Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 7.1e-193 677.2 334 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 3.2e-108 396.0 329 61.4
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 3.2e-108 396.0 352 58.2
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 5.4e-108 395.2 339 59.3
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 5.1e-106 388.7 337 58.2
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 8.7e-106 387.9 336 58.3
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.1e-105 387.5 337 59.6
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 1.1e-105 387.5 336 58.0
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 3.3e-105 386.0 336 58.0
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 5.6e-105 385.2 336 57.7
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 9.6e-105 384.4 339 59.0
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 9.6e-105 384.4 336 58.9
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 1.2e-104 384.0 336 59.2
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 3.6e-104 382.5 335 56.4
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 4.7e-104 382.1 336 58.6
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 8.1e-104 381.3 335 56.1
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 8.1e-104 381.3 335 56.1
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 8.1e-104 381.3 338 58.3
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 8.1e-104 381.3 337 56.7
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 1.1e-103 380.9 335 56.1
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 1.1e-103 380.9 337 57.6
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 1.4e-103 380.6 335 56.1
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 2.4e-103 379.8 337 56.1
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 2.4e-103 379.8 337 57.0
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 3.1e-103 379.4 337 55.8
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 3.1e-103 379.4 337 55.8
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 3.1e-103 379.4 337 58.2
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 3.1e-103 379.4 339 57.2
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 4.0e-103 379.0 339 57.8
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 6.9e-103 378.3 337 56.7
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 9.0e-103 377.9 337 56.7
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 9.0e-103 377.9 337 55.5
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 9.0e-103 377.9 350 56.0
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 9.0e-103 377.9 327 58.7
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 9.0e-103 377.9 327 58.7
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 9.0e-103 377.9 337 56.7
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 9.0e-103 377.9 337 55.8
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 1.2e-102 377.5 337 55.8
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 1.2e-102 377.5 337 55.8
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 1.2e-102 377.5 337 55.8
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.2e-102 377.5 337 56.7
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 1.5e-102 377.1 347 56.5
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 1.5e-102 377.1 342 55.0
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 2.0e-102 376.7 337 55.5
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 2.0e-102 376.7 337 55.5
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 2.0e-102 376.7 337 55.5
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 2.6e-102 376.3 337 55.5
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 2.6e-102 376.3 335 56.1
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 2.6e-102 376.3 335 56.1
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 2.6e-102 376.3 339 56.0
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 2.6e-102 376.3 337 57.3
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 3.4e-102 375.9 337 56.1
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 4.4e-102 375.6 335 55.8
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 4.4e-102 375.6 337 55.8
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 5.8e-102 375.2 337 55.8
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 7.6e-102 374.8 337 56.1
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 9.9e-102 374.4 337 56.1
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 1.3e-101 374.0 337 56.1
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.3e-101 374.0 339 56.0
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 1.7e-101 373.6 337 56.7
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.7e-101 373.6 337 56.4
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.7e-101 373.6 332 56.6
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.7e-101 373.6 332 56.6
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 1.7e-101 373.6 332 56.6
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 1.7e-101 373.6 337 56.7
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 2.2e-101 373.2 337 56.4
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.2e-101 373.2 337 56.4
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.2e-101 373.2 337 56.4
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 2.2e-101 373.2 339 56.0
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.2e-101 373.2 337 56.4
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 2.9e-101 372.9 337 55.8
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 2.9e-101 372.9 337 55.8
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.9e-101 372.9 337 56.7
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 3.8e-101 372.5 347 55.9
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 3.8e-101 372.5 337 55.8
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 3.8e-101 372.5 337 56.1
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 3.8e-101 372.5 337 56.1
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 3.8e-101 372.5 337 55.8
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 4.9e-101 372.1 335 56.4
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 4.9e-101 372.1 335 56.7
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 6.4e-101 371.7 338 56.2
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 6.4e-101 371.7 337 56.7
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 6.4e-101 371.7 337 55.8
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 6.4e-101 371.7 337 55.5
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 1.1e-100 370.9 337 56.4
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 1.1e-100 370.9 337 56.4
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 1.1e-100 370.9 337 55.8
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 1.4e-100 370.5 344 54.4
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 1.4e-100 370.5 337 56.1
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 1.4e-100 370.5 334 56.9
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 1.9e-100 370.2 335 56.7
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 2.4e-100 369.8 332 56.0
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 3.2e-100 369.4 338 56.2
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 4.2e-100 369.0 337 55.2
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.2e-100 369.0 337 55.2
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 4.2e-100 369.0 334 56.9
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 5.4e-100 368.6 337 55.2
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 5.4e-100 368.6 337 55.2
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.4e-100 368.6 337 55.5
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 9.3e-100 367.9 337 55.2
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.2e-99 367.5 337 54.9
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 1.6e-99 367.1 349 54.7
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 2.7e-99 366.3 327 56.0
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 2.7e-99 366.3 337 55.5
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 4.6e-99 365.5 337 56.1
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 4.6e-99 365.5 337 55.2
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 4.6e-99 365.5 341 55.7
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 6.0e-99 365.2 337 55.5
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 3.0e-98 362.8 337 55.5
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 3.0e-98 362.8 337 55.2
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 6.6e-98 361.7 285 61.4
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 1.5e-97 360.5 337 55.5
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 2.5e-97 359.8 321 57.9
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 4.3e-97 359.0 280 62.9
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 7.3e-97 358.2 332 54.5
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 7.3e-97 358.2 350 54.3
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 3.6e-96 355.9 280 62.5
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 4.8e-96 355.5 384 50.5
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 6.2e-96 355.1 280 61.8
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 2.0e-94 350.1 382 49.7
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 2.9e-93 346.3 342 52.3
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 1.4e-92 344.0 405 47.9
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 5.4e-92 342.0 314 55.7
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 6.0e-91 338.6 280 59.3
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.8e-90 337.0 337 53.1
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 5.1e-90 335.5 353 50.7
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 8.7e-90 334.7 341 53.1
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 1.5e-89 334.0 339 50.4
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 9.0e-87 324.7 334 51.2
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 1.5e-86 323.9 292 57.5
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 2.6e-86 323.2 295 55.9
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.2e-85 320.1 327 52.9
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 2.4e-84 316.6 341 49.3
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 9.6e-81 304.7 326 50.9
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 4.0e-79 299.3 367 46.9
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 1.3e-74 284.3 337 46.9
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 1.8e-74 283.9 263 56.7
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 6.3e-72 275.4 269 53.5
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 3.4e-70 269.6 195 66.2
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.3e-66 256.9 284 50.4
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.0e-66 256.5 336 42.3
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.3e-65 253.1 313 47.0
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 2.9e-61 240.0 232 55.6
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 5.0e-61 239.2 377 40.1
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.9e-60 237.3 308 45.1
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 4.2e-60 236.1 165 68.5
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.7e-56 224.2 292 44.9
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.3e-37 161.4 118 71.2
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 2.0e-25 120.9 81 67.9
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.3e-21 108.2 335 28.1
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 7.0e-15 85.9 114 40.4
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 3.6e-11 73.6 104 39.4
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 4.0e-10 70.1 209 26.8
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 1.5e-09 68.2 100 41.0
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 3.4e-09 67.0 87 39.1
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 3.4e-09 67.0 87 39.1


User provided reference genes

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