Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G767 Micromonas commoda HOM05D000618 ORTHO05D000454 6.8e-218 760.4 386 100.0
Lsat_1_v5_gn_8_165821 Lactuca sativa HOM05D000618 ORTHO05D000454 1.2e-07 62.0 63 44.4
Manes.04G035900 Manihot esculenta HOM05D000618 ORTHO05D000454 1.2e-07 62.0 156 30.1
Sabra04G0062600 Salix brachista HOM05D000618 ORTHO05D000454 2.0e-07 61.2 62 41.9
ATR0326G063 Amborella trichopoda HOM05D000618 ORTHO05D000454 2.6e-07 60.8 83 38.6
Manes.01G227100 Manihot esculenta HOM05D000618 ORTHO05D000454 2.6e-07 60.8 94 31.9
A02p42320 Brassica napus HOM05D000618 ORTHO05D000454 3.4e-07 60.5 99 34.3
BraA02t09161Z Brassica rapa HOM05D000618 ORTHO05D000454 3.4e-07 60.5 99 34.3
CiPaw.07G116700 Carya illinoinensis HOM05D000618 ORTHO05D000454 3.4e-07 60.5 68 35.3
Dinv10088 Davidia involucrata HOM05D000618 ORTHO05D000454 3.4e-07 60.5 68 39.7
Carub.0005s0026 Capsella rubella HOM05D000618 ORTHO05D000454 4.4e-07 60.1 79 38.0
Potri.004G093500 Populus trichocarpa HOM05D000618 ORTHO05D000454 4.4e-07 60.1 62 41.9
Prupe.1G274900 Prunus persica HOM05D000618 ORTHO05D000454 4.4e-07 60.1 75 34.7
HPP92_005396 Vanilla planifolia HOM05D000618 ORTHO05D000454 4.4e-07 60.1 59 39.0
CDE08G0483 Ceratophyllum demersum HOM05D000618 ORTHO05D000454 5.7e-07 59.7 54 44.4
HanXRQChr15g0464151 Helianthus annuus HOM05D000618 ORTHO05D000454 5.7e-07 59.7 96 36.5
THA.LOC104823916 Tarenaya hassleriana HOM05D000618 ORTHO05D000454 7.5e-07 59.3 55 45.5
unitig_699.g19472 Utricularia gibba HOM05D000618 ORTHO05D000454 7.5e-07 59.3 74 39.2
HPP92_024098 Vanilla planifolia HOM05D000618 ORTHO05D000454 7.5e-07 59.3 83 32.5
AT2G01275 Arabidopsis thaliana HOM05D000618 ORTHO05D000454 9.8e-07 58.9 79 38.0
Nitab4.5_0000889g0060 Nicotiana tabacum HOM05D000618 ORTHO05D000454 9.8e-07 58.9 83 38.6
Psat6g222320 Pisum sativum HOM05D000618 ORTHO05D000454 9.8e-07 58.9 69 39.1
SalBow6G1419 Salvia bowleyana HOM05D000618 ORTHO05D000454 9.8e-07 58.9 90 38.9
Sc24g0003230 Simmondsia chinensis HOM05D000618 ORTHO05D000454 9.8e-07 58.9 62 46.8
Atru.chr11.366 Acer truncatum HOM05D000618 ORTHO05D000454 1.3e-06 58.5 118 32.2
A08p37640 Brassica napus HOM05D000618 ORTHO05D000454 1.3e-06 58.5 103 33.0
BraA08t35660Z Brassica rapa HOM05D000618 ORTHO05D000454 1.3e-06 58.5 103 33.0
BraA09t35813Z Brassica rapa HOM05D000618 ORTHO05D000454 1.3e-06 58.5 70 37.1
Dinv33111 Davidia involucrata HOM05D000618 ORTHO05D000454 1.3e-06 58.5 68 38.2
Medtr8g467220 Medicago truncatula HOM05D000618 ORTHO05D000454 1.3e-06 58.5 58 41.4
Phvul.009G187100 Phaseolus vulgaris HOM05D000618 ORTHO05D000454 1.3e-06 58.5 57 47.4
Zm00001eb167370 Zea mays HOM05D000618 ORTHO05D000454 1.3e-06 58.5 54 40.7
CDE02G4395 Ceratophyllum demersum HOM05D000618 ORTHO05D000454 1.7e-06 58.2 56 42.9
COL.COLO4_20447 Corchorus olitorius HOM05D000618 ORTHO05D000454 1.7e-06 58.2 268 22.0
Duzib138G1146 Durio zibethinus HOM05D000618 ORTHO05D000454 1.7e-06 58.2 71 39.4
Gohir.A03G123500 Gossypium hirsutum HOM05D000618 ORTHO05D000454 1.7e-06 58.2 269 21.2
Nitab4.5_0005587g0110 Nicotiana tabacum HOM05D000618 ORTHO05D000454 1.7e-06 58.2 128 30.5
Potri.008G086300 Populus trichocarpa HOM05D000618 ORTHO05D000454 1.7e-06 58.2 76 35.5
TPR.G39343 Trifolium pratense HOM05D000618 ORTHO05D000454 1.7e-06 58.2 52 42.3
Zm00001eb295020 Zea mays HOM05D000618 ORTHO05D000454 1.7e-06 58.2 66 39.4
MSTRG.13571 Avicennia marina HOM05D000618 ORTHO05D000454 2.2e-06 57.8 51 45.1
MSTRG.18107 Avicennia marina HOM05D000618 ORTHO05D000454 2.2e-06 57.8 68 38.2
MSTRG.21682 Avicennia marina HOM05D000618 ORTHO05D000454 2.2e-06 57.8 64 39.1
BcaB03g13508 Brassica carinata HOM05D000618 ORTHO05D000454 2.2e-06 57.8 98 32.7
CARHR249600 Cardamine hirsuta HOM05D000618 ORTHO05D000454 2.2e-06 57.8 68 36.8
CDE06G0975 Ceratophyllum demersum HOM05D000618 ORTHO05D000454 2.2e-06 57.8 51 47.1
ECA247G0526 Erigeron canadensis HOM05D000618 ORTHO05D000454 2.2e-06 57.8 75 38.7
Glyma.10G265800 Glycine max HOM05D000618 ORTHO05D000454 2.2e-06 57.8 51 45.1
Medtr1g108490 Medicago truncatula HOM05D000618 ORTHO05D000454 2.2e-06 57.8 56 44.6
Sp2g14000 Schrenkiella parvula HOM05D000618 ORTHO05D000454 2.2e-06 57.8 59 40.7
SGA_v2.0_scaffold170G38825 Striga asiatica HOM05D000618 ORTHO05D000454 2.2e-06 57.8 56 41.1
VMungo0720G0474 Vigna mungo HOM05D000618 ORTHO05D000454 2.2e-06 57.8 51 47.1
GSVIVG01038141001 Vitis vinifera HOM05D000618 ORTHO05D000454 2.2e-06 57.8 61 39.3
AL5G10230 Arabidopsis lyrata HOM05D000618 ORTHO05D000454 2.8e-06 57.4 79 36.7
CAN.G625.71 Capsicum annuum HOM05D000618 ORTHO05D000454 2.8e-06 57.4 55 45.5
CAN.G777.7 Capsicum annuum HOM05D000618 ORTHO05D000454 2.8e-06 57.4 105 32.4
ECA233G4941 Erigeron canadensis HOM05D000618 ORTHO05D000454 2.8e-06 57.4 60 40.0
Eucgr.G02211 Eucalyptus grandis HOM05D000618 ORTHO05D000454 2.8e-06 57.4 69 37.7
Lj1A18T25 Lonicera japonica HOM05D000618 ORTHO05D000454 2.8e-06 57.4 85 35.3
Lj9A464T87 Lonicera japonica HOM05D000618 ORTHO05D000454 2.8e-06 57.4 64 42.2
Peaxi162Scf01256g00225 Petunia axillaris HOM05D000618 ORTHO05D000454 2.8e-06 57.4 99 32.3
PGR119G1221 Punica granatum HOM05D000618 ORTHO05D000454 2.8e-06 57.4 84 35.7
QL12p020105 Quercus lobata HOM05D000618 ORTHO05D000454 2.8e-06 57.4 66 36.4
unitig_27.g25174 Utricularia gibba HOM05D000618 ORTHO05D000454 2.8e-06 57.4 57 38.6
unitig_699.g19531 Utricularia gibba HOM05D000618 ORTHO05D000454 2.8e-06 57.4 51 43.1
HPP92_016796 Vanilla planifolia HOM05D000618 ORTHO05D000454 2.8e-06 57.4 56 41.1
HPP92_016828 Vanilla planifolia HOM05D000618 ORTHO05D000454 2.8e-06 57.4 56 41.1
EL10Ac3g06084 Beta vulgaris HOM05D000618 ORTHO05D000454 3.7e-06 57.0 61 41.0
BcaC04g24033 Brassica carinata HOM05D000618 ORTHO05D000454 3.7e-06 57.0 70 35.7
BolC9t53097H Brassica oleracea HOM05D000618 ORTHO05D000454 3.7e-06 57.0 70 35.7
Carub.0006s3515 Capsella rubella HOM05D000618 ORTHO05D000454 3.7e-06 57.0 70 35.7
Dinv05884 Davidia involucrata HOM05D000618 ORTHO05D000454 3.7e-06 57.0 66 37.9
HanXRQChr14g0440431 Helianthus annuus HOM05D000618 ORTHO05D000454 3.7e-06 57.0 72 34.7
Manes.15G154550 Manihot esculenta HOM05D000618 ORTHO05D000454 3.7e-06 57.0 56 44.6
Manes.15G176652 Manihot esculenta HOM05D000618 ORTHO05D000454 3.7e-06 57.0 56 44.6
Potri.008G127400 Populus trichocarpa HOM05D000618 ORTHO05D000454 3.7e-06 57.0 51 47.1
Sabra08G0096200 Salix brachista HOM05D000618 ORTHO05D000454 3.7e-06 57.0 51 45.1
Hund02937 Selenicereus undatus HOM05D000618 ORTHO05D000454 3.7e-06 57.0 76 32.9
SEGI_35293 Sequoiadendron giganteum HOM05D000618 ORTHO05D000454 3.7e-06 57.0 54 40.7
THA.LOC104821422 Tarenaya hassleriana HOM05D000618 ORTHO05D000454 3.7e-06 57.0 51 43.1
AL8G39350 Arabidopsis lyrata HOM05D000618 ORTHO05D000454 4.9e-06 56.6 51 41.2
AT5G62460 Arabidopsis thaliana HOM05D000618 ORTHO05D000454 4.9e-06 56.6 51 41.2
CARHR276250 Cardamine hirsuta HOM05D000618 ORTHO05D000454 4.9e-06 56.6 51 41.2
CDE01G0661 Ceratophyllum demersum HOM05D000618 ORTHO05D000454 4.9e-06 56.6 55 45.5
AUR62005790 Chenopodium quinoa HOM05D000618 ORTHO05D000454 4.9e-06 56.6 56 41.1
AUR62028771 Chenopodium quinoa HOM05D000618 ORTHO05D000454 4.9e-06 56.6 56 41.1
Ciclev10021987m.g Citrus clementina HOM05D000618 ORTHO05D000454 4.9e-06 56.6 73 32.9
DCAR_026762 Daucus carota HOM05D000618 ORTHO05D000454 4.9e-06 56.6 55 41.8
Duzib212G0898 Durio zibethinus HOM05D000618 ORTHO05D000454 4.9e-06 56.6 60 43.3
Phvul.007G036000 Phaseolus vulgaris HOM05D000618 ORTHO05D000454 4.9e-06 56.6 51 47.1
Hund20689 Selenicereus undatus HOM05D000618 ORTHO05D000454 4.9e-06 56.6 86 36.0
unitig_62.g23728 Utricularia gibba HOM05D000618 ORTHO05D000454 4.9e-06 56.6 51 43.1
vmacro01430 Vaccinium macrocarpon HOM05D000618 ORTHO05D000454 4.9e-06 56.6 51 43.1
HPP92_003726 Vanilla planifolia HOM05D000618 ORTHO05D000454 4.9e-06 56.6 83 32.5
VMungo1309G2709 Vigna mungo HOM05D000618 ORTHO05D010195 4.9e-06 56.6 51 49.0
Aa31LG2G8630 Aethionema arabicum HOM05D000618 ORTHO05D000454 6.3e-06 56.2 55 43.6
AL1G11930 Arabidopsis lyrata HOM05D000618 ORTHO05D000454 6.3e-06 56.2 103 32.0
AL1G26140 Arabidopsis lyrata HOM05D000618 ORTHO05D000454 6.3e-06 56.2 52 42.3
arahy.Tifrunner.gnm1.ann1.DXKJ1C Arachis hypogaea HOM05D000618 ORTHO05D000454 6.3e-06 56.2 265 21.5
arahy.Tifrunner.gnm1.ann1.QGG2CX Arachis hypogaea HOM05D000618 ORTHO05D000454 6.3e-06 56.2 265 21.5
BcaB07g29838 Brassica carinata HOM05D000618 ORTHO05D000454 6.3e-06 56.2 51 41.2
BcaC03g18150 Brassica carinata HOM05D000618 ORTHO05D000454 6.3e-06 56.2 98 32.7
A06p29170 Brassica napus HOM05D000618 ORTHO05D000454 6.3e-06 56.2 51 41.2
BraA06t25866Z Brassica rapa HOM05D000618 ORTHO05D000454 6.3e-06 56.2 51 41.2
CSS0006825 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 6.3e-06 56.2 52 44.2
Ca_11102_v3 Cicer arietinum L. HOM05D000618 ORTHO05D000454 6.3e-06 56.2 51 45.1
Dinv09245 Davidia involucrata HOM05D000618 ORTHO05D000454 6.3e-06 56.2 51 45.1
Dinv16192 Davidia involucrata HOM05D000618 ORTHO05D000454 6.3e-06 56.2 51 45.1
Migut.H00257 Erythranthe guttata HOM05D000618 ORTHO05D000454 6.3e-06 56.2 55 43.6
Eucgr.J01539 Eucalyptus grandis HOM05D000618 ORTHO05D000454 6.3e-06 56.2 66 36.4
FAN04G0189 Fragaria x ananassa HOM05D000618 ORTHO05D000454 6.3e-06 56.2 103 33.0
FAN13G2581 Fragaria x ananassa HOM05D000618 ORTHO05D000454 6.3e-06 56.2 103 33.0
FAN22G2196 Fragaria x ananassa HOM05D000618 ORTHO05D000454 6.3e-06 56.2 61 36.1
Gohir.D02G146100 Gossypium hirsutum HOM05D000618 ORTHO05D000454 6.3e-06 56.2 253 21.3
Lj5g0026978 Lotus japonicus HOM05D000618 ORTHO05D000454 6.3e-06 56.2 51 45.1
MD16G1031200 Malus domestica HOM05D000618 ORTHO05D000454 6.3e-06 56.2 52 44.2
Manes.05G002900 Manihot esculenta HOM05D000618 ORTHO05D000454 6.3e-06 56.2 83 33.7
Manes.14G135700 Manihot esculenta HOM05D000618 ORTHO05D000454 6.3e-06 56.2 52 46.2
Os11g0600700 Oryza sativa ssp. japonica HOM05D000618 ORTHO05D000454 6.3e-06 56.2 54 38.9
PSO832G4037 Papaver somniferum HOM05D000618 ORTHO05D000454 6.3e-06 56.2 51 47.1
Peaxi162Scf00691g00017 Petunia axillaris HOM05D000618 ORTHO05D000454 6.3e-06 56.2 67 40.3
SEGI_09250 Sequoiadendron giganteum HOM05D000618 ORTHO05D000454 6.3e-06 56.2 84 34.5
TPR.G4822 Trifolium pratense HOM05D000618 ORTHO05D000454 6.3e-06 56.2 51 45.1
HPP92_011248 Vanilla planifolia HOM05D000618 ORTHO05D000454 6.3e-06 56.2 51 45.1
Zm00001eb244960 Zea mays HOM05D000618 ORTHO05D000454 6.3e-06 56.2 51 43.1
AT1G14260 Arabidopsis thaliana HOM05D000618 ORTHO05D000454 8.3e-06 55.8 52 42.3
A02p31860 Brassica napus HOM05D000618 ORTHO05D000454 8.3e-06 55.8 52 44.2
C02p62190 Brassica napus HOM05D000618 ORTHO05D000454 8.3e-06 55.8 51 41.2
C03p67070 Brassica napus HOM05D000618 ORTHO05D000454 8.3e-06 55.8 90 30.0
C05p12010 Brassica napus HOM05D000618 ORTHO05D000454 8.3e-06 55.8 52 40.4
BraA02t08195Z Brassica rapa HOM05D000618 ORTHO05D000454 8.3e-06 55.8 52 44.2
CANSAT01G1155 Cannabis sativa HOM05D002471 ORTHO05D003712 8.3e-06 55.8 73 37.0
Cpa.g.sc65.110 Carica papaya HOM05D000618 ORTHO05D000454 8.3e-06 55.8 51 43.1
Cc03_g14080 Coffea canephora HOM05D000618 ORTHO05D000454 8.3e-06 55.8 68 36.8
Thhalv10004664m.g Eutrema salsugineum HOM05D000618 ORTHO05D000454 8.3e-06 55.8 51 41.2
FvH4_5g39400 Fragaria vesca HOM05D000618 ORTHO05D000454 8.3e-06 55.8 103 33.0
FAN08G1098 Fragaria x ananassa HOM05D000618 ORTHO05D000454 8.3e-06 55.8 103 33.0
FAN18G0386 Fragaria x ananassa HOM05D000618 ORTHO05D000454 8.3e-06 55.8 103 33.0
Gorai.011G136400 Gossypium raimondii HOM05D000618 ORTHO05D000454 8.3e-06 55.8 110 32.7
Lalb_Chr21g0308521 Lupinus albus HOM05D000618 ORTHO05D000454 8.3e-06 55.8 51 43.1
MBI19_g46781_MAGBIO Magnolia biondii HOM05D000618 ORTHO05D000454 8.3e-06 55.8 58 41.4
Nitab4.5_0003598g0040 Nicotiana tabacum HOM05D000618 ORTHO05D000454 8.3e-06 55.8 55 43.6
Oeu004308.2 Olea europaea HOM05D000618 ORTHO05D000454 8.3e-06 55.8 51 43.1
RcHm_v2.0_Chr7g0241671 Rosa chinensis HOM05D000618 ORTHO05D000454 8.3e-06 55.8 107 33.6
Sp2g12740 Schrenkiella parvula HOM05D000618 ORTHO05D000454 8.3e-06 55.8 55 41.8
Sp2g25640 Schrenkiella parvula HOM05D000618 ORTHO05D000454 8.3e-06 55.8 51 41.2


User provided reference genes

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