Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 7.0e-205 717.2 408 100.0
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 4.4e-50 203.0 408 36.3
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 4.9e-49 199.5 412 37.9
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 5.4e-48 196.1 408 36.3
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 7.1e-48 195.7 410 33.9
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 7.1e-48 195.7 420 36.4
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 7.1e-48 195.7 424 36.6
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 7.1e-48 195.7 420 36.2
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 1.2e-47 194.9 409 35.9
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 2.1e-47 194.1 410 35.9
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 4.6e-47 193.0 420 36.0
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 4.6e-47 193.0 420 36.0
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 4.6e-47 193.0 408 35.3
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 6.0e-47 192.6 408 35.8
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 7.8e-47 192.2 408 35.8
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 1.0e-46 191.8 415 35.4
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 1.0e-46 191.8 409 36.4
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 6.6e-46 189.1 408 35.3
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 1.5e-45 188.0 407 34.6
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 4.3e-45 186.4 411 34.1
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 9.6e-45 185.3 407 34.4
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 3.6e-44 183.3 420 32.6
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 8.1e-44 182.2 412 35.4
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 8.1e-44 182.2 407 34.4
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 1.1e-43 181.8 408 34.8
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 1.1e-43 181.8 407 34.6
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.4e-43 181.4 427 34.0
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 2.4e-43 180.6 394 35.0
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 3.1e-43 180.3 407 34.2
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 6.9e-43 179.1 411 34.1
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 6.9e-43 179.1 408 34.3
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 6.9e-43 179.1 407 33.4
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 6.9e-43 179.1 408 34.8
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 9.0e-43 178.7 411 34.1
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 1.5e-42 177.9 409 33.7
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 1.5e-42 177.9 409 35.0
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 2.6e-42 177.2 411 34.1
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 4.4e-42 176.4 407 33.2
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 4.4e-42 176.4 409 35.0
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 5.8e-42 176.0 409 33.7
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.6e-42 175.6 413 34.9
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.6e-42 175.6 413 34.9
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 9.9e-42 175.3 407 34.2
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 1.7e-41 174.5 407 34.2
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 1.7e-41 174.5 413 34.6
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 1.7e-41 174.5 416 32.9
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 2.2e-41 174.1 412 34.0
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.2e-41 174.1 413 34.6
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.2e-41 174.1 413 34.6
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 2.2e-41 174.1 409 34.5
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 2.9e-41 173.7 409 34.5
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 2.9e-41 173.7 407 34.2
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.8e-41 173.3 413 34.1
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 3.8e-41 173.3 411 34.1
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 3.8e-41 173.3 413 35.1
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 4.9e-41 172.9 413 34.4
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 6.4e-41 172.6 407 33.9
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 6.4e-41 172.6 408 31.9
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 8.4e-41 172.2 415 34.0
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 2.4e-40 170.6 407 33.4
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 2.4e-40 170.6 410 33.7
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 2.4e-40 170.6 411 33.3
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 2.4e-40 170.6 407 33.2
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 3.2e-40 170.2 416 33.2
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 4.2e-40 169.9 407 33.4
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 5.4e-40 169.5 407 32.7
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 7.1e-40 169.1 408 33.3
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 9.3e-40 168.7 424 33.7
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 1.2e-39 168.3 407 33.4
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 1.6e-39 167.9 407 33.2
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 2.1e-39 167.5 417 33.3
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 2.1e-39 167.5 409 32.8
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 2.7e-39 167.2 425 32.7
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 4.6e-39 166.4 407 33.2
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 6.0e-39 166.0 421 32.3
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 6.0e-39 166.0 408 33.1
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 1.3e-38 164.9 391 33.2
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 1.3e-38 164.9 409 34.0
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 1.3e-38 164.9 409 33.5
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 1.3e-38 164.9 407 32.7
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 1.7e-38 164.5 407 33.2
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 1.7e-38 164.5 407 33.4
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 2.3e-38 164.1 407 33.4
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 3.0e-38 163.7 424 33.0
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 3.9e-38 163.3 407 32.9
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 3.9e-38 163.3 411 33.3
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 5.1e-38 162.9 413 32.0
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 6.6e-38 162.5 407 32.4
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 8.7e-38 162.2 418 33.3
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 1.9e-37 161.0 412 33.7
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 1.9e-37 161.0 438 32.2
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 4.3e-37 159.8 411 32.1
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 5.6e-37 159.5 409 33.3
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 9.6e-37 158.7 371 33.4
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 1.6e-36 157.9 330 34.8
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 4.0e-35 153.3 401 33.2
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 2.9e-33 147.1 379 32.2
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 2.9e-33 147.1 395 33.4
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 1.1e-32 145.2 388 33.0
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 7.1e-32 142.5 461 30.4
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 2.1e-31 141.0 410 31.2
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 2.7e-31 140.6 379 32.5
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 3.5e-31 140.2 416 31.7
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 1.1e-27 128.6 309 33.3
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 4.2e-24 116.7 538 25.7
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.0e-22 112.1 253 34.0
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 1.1e-21 108.6 168 43.5
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 1.5e-21 108.2 439 28.0
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 4.3e-21 106.7 289 31.1
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 7.4e-21 105.9 257 33.5
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 4.5e-18 96.7 133 46.6
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 1.4e-16 91.7 136 44.1
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 1.9e-16 91.3 85 55.3
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 4.2e-16 90.1 85 56.5
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 5.5e-16 89.7 151 39.7
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 3.5e-15 87.0 166 31.3
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.0e-14 85.5 184 31.5
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 8.7e-14 82.4 418 25.8
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 5.9e-10 69.7 71 49.3
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 1.0e-06 58.9 289 27.7


User provided reference genes

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