H Brassica oleracea HOM05D005148 ORTHO05D006218 2.9e-45 187.2 154 56.5
FAN16G3277 Fragaria x ananassa HOM05D005148 ORTHO05D006218 2.9e-45 187.2 143 61.5
QL03p062207 Quercus lobata HOM05D005148 ORTHO05D006218 2.9e-45 187.2 144 61.1
COL.COLO4_09623 Corchorus olitorius HOM05D005148 ORTHO05D006218 4.9e-45 186.4 173 54.3
Cfa020393 Carpinus fangiana HOM05D001748 ORTHO05D001759 6.4e-45 186.0 153 56.2
FAN21G2996 Fragaria x ananassa HOM05D005148 ORTHO05D006218 6.4e-45 186.0 143 60.8
Ah.04g165650 Amaranthus hybridus HOM05D001748 ORTHO05D001759 8.4e-45 185.7 170 55.3
Cpa.g.sc97.43 Carica papaya HOM05D005148 ORTHO05D006218 1.4e-44 184.9 154 59.7
arahy.Tifrunner.gnm1.ann1.XKJ78D Arachis hypogaea HOM05D005148 ORTHO05D006218 1.9e-44 184.5 147 59.2
VMungo0540G1829 Vigna mungo HOM05D005148 ORTHO05D006218 5.5e-44 183.0 170 56.5
Cre09.g390430 Chlamydomonas reinhardtii HOM05D005148 ORTHO05D006218 7.1e-44 182.6 182 52.2
Duzib213G0030 Durio zibethinus HOM05D005148 ORTHO05D006218 9.3e-44 182.2 143 60.1
DCAR_019897 Daucus carota HOM05D005148 ORTHO05D006218 2.1e-43 181.0 143 58.0
FAN14G1203 Fragaria x ananassa HOM05D005148 ORTHO05D006218 2.1e-43 181.0 153 54.9
AUR62021649 Chenopodium quinoa HOM05D005148 ORTHO05D006218 3.5e-43 180.3 199 48.2
Oeu007601.1 Olea europaea HOM05D005148 ORTHO05D006218 1.8e-42 177.9 142 55.6
PRCOL_00003554 Prasinoderma coloniale HOM05D005148 ORTHO05D006218 8.1e-40 169.1 151 55.0
Potri.011G136102 Populus trichocarpa HOM05D005148 ORTHO05D006218 1.8e-39 167.9 183 48.1
Haze_06035 Corylus avellana HOM05D001748 ORTHO05D006218 6.5e-37 159.5 173 48.0
TWI38G1498 Tripterygium wilfordii HOM05D005148 ORTHO05D006218 1.4e-36 158.3 120 63.3
Actinidia10720 Actinidia chinensis HOM05D005148 ORTHO05D006218 6.0e-35 152.9 120 56.7
Peaxi162Scf00032g02417 Petunia axillaris HOM05D005148 ORTHO05D006218 6.9e-31 139.4 171 45.0
Aqoxy1G03309 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 1.5e-30 138.3 116 60.3
Aqoxy3G00120 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 1.5e-30 138.3 116 60.3
Gorai.013G161200 Gossypium raimondii HOM05D005148 ORTHO05D006218 2.6e-30 137.5 96 65.6
SMO367G0870 Selaginella moellendorffii HOM05D005148 ORTHO05D006218 2.6e-30 137.5 158 47.5
Gohir.D13G144100 Gossypium hirsutum HOM05D005148 ORTHO05D006218 3.4e-30 137.1 88 70.5
Dinv40732 Davidia involucrata HOM05D005148 ORTHO05D006218 5.9e-30 136.3 119 57.1
Nn1g03595 Nelumbo nucifera HOM05D005148 ORTHO05D006218 7.6e-30 136.0 118 55.9
MELO3C030736.2 Cucumis melo HOM05D005148 ORTHO05D006218 6.5e-29 132.9 104 58.7
MD06G1125500 Malus domestica HOM05D005148 ORTHO05D006218 8.4e-29 132.5 153 45.8
Cfa025954 Carpinus fangiana HOM05D005148 ORTHO05D006218 5.5e-28 129.8 170 44.1
unitig_22.g5751 Utricularia gibba HOM05D005148 ORTHO05D006218 7.9e-27 125.9 154 42.2
FAN11G3177 Fragaria x ananassa HOM05D005148 ORTHO05D006218 1.3e-26 125.2 155 41.9
Haze_09642 Corylus avellana HOM05D005148 ORTHO05D006218 2.3e-26 124.4 102 57.8
Manes.15G074502 Manihot esculenta HOM05D005148 ORTHO05D006218 8.7e-26 122.5 110 54.5
Thhalv10024125m.g Eutrema salsugineum HOM05D005148 ORTHO05D006218 3.7e-24 117.1 105 53.3
Thhalv10011119m.g Eutrema salsugineum HOM05D005148 ORTHO05D006218 3.1e-23 114.0 104 52.9
Rhsim04G0001600 Rhododendron simsii HOM05D005148 ORTHO05D006218 6.5e-21 106.3 147 40.8
ClCG05G014480 Citrullus lanatus HOM05D005148 ORTHO05D006218 1.6e-19 101.7 206 33.0
vmacro09737 Vaccinium macrocarpon HOM05D005148 ORTHO05D006218 1.0e-18 99.0 149 39.6
Sabra16G0285400 Salix brachista HOM05D005148 ORTHO05D006218 4.1e-15 87.0 145 38.6
MCO03G399 Micromonas commoda HOM05D001443 ORTHO05D001352 1.7e-13 81.6 133 35.3
MCO07G024 Micromonas commoda HOM05D001443 ORTHO05D006218 1.4e-12 78.6 159 35.2
Carub.0007s3703 Capsella rubella HOM05D005170 ORTHO05D006985 2.1e-11 74.7 135 33.3
Sp7g03070 Schrenkiella parvula HOM05D005170 ORTHO05D006985 2.7e-11 74.3 156 33.3
Aa31LG9G16850 Aethionema arabicum HOM05D005170 ORTHO05D006985 3.6e-11 73.9 156 30.8
A04p11710 Brassica napus HOM05D005170 ORTHO05D006985 4.7e-11 73.6 125 34.4
BraA04t16838Z Brassica rapa HOM05D005170 ORTHO05D006985 4.7e-11 73.6 125 34.4
BcaC02g09673 Brassica carinata HOM05D005170 ORTHO05D006985 6.1e-11 73.2 125 34.4
C04p45420 Brassica napus HOM05D005170 ORTHO05D006985 6.1e-11 73.2 125 34.4
BolC4t26124H Brassica oleracea HOM05D005170 ORTHO05D006985 6.1e-11 73.2 125 34.4
Medtr7g017500 Medicago truncatula HOM05D005170 ORTHO05D006985 1.0e-10 72.4 130 33.8
AT2G24410 Arabidopsis thaliana HOM05D005148 ORTHO05D006218 1.4e-10 72.0 65 52.3
BcaB06g27252 Brassica carinata HOM05D005170 ORTHO05D006985 1.4e-10 72.0 125 34.4
MCO05G054 Micromonas commoda HOM05D001443 ORTHO05D008506 1.4e-10 72.0 210 26.2
TPR.G3272 Trifolium pratense HOM05D005170 ORTHO05D006985 1.4e-10 72.0 131 33.6
TPR.G13540 Trifolium pratense HOM05D005148 ORTHO05D006218 3.0e-10 70.9 67 50.7
AL7G51600 Arabidopsis lyrata HOM05D005170 ORTHO05D006985 3.9e-10 70.5 164 29.3
Thhalv10027659m.g Eutrema salsugineum HOM05D005170 ORTHO05D006985 3.9e-10 70.5 167 30.5
TPR.G40522 Trifolium pratense HOM05D005148 ORTHO05D006218 3.9e-10 70.5 48 62.5
Haze_09643 Corylus avellana HOM05D005148 ORTHO05D006218 5.1e-10 70.1 77 45.5
AT5G38840 Arabidopsis thaliana HOM05D005170 ORTHO05D006985 6.7e-10 69.7 157 30.6
Rhsim10G0060500 Rhododendron simsii HOM05D005170 ORTHO05D006985 6.7e-10 69.7 167 29.3
C01p18700 Brassica napus HOM05D005148 ORTHO05D006218 8.8e-10 69.3 52 61.5
MELO3C018081.2 Cucumis melo HOM05D005148 ORTHO05D006218 1.1e-09 68.9 77 46.8
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 1.1e-09 68.9 133 34.6
CARHR263780 Cardamine hirsuta HOM05D005170 ORTHO05D006985 3.3e-09 67.4 125 31.2
Hma1.2p1_2186F.1_g316390 Hydrangea macrophylla HOM05D005170 ORTHO05D006985 5.7e-09 66.6 129 31.8
Cre06.g250800 Chlamydomonas reinhardtii HOM05D001443 ORTHO05D001352 9.7e-09 65.9 162 32.7
QL02p064873 Quercus lobata HOM05D005170 ORTHO05D006985 9.7e-09 65.9 132 32.6
MCO03G100 Micromonas commoda HOM05D001443 ORTHO05D268745 1.3e-08 65.5 139 33.1
vmacro05605 Vaccinium macrocarpon HOM05D005170 ORTHO05D006985 2.2e-08 64.7 130 29.2
Cpa.g.sc14.254 Carica papaya HOM05D005170 ORTHO05D006985 2.8e-08 64.3 161 28.6
Pp3c7_11410 Physcomitrium patens HOM05D001443 ORTHO05D001352 3.7e-08 63.9 127 35.4
MCO07G771 Micromonas commoda HOM05D001443 ORTHO05D001352 2.4e-07 61.2 165 30.3
Cre03.g152450 Chlamydomonas reinhardtii HOM05D005170 ORTHO05D006985 1.2e-06 58.9 115 35.7
Zm00001eb239890 Zea mays HOM05D001443 ORTHO05D001352 1.2e-06 58.9 125 32.0
ATR0225G025 Amborella trichopoda HOM05D001443 ORTHO05D001352 2.0e-06 58.2 125 32.8
Zm00001eb205070 Zea mays HOM05D001443 ORTHO05D001352 2.0e-06 58.2 125 31.2
Hma1.2p1_0450F.1_g155610 Hydrangea macrophylla HOM05D001443 ORTHO05D001352 2.6e-06 57.8 128 31.2
Oeu029405.1 Olea europaea HOM05D001443 ORTHO05D001352 2.6e-06 57.8 144 30.6
SalBow7G1995 Salvia bowleyana HOM05D001443 ORTHO05D001352 2.6e-06 57.8 127 33.1
AagrBONN_evm.TU.Sc2ySwM_368.1066 Anthoceros agrestis HOM05D001443 ORTHO05D001352 3.5e-06 57.4 122 30.3
Aqoxy7G01266 Aquilegia oxysepala HOM05D001443 ORTHO05D001352 3.5e-06 57.4 125 30.4
PSO017G2282 Papaver somniferum HOM05D005148 ORTHO05D006218 3.5e-06 57.4 117 29.9
Prupe.8G115800 Prunus persica HOM05D001443 ORTHO05D001352 3.5e-06 57.4 125 32.0
ECA247G3095 Erigeron canadensis HOM05D001443 ORTHO05D001352 4.5e-06 57.0 123 34.1
Mapoly0006s0255 Marchantia polymorpha HOM05D001443 ORTHO05D001352 4.5e-06 57.0 122 30.3
Psat3g194480 Pisum sativum HOM05D005170 ORTHO05D006985 4.5e-06 57.0 79 39.2
HPP92_009208 Vanilla planifolia HOM05D001443 ORTHO05D001352 4.5e-06 57.0 122 34.4
Migut.A00146 Erythranthe guttata HOM05D001443 ORTHO05D001352 7.7e-06 56.2 127 31.5
Oeu036343.1 Olea europaea HOM05D001443 ORTHO05D001352 7.7e-06 56.2 145 32.4
Pp3c11_17830 Physcomitrium patens HOM05D001443 ORTHO05D001352 7.7e-06 56.2 126 30.2
SEGI_30547 Sequoiadendron giganteum HOM05D001443 ORTHO05D001352 7.7e-06 56.2 122 32.0


User provided reference genes

Program Settings