Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G482 Micromonas commoda HOM05D001443 ORTHO05D001352 0.0e+00 1837.4 1139 100.0
Pp3c11_17830 Physcomitrium patens HOM05D001443 ORTHO05D001352 8.4e-14 84.0 293 26.3
Pp3c7_11410 Physcomitrium patens HOM05D001443 ORTHO05D001352 2.4e-13 82.4 264 28.0
SMO364G0321 Selaginella moellendorffii HOM05D001443 ORTHO05D001352 1.2e-12 80.1 275 28.0
Mapoly0006s0255 Marchantia polymorpha HOM05D001443 ORTHO05D001352 1.0e-11 77.0 269 27.1
EL10Ac9g21812 Beta vulgaris HOM05D001443 ORTHO05D001352 3.9e-11 75.1 286 26.9
CBR_g24302 Chara braunii HOM05D001443 ORTHO05D001352 4.3e-10 71.6 337 25.2
PRCOL_00000437 Prasinoderma coloniale HOM05D001443 ORTHO05D001352 2.1e-09 69.3 310 23.5
C02p01930 Brassica napus HOM05D003445 ORTHO05D004114 3.6e-09 68.6 309 26.5
BolC2t06150H Brassica oleracea HOM05D003445 ORTHO05D004114 3.6e-09 68.6 309 26.5
ECA233G0783 Erigeron canadensis HOM05D001443 ORTHO05D001352 1.1e-08 67.0 131 34.4
BcaB05g21762 Brassica carinata HOM05D003445 ORTHO05D004114 1.4e-08 66.6 297 26.6
BcaC03g12945 Brassica carinata HOM05D003445 ORTHO05D004114 1.4e-08 66.6 298 26.8
Aa31LG11G5300 Aethionema arabicum HOM05D003445 ORTHO05D004114 2.4e-08 65.9 293 27.0
BraA02t04812Z Brassica rapa HOM05D003445 ORTHO05D004114 3.1e-08 65.5 286 26.6
Nitab4.5_0001179g0110 Nicotiana tabacum HOM05D001443 ORTHO05D001352 3.1e-08 65.5 112 36.6
Nitab4.5_0001584g0060 Nicotiana tabacum HOM05D001443 ORTHO05D001352 3.1e-08 65.5 112 35.7
AT5G04430 Arabidopsis thaliana HOM05D003445 ORTHO05D004114 5.3e-08 64.7 297 26.6
BcaC06g32151 Brassica carinata HOM05D003445 ORTHO05D004114 5.3e-08 64.7 278 25.5
Thhalv10014068m.g Eutrema salsugineum HOM05D003445 ORTHO05D004114 5.3e-08 64.7 277 27.1
Peaxi162Scf00136g00623 Petunia axillaris HOM05D001443 ORTHO05D001352 6.9e-08 64.3 100 36.0
Sp6g38310 Schrenkiella parvula HOM05D003445 ORTHO05D004114 6.9e-08 64.3 286 25.9
A10p31650 Brassica napus HOM05D003445 ORTHO05D004114 9.0e-08 63.9 298 25.8
C09p72320 Brassica napus HOM05D003445 ORTHO05D004114 9.0e-08 63.9 283 25.8
BolC9t59976H Brassica oleracea HOM05D003445 ORTHO05D004114 9.0e-08 63.9 298 25.8
BraA10t45211Z Brassica rapa HOM05D003445 ORTHO05D004114 9.0e-08 63.9 298 25.8
Lalb_Chr22g0356061 Lupinus albus HOM05D001443 ORTHO05D001352 9.0e-08 63.9 88 40.9
THA.LOC104818574 Tarenaya hassleriana HOM05D001443 ORTHO05D001352 9.0e-08 63.9 121 33.9
BcaB01g05898 Brassica carinata HOM05D003445 ORTHO05D004114 1.5e-07 63.2 290 24.8
Lsat_1_v5_gn_4_77561 Lactuca sativa HOM05D001443 ORTHO05D001352 1.5e-07 63.2 77 41.6
Manes.16G078700 Manihot esculenta HOM05D001443 ORTHO05D001352 1.5e-07 63.2 68 42.6
Phvul.009G076600 Phaseolus vulgaris HOM05D001443 ORTHO05D001352 1.5e-07 63.2 75 40.0
SEGI_30547 Sequoiadendron giganteum HOM05D001443 ORTHO05D001352 1.5e-07 63.2 112 35.7
Sc09g0009730 Simmondsia chinensis HOM05D001443 ORTHO05D001352 1.5e-07 63.2 91 36.3
ATR0225G025 Amborella trichopoda HOM05D001443 ORTHO05D001352 2.0e-07 62.8 67 43.3
A03p01680 Brassica napus HOM05D003445 ORTHO05D004114 2.0e-07 62.8 290 24.8
C03p02050 Brassica napus HOM05D003445 ORTHO05D004114 2.0e-07 62.8 290 24.8
BolC3t12758H Brassica oleracea HOM05D003445 ORTHO05D004114 2.0e-07 62.8 290 24.8
BraA03t09543Z Brassica rapa HOM05D003445 ORTHO05D004114 2.0e-07 62.8 290 24.8
CAN.G208.76 Capsicum annuum HOM05D001443 ORTHO05D001352 2.0e-07 62.8 99 35.4
CARHR208830 Cardamine hirsuta HOM05D003445 ORTHO05D004114 2.0e-07 62.8 283 25.1
CiPaw.16G029500 Carya illinoinensis HOM05D001443 ORTHO05D001352 2.0e-07 62.8 79 36.7
Peaxi162Scf00064g01629 Petunia axillaris HOM05D001443 ORTHO05D001352 2.0e-07 62.8 149 30.2
QL02p001442 Quercus lobata HOM05D001443 ORTHO05D001352 2.0e-07 62.8 118 35.6
THA.LOC104804517 Tarenaya hassleriana HOM05D001443 ORTHO05D001352 2.0e-07 62.8 121 33.1
VMungo1309G3077 Vigna mungo HOM05D001443 ORTHO05D001352 2.0e-07 62.8 75 40.0
AagrBONN_evm.TU.Sc2ySwM_368.1066 Anthoceros agrestis HOM05D001443 ORTHO05D001352 2.6e-07 62.4 67 43.3
Cpa.g.sc53.166 Carica papaya HOM05D003445 ORTHO05D004114 2.6e-07 62.4 307 24.8
Lsat_1_v5_gn_6_13221 Lactuca sativa HOM05D001443 ORTHO05D001352 2.6e-07 62.4 89 38.2
Lsat_1_v5_gn_7_72301 Lactuca sativa HOM05D001443 ORTHO05D001352 2.6e-07 62.4 67 44.8
Medtr1g016760 Medicago truncatula HOM05D001443 ORTHO05D001352 2.6e-07 62.4 75 38.7
Nitab4.5_0000738g0120 Nicotiana tabacum HOM05D001443 ORTHO05D001352 2.6e-07 62.4 122 33.6
Nitab4.5_0009587g0010 Nicotiana tabacum HOM05D001443 ORTHO05D001352 2.6e-07 62.4 122 33.6
AL6G14070 Arabidopsis lyrata HOM05D003445 ORTHO05D004114 3.4e-07 62.0 297 26.3
Lj8C550G1 Lonicera japonica HOM05D001443 ORTHO05D001352 3.4e-07 62.0 90 35.6
HPP92_009208 Vanilla planifolia HOM05D001443 ORTHO05D001352 3.4e-07 62.0 163 30.1
arahy.Tifrunner.gnm1.ann1.7QGM13 Arachis hypogaea HOM05D001443 ORTHO05D001352 4.5e-07 61.6 112 34.8
Carub.0006s0337 Capsella rubella HOM05D003445 ORTHO05D004114 4.5e-07 61.6 297 25.6
Haze_18206 Corylus avellana HOM05D001443 ORTHO05D001352 4.5e-07 61.6 94 36.2
Thhalv10001945m.g Eutrema salsugineum HOM05D001443 ORTHO05D001352 4.5e-07 61.6 130 30.8
Gohir.D06G176400 Gossypium hirsutum HOM05D003445 ORTHO05D004114 4.5e-07 61.6 277 24.9
Gorai.010G207600 Gossypium raimondii HOM05D003445 ORTHO05D004114 4.5e-07 61.6 269 25.7
TWI79G1009 Tripterygium wilfordii HOM05D001443 ORTHO05D001352 4.5e-07 61.6 77 40.3
Aqoxy2G01633 Aquilegia oxysepala HOM05D003445 ORTHO05D004114 5.8e-07 61.2 288 27.4
arahy.Tifrunner.gnm1.ann1.1JP5NC Arachis hypogaea HOM05D001443 ORTHO05D001352 5.8e-07 61.2 145 33.8
Carub.0004s0582 Capsella rubella HOM05D001443 ORTHO05D001352 5.8e-07 61.2 121 33.9
Potri.006G231800 Populus trichocarpa HOM05D001443 ORTHO05D001352 5.8e-07 61.2 67 43.3
SGA_v2.0_scaffold88G27221 Striga asiatica HOM05D001443 ORTHO05D001352 5.8e-07 61.2 67 38.8
Dinv23429 Davidia involucrata HOM05D001443 ORTHO05D001352 7.6e-07 60.8 67 41.8
Manes.16G078600 Manihot esculenta HOM05D001443 ORTHO05D001352 7.6e-07 60.8 68 41.2
Psat6g019480 Pisum sativum HOM05D001443 ORTHO05D001352 7.6e-07 60.8 75 37.3
CANSAT25G1997 Cannabis sativa HOM05D001443 ORTHO05D001352 9.9e-07 60.5 67 44.8
Cfa017942 Carpinus fangiana HOM05D001443 ORTHO05D001352 9.9e-07 60.5 67 41.8
Nn4g25459 Nelumbo nucifera HOM05D001443 ORTHO05D001352 9.9e-07 60.5 100 34.0
Potri.018G055300 Populus trichocarpa HOM05D001443 ORTHO05D001352 9.9e-07 60.5 67 41.8
Rhsim08G0115800 Rhododendron simsii HOM05D001443 ORTHO05D001352 9.9e-07 60.5 77 41.6
Sabra18G0049800 Salix brachista HOM05D001443 ORTHO05D001352 9.9e-07 60.5 67 41.8
TAR383G0280 Trochodendron aralioides HOM05D001443 ORTHO05D001352 9.9e-07 60.5 79 35.4
VMungo1309G2260 Vigna mungo HOM05D001443 ORTHO05D001352 9.9e-07 60.5 75 38.7
Actinidia14705 Actinidia chinensis HOM05D001443 ORTHO05D001352 1.3e-06 60.1 67 41.8
arahy.Tifrunner.gnm1.ann1.WC628Y Arachis hypogaea HOM05D001443 ORTHO05D001352 1.3e-06 60.1 145 33.8
Cpa.g.sc7.199 Carica papaya HOM05D001443 ORTHO05D001352 1.3e-06 60.1 67 41.8
Cc10_g08730 Coffea canephora HOM05D001443 ORTHO05D001352 1.3e-06 60.1 79 36.7
HanXRQChr07g0189741 Helianthus annuus HOM05D001443 ORTHO05D001352 1.3e-06 60.1 157 28.0
Lalb_Chr24g0399611 Lupinus albus HOM05D001443 ORTHO05D001352 1.3e-06 60.1 74 39.2
Sabra06G0179800 Salix brachista HOM05D001443 ORTHO05D001352 1.3e-06 60.1 111 31.5
TPR.G13013 Trifolium pratense HOM05D001443 ORTHO05D001352 1.3e-06 60.1 75 37.3
TWI34G1891 Tripterygium wilfordii HOM05D001443 ORTHO05D001352 1.3e-06 60.1 67 41.8
Aqoxy7G01266 Aquilegia oxysepala HOM05D001443 ORTHO05D001352 1.7e-06 59.7 143 28.7
Duzib150G1159 Durio zibethinus HOM05D001443 ORTHO05D001352 1.7e-06 59.7 102 34.3
ECA240G2406 Erigeron canadensis HOM05D001443 ORTHO05D001352 1.7e-06 59.7 67 43.3
Gohir.A06G168900 Gossypium hirsutum HOM05D003445 ORTHO05D004114 1.7e-06 59.7 268 25.4
Gohir.D05G045000 Gossypium hirsutum HOM05D001443 ORTHO05D001352 1.7e-06 59.7 94 34.0
Gorai.009G046100 Gossypium raimondii HOM05D001443 ORTHO05D001352 1.7e-06 59.7 94 34.0
Hma1.2p1_0482F.1_g162670 Hydrangea macrophylla HOM05D001443 ORTHO05D001352 1.7e-06 59.7 67 43.3
Hma1.2p1_0482F.1_g162680 Hydrangea macrophylla HOM05D001443 ORTHO05D001352 1.7e-06 59.7 67 43.3
Hma1.2p1_1944F.1_g308603 Hydrangea macrophylla HOM05D001443 ORTHO05D001352 1.7e-06 59.7 67 43.3
CSS0046346 Camellia sinensis var. sinensis HOM05D001443 ORTHO05D001352 2.2e-06 59.3 67 40.3
Dinv42119 Davidia involucrata HOM05D001443 ORTHO05D001352 2.2e-06 59.3 118 32.2
Eucgr.C03020 Eucalyptus grandis HOM05D001443 ORTHO05D001352 2.2e-06 59.3 67 41.8
CDE07G0803 Ceratophyllum demersum HOM05D001443 ORTHO05D001352 2.9e-06 58.9 67 40.3
Glyma.06G051200 Glycine max HOM05D001443 ORTHO05D001352 2.9e-06 58.9 74 39.2
Gohir.A05G043300 Gossypium hirsutum HOM05D001443 ORTHO05D001352 2.9e-06 58.9 67 41.8
Lj7C280G0 Lonicera japonica HOM05D001443 ORTHO05D001352 2.9e-06 58.9 117 31.6
Lj7C421G5 Lonicera japonica HOM05D001443 ORTHO05D001352 2.9e-06 58.9 107 30.8
Lju3103C0G13 Lonicera japonica HOM05D001443 ORTHO05D001352 2.9e-06 58.9 117 31.6
Oeu036343.1 Olea europaea HOM05D001443 ORTHO05D001352 2.9e-06 58.9 67 41.8
PGR044G0673 Punica granatum HOM05D001443 ORTHO05D001352 2.9e-06 58.9 67 41.8
Sed0027567 Sechium edule HOM05D001443 ORTHO05D001352 2.9e-06 58.9 87 35.6
Solyc12g095960.3 Solanum lycopersicum HOM05D001443 ORTHO05D001352 2.9e-06 58.9 203 28.1
Sopen12g031850 Solanum pennellii HOM05D001443 ORTHO05D001352 2.9e-06 58.9 203 28.1
THA.LOC104823197 Tarenaya hassleriana HOM05D003445 ORTHO05D004114 2.9e-06 58.9 294 25.2
THA.LOC104826969 Tarenaya hassleriana HOM05D003445 ORTHO05D004114 2.9e-06 58.9 278 24.1
Cfa001777 Carpinus fangiana HOM05D003445 ORTHO05D004114 3.8e-06 58.5 287 25.1
Glyma.17G230300 Glycine max HOM05D001443 ORTHO05D001352 3.8e-06 58.5 67 40.3
Lsat_1_v5_gn_1_25041 Lactuca sativa HOM05D001443 ORTHO05D001352 3.8e-06 58.5 67 41.8
Lalb_Chr14g0367811 Lupinus albus HOM05D001443 ORTHO05D001352 3.8e-06 58.5 67 40.3
QL11p038602 Quercus lobata HOM05D001443 ORTHO05D001352 3.8e-06 58.5 67 43.3
Sc26g0002200 Simmondsia chinensis HOM05D001443 ORTHO05D001352 3.8e-06 58.5 83 33.7
TAR626G0821 Trochodendron aralioides HOM05D001229 ORTHO05D001352 3.8e-06 58.5 100 32.0
Zm00001eb239890 Zea mays HOM05D001443 ORTHO05D001352 3.8e-06 58.5 74 36.5
Aqoxy1G01069 Aquilegia oxysepala HOM05D003445 ORTHO05D004114 4.9e-06 58.2 317 24.9
Aqoxy5G01427 Aquilegia oxysepala HOM05D001443 ORTHO05D001352 4.9e-06 58.2 135 30.4
CAN.G227.12 Capsicum annuum HOM05D001443 ORTHO05D001352 4.9e-06 58.2 120 32.5
Ca_10454_v3 Cicer arietinum L. HOM05D003445 ORTHO05D004114 4.9e-06 58.2 286 24.5
Ca_13178_v3 Cicer arietinum L. HOM05D001443 ORTHO05D001352 4.9e-06 58.2 75 36.0
HanXRQChr13g0410681 Helianthus annuus HOM05D001443 ORTHO05D001352 4.9e-06 58.2 85 37.6
MBI16_g19908_MAGBIO Magnolia biondii HOM05D001443 ORTHO05D001352 4.9e-06 58.2 115 31.3
Nn6g35202 Nelumbo nucifera HOM05D003445 ORTHO05D004114 4.9e-06 58.2 290 25.5
Psat6g173360 Pisum sativum HOM05D003445 ORTHO05D004114 4.9e-06 58.2 282 24.8
Hund09167 Selenicereus undatus HOM05D001443 ORTHO05D001352 4.9e-06 58.2 101 35.6
PGSC0003DMG400029301 Solanum tuberosum HOM05D001443 ORTHO05D001352 4.9e-06 58.2 184 28.3
AL4G18040 Arabidopsis lyrata HOM05D001443 ORTHO05D001352 6.4e-06 57.8 67 40.3
CDE06G2332 Ceratophyllum demersum HOM05D001443 ORTHO05D001352 6.4e-06 57.8 67 40.3
Cc08_g10400 Coffea canephora HOM05D001443 ORTHO05D001352 6.4e-06 57.8 98 32.7
DCAR_003086 Daucus carota HOM05D001443 ORTHO05D001352 6.4e-06 57.8 67 40.3
Dinv27972 Davidia involucrata HOM05D001443 ORTHO05D001352 6.4e-06 57.8 176 27.3
Lj1g0011088 Lotus japonicus HOM05D001443 ORTHO05D001352 6.4e-06 57.8 67 40.3
PSO832G3656 Papaver somniferum HOM05D001443 ORTHO05D001352 6.4e-06 57.8 74 39.2
PGSC0003DMG400002210 Solanum tuberosum HOM05D001443 ORTHO05D001352 6.4e-06 57.8 94 36.2
GSVIVG01035354001 Vitis vinifera HOM05D001443 ORTHO05D001352 6.4e-06 57.8 189 25.9
Actinidia29385 Actinidia chinensis HOM05D001443 ORTHO05D001352 8.4e-06 57.4 85 35.3
CARHR194380 Cardamine hirsuta HOM05D001443 ORTHO05D001352 8.4e-06 57.4 83 36.1
CiPaw.02G170100 Carya illinoinensis HOM05D003445 ORTHO05D004114 8.4e-06 57.4 273 26.0
Cre06.g250800 Chlamydomonas reinhardtii HOM05D001443 ORTHO05D001352 8.4e-06 57.4 86 39.5
MELO3C010761.2 Cucumis melo HOM05D001443 ORTHO05D001352 8.4e-06 57.4 67 40.3
CsaV3_2G025660 Cucumis sativus L. HOM05D001443 ORTHO05D001352 8.4e-06 57.4 67 40.3
Duzib168G0433 Durio zibethinus HOM05D001443 ORTHO05D001352 8.4e-06 57.4 67 40.3
Migut.A00146 Erythranthe guttata HOM05D001443 ORTHO05D001352 8.4e-06 57.4 67 40.3
Migut.E01558 Erythranthe guttata HOM05D001443 ORTHO05D001352 8.4e-06 57.4 67 40.3
Hma1.2p1_0450F.1_g155610 Hydrangea macrophylla HOM05D001443 ORTHO05D001352 8.4e-06 57.4 67 41.8
Medtr1g090773 Medicago truncatula HOM05D003445 ORTHO05D004114 8.4e-06 57.4 282 24.5
Phvul.009G076800 Phaseolus vulgaris HOM05D001443 ORTHO05D001352 8.4e-06 57.4 67 40.3


User provided reference genes

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