Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 1.0e-162 576.6 282 100.0
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 1.4e-58 230.7 117 99.1
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 2.6e-57 226.5 286 45.5
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 2.2e-56 223.4 290 45.5
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 4.3e-52 209.1 294 43.2
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 7.6e-49 198.4 287 40.1
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 1.1e-47 194.5 284 41.9
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 1.4e-47 194.1 283 41.7
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 2.4e-47 193.4 288 40.6
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 2.4e-47 193.4 287 41.8
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 7.1e-47 191.8 287 41.8
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 7.1e-47 191.8 283 41.7
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 7.1e-47 191.8 288 41.7
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 9.2e-47 191.4 284 41.2
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 3.5e-46 189.5 291 42.6
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 7.8e-46 188.3 284 42.6
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 7.8e-46 188.3 274 43.4
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 1.0e-45 188.0 289 41.2
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 1.0e-45 188.0 279 41.6
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 1.3e-45 187.6 284 41.2
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 1.7e-45 187.2 281 41.3
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 1.7e-45 187.2 281 41.3
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 1.7e-45 187.2 291 39.2
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 2.3e-45 186.8 295 43.4
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 3.9e-45 186.0 285 41.8
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 3.9e-45 186.0 291 38.8
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 6.6e-45 185.3 285 40.4
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 8.6e-45 184.9 288 39.6
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.1e-44 184.5 283 40.3
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.1e-44 184.5 283 40.3
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.1e-44 184.5 283 40.3
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.1e-44 184.5 283 40.3
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 1.1e-44 184.5 283 40.6
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 1.1e-44 184.5 293 38.9
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 1.1e-44 184.5 293 39.6
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 1.5e-44 184.1 289 41.5
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 1.5e-44 184.1 290 39.7
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 1.9e-44 183.7 282 40.4
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 1.9e-44 183.7 295 39.0
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 3.3e-44 183.0 293 41.0
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 4.3e-44 182.6 410 33.4
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 5.6e-44 182.2 290 42.8
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 5.6e-44 182.2 291 40.9
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 7.3e-44 181.8 291 40.2
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 9.6e-44 181.4 303 37.3
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 1.2e-43 181.0 277 40.4
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 2.1e-43 180.3 288 37.8
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 2.1e-43 180.3 291 40.2
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 6.2e-43 178.7 283 39.9
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 6.2e-43 178.7 290 39.7
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 6.2e-43 178.7 300 38.7
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 6.2e-43 178.7 282 39.4
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 6.2e-43 178.7 291 40.2
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 8.1e-43 178.3 291 40.2
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 1.1e-42 177.9 283 39.6
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 3.1e-42 176.4 291 40.2
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 4.0e-42 176.0 289 38.8
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 6.8e-42 175.3 284 41.2
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 8.9e-42 174.9 291 38.1
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 1.2e-41 174.5 289 41.9
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 2.0e-41 173.7 273 38.5
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 2.0e-41 173.7 285 40.7
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 3.4e-41 172.9 283 41.3
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 4.4e-41 172.6 291 39.2
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 5.8e-41 172.2 303 38.0
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 9.9e-41 171.4 292 38.4
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.3e-40 171.0 303 37.6
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 1.7e-40 170.6 381 33.3
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 2.2e-40 170.2 293 38.2
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 8.4e-40 168.3 302 38.1
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 8.4e-40 168.3 319 37.3
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 8.4e-40 168.3 292 38.4
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 3.2e-39 166.4 290 39.7
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 4.2e-39 166.0 290 36.6
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 5.4e-39 165.6 283 37.5
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.6e-38 164.1 302 36.8
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.5e-38 162.9 290 37.9
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 6.0e-38 162.2 268 36.2
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 7.8e-38 161.8 290 37.6
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 7.8e-38 161.8 290 37.6
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 3.0e-37 159.8 292 36.6
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 3.0e-37 159.8 276 38.4
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 3.9e-37 159.5 303 36.6
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 5.1e-37 159.1 278 39.2
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 2.5e-36 156.8 301 35.5
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 4.3e-36 156.0 277 36.8
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 4.0e-34 149.4 279 35.8
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 3.4e-33 146.4 287 35.9
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 5.8e-33 145.6 286 35.0
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 4.9e-32 142.5 286 34.3
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 8.4e-32 141.7 253 39.5
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 1.2e-30 137.9 298 34.9
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 2.7e-30 136.7 370 29.2
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 7.9e-30 135.2 224 37.1
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 1.7e-29 134.0 247 36.4
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 6.6e-29 132.1 210 38.1
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 2.5e-28 130.2 206 38.8
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 5.6e-28 129.0 188 43.1
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 2.6e-25 120.2 165 44.2
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 3.4e-25 119.8 197 39.6
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 2.9e-24 116.7 228 38.6
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 1.1e-23 114.8 222 36.5
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 4.2e-23 112.8 238 34.5
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 4.2e-23 112.8 289 30.4
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 7.1e-23 112.1 201 40.3
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 9.3e-23 111.7 225 36.9
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 4.8e-19 99.4 165 38.2
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 8.1e-19 98.6 104 46.2
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 9.0e-18 95.1 173 39.9
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.2e-17 94.7 171 40.4
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 7.1e-15 85.5 102 42.2
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.6e-14 84.3 102 41.2
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 1.0e-13 81.6 102 40.2
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 5.1e-13 79.3 100 45.0
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 7.4e-12 75.5 169 34.3
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 9.6e-12 75.1 169 33.7
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 1.6e-11 74.3 62 53.2
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.8e-11 73.6 176 33.5
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.7e-11 73.2 169 33.7
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 6.3e-11 72.4 169 33.7
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.4e-10 70.5 169 33.1
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.0e-09 67.4 153 34.0
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.4e-09 66.6 153 34.0
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 5.9e-09 65.9 91 46.2
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.4e-07 61.2 119 37.8
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.6e-06 56.2 91 39.6


User provided reference genes

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