Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 3.1e-240 835.1 544 100.0
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 4.2e-40 170.2 326 41.7
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 2.0e-37 161.4 325 39.4
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 9.8e-37 159.1 241 42.3
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 1.7e-36 158.3 277 39.0
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 2.9e-36 157.5 328 37.2
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 1.1e-35 155.6 342 36.3
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 1.8e-35 154.8 333 36.6
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 3.2e-35 154.1 333 38.1
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 3.2e-35 154.1 227 41.4
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 3.2e-35 154.1 333 36.6
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 3.2e-35 154.1 342 35.4
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 4.1e-35 153.7 339 36.9
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 4.1e-35 153.7 339 36.9
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 4.1e-35 153.7 339 36.9
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 5.4e-35 153.3 318 37.1
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 7.0e-35 152.9 346 37.3
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 9.2e-35 152.5 322 38.8
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 9.2e-35 152.5 322 39.1
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 1.2e-34 152.1 321 38.0
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 1.2e-34 152.1 322 38.5
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 1.2e-34 152.1 334 37.1
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 1.6e-34 151.8 333 37.8
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 2.0e-34 151.4 322 38.8
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 2.0e-34 151.4 322 38.8
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.0e-34 151.4 339 36.6
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 2.0e-34 151.4 347 35.7
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 2.7e-34 151.0 284 36.3
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 3.5e-34 150.6 325 40.0
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.5e-34 150.6 339 36.6
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.5e-34 150.6 339 36.6
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 3.5e-34 150.6 329 35.9
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 3.5e-34 150.6 337 37.4
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 4.6e-34 150.2 335 37.3
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 4.6e-34 150.2 339 36.0
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 4.6e-34 150.2 337 37.4
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 1.3e-33 148.7 335 36.7
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 1.3e-33 148.7 337 37.1
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 1.7e-33 148.3 322 37.9
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 1.7e-33 148.3 346 37.0
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 2.3e-33 147.9 334 36.2
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 2.9e-33 147.5 339 36.0
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 2.9e-33 147.5 330 36.1
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 5.0e-33 146.7 338 35.5
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 5.0e-33 146.7 227 41.0
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 5.0e-33 146.7 185 44.9
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 5.0e-33 146.7 345 35.9
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 6.6e-33 146.4 220 40.0
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 6.6e-33 146.4 329 35.9
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 1.1e-32 145.6 333 35.7
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 1.5e-32 145.2 318 36.8
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 1.9e-32 144.8 336 37.5
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 1.9e-32 144.8 227 41.4
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 1.9e-32 144.8 327 37.0
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 2.5e-32 144.4 318 36.2
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 4.3e-32 143.7 318 35.8
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 7.3e-32 142.9 191 44.5
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 7.3e-32 142.9 318 35.8
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 9.5e-32 142.5 332 35.2
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 1.2e-31 142.1 349 35.5
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 1.2e-31 142.1 346 35.0
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 1.6e-31 141.7 324 36.1
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 1.6e-31 141.7 324 36.1
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 1.6e-31 141.7 325 37.5
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 2.1e-31 141.4 276 38.0
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 2.1e-31 141.4 320 36.9
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 2.1e-31 141.4 331 35.3
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 3.6e-31 140.6 318 36.8
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 4.7e-31 140.2 330 35.5
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 4.7e-31 140.2 330 34.2
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 6.2e-31 139.8 318 38.7
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 6.2e-31 139.8 339 35.7
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 6.2e-31 139.8 325 35.4
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 8.0e-31 139.4 329 35.0
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 8.0e-31 139.4 326 34.0
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 1.0e-30 139.0 325 36.0
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 1.4e-30 138.7 325 35.1
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 1.4e-30 138.7 320 35.3
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 1.4e-30 138.7 323 34.1
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 1.8e-30 138.3 331 35.6
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 1.8e-30 138.3 342 34.8
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 1.8e-30 138.3 299 36.8
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 1.8e-30 138.3 326 35.3
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 3.1e-30 137.5 321 35.2
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 3.1e-30 137.5 327 34.6
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 4.0e-30 137.1 322 35.4
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 5.2e-30 136.7 358 32.1
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 5.2e-30 136.7 347 34.9
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 6.8e-30 136.3 331 36.0
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 6.8e-30 136.3 331 36.0
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 6.8e-30 136.3 346 35.3
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 6.8e-30 136.3 315 35.9
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 8.9e-30 136.0 322 36.6
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 8.9e-30 136.0 332 35.8
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 8.9e-30 136.0 342 34.8
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 8.9e-30 136.0 324 36.4
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 1.2e-29 135.6 344 34.0
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 1.5e-29 135.2 325 36.6
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 2.0e-29 134.8 318 35.2
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 2.6e-29 134.4 357 33.1
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 2.6e-29 134.4 324 34.3
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 2.6e-29 134.4 346 34.7
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 2.6e-29 134.4 299 35.1
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 5.8e-29 133.3 333 32.7
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 7.5e-29 132.9 337 36.2
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 1.3e-28 132.1 338 32.8
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 1.7e-28 131.7 334 35.3
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 2.2e-28 131.3 356 32.3
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 6.4e-28 129.8 374 33.2
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 6.4e-28 129.8 342 31.9
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 2.4e-27 127.9 329 34.3
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 2.0e-26 124.8 279 34.4
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 1.0e-25 122.5 310 35.5
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 3.9e-25 120.6 277 35.0
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 6.2e-23 113.2 307 31.9
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 2.0e-21 108.2 327 31.2
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 5.4e-19 100.1 143 42.0
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 3.0e-17 94.4 298 33.2
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.1e-15 88.2 134 41.0
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 6.2e-15 86.7 274 32.8
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.5e-13 82.0 100 45.0
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 2.6e-13 81.3 190 32.1
PGSC0003DMG400021562 Solanum tuberosum HOM05D000142 ORTHO05D001253 3.4e-13 80.9 207 29.5
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 4.4e-13 80.5 123 43.1
Solyc09g007850.3 Solanum lycopersicum HOM05D000142 ORTHO05D001253 4.4e-13 80.5 205 28.8
Hma1.2p1_0614F.1_g189420 Hydrangea macrophylla HOM05D000142 ORTHO05D001253 5.8e-13 80.1 218 29.8
Ca_19429_v3 Cicer arietinum L. HOM05D000142 ORTHO05D001253 8.4e-12 76.3 223 29.6
FvH4_6g16030 Fragaria vesca HOM05D000142 ORTHO05D001253 9.2e-11 72.8 223 29.1
FAN02G2623 Fragaria x ananassa HOM05D000524 ORTHO05D000381 9.2e-11 72.8 223 29.1
FAN14G5512 Fragaria x ananassa HOM05D000142 ORTHO05D001253 9.2e-11 72.8 223 29.1
Dinv35762 Davidia involucrata HOM05D000142 ORTHO05D001253 1.2e-10 72.4 205 28.3
EL10Ac7g16603 Beta vulgaris HOM05D000142 ORTHO05D001253 2.1e-10 71.6 211 28.0
FAN09G0494 Fragaria x ananassa HOM05D000142 ORTHO05D001253 2.7e-10 71.2 223 30.0
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 7.8e-10 69.7 192 33.9
AUR62040470 Chenopodium quinoa HOM05D000142 ORTHO05D001253 1.0e-09 69.3 205 27.8
DCAR_014987 Daucus carota HOM05D000142 ORTHO05D001253 1.0e-09 69.3 205 28.8
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 1.3e-09 68.9 336 28.3
ECA238G1210 Erigeron canadensis HOM05D000142 ORTHO05D001253 1.3e-09 68.9 230 28.7
ECA233G3351 Erigeron canadensis HOM05D000122 ORTHO05D000139 2.3e-09 68.2 221 26.2
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 3.0e-09 67.8 117 43.6
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 3.0e-09 67.8 196 29.1
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 3.0e-09 67.8 117 43.6
HanXRQChr07g0195311 Helianthus annuus HOM05D000142 ORTHO05D001253 3.0e-09 67.8 231 27.3
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 5.1e-09 67.0 196 29.1
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 5.1e-09 67.0 196 29.1
ATR0048G013 Amborella trichopoda HOM05D000142 ORTHO05D001253 6.6e-09 66.6 226 26.5
Lalb_Chr06g0171541 Lupinus albus HOM05D000142 ORTHO05D001253 6.6e-09 66.6 214 27.1
Potri.012G090200 Populus trichocarpa HOM05D000142 ORTHO05D001253 1.5e-08 65.5 225 28.4
Atru.chr8.1858 Acer truncatum HOM05D000142 ORTHO05D001253 1.9e-08 65.1 207 26.6
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 1.9e-08 65.1 65 49.2
BcaB02g09298 Brassica carinata HOM05D000142 ORTHO05D001253 2.5e-08 64.7 208 27.9
Carub.0004s1912 Capsella rubella HOM05D000142 ORTHO05D001253 2.5e-08 64.7 231 27.3
Lsat_1_v5_gn_2_106441 Lactuca sativa HOM05D000122 ORTHO05D000139 2.5e-08 64.7 227 26.9
GSVIVG01032361001 Vitis vinifera HOM05D000142 ORTHO05D001253 2.5e-08 64.7 230 28.3
AagrBONN_evm.TU.Sc2ySwM_344.417 Anthoceros agrestis HOM05D000428 ORTHO05D003173 3.3e-08 64.3 215 27.0
Os03g0376600 Oryza sativa ssp. japonica HOM05D000142 ORTHO05D001253 3.3e-08 64.3 205 27.8
BcaC02g11843 Brassica carinata HOM05D000142 ORTHO05D001253 4.3e-08 63.9 212 26.9
C04p10770 Brassica napus HOM05D000142 ORTHO05D001253 4.3e-08 63.9 212 26.9
PSO339G2666 Papaver somniferum HOM05D000142 ORTHO05D001253 5.6e-08 63.5 205 25.4
Eucgr.K01243 Eucalyptus grandis HOM05D000142 ORTHO05D001253 7.3e-08 63.2 223 26.5
Solyc10g086150.2 Solanum lycopersicum HOM05D000142 ORTHO05D001253 1.2e-07 62.4 237 26.2
Sopen10g035530 Solanum pennellii HOM05D000142 ORTHO05D001253 1.2e-07 62.4 237 26.2
Mapoly0183s0014 Marchantia polymorpha HOM05D000142 ORTHO05D001253 1.6e-07 62.0 231 28.1
AUR62039878 Chenopodium quinoa HOM05D000142 ORTHO05D001253 2.8e-07 61.2 199 26.1
Peaxi162Scf00123g00068 Petunia axillaris HOM05D000142 ORTHO05D001253 2.8e-07 61.2 222 26.6
AagrBONN_evm.TU.Sc2ySwM_369.318 Anthoceros agrestis HOM05D004650 ORTHO05D005715 3.6e-07 60.8 298 28.2
PGR142G4243 Punica granatum HOM05D000142 ORTHO05D001253 3.6e-07 60.8 205 26.8
TPR.G24770 Trifolium pratense HOM05D000142 ORTHO05D001253 4.7e-07 60.5 223 25.1
Nitab4.5_0000754g0250 Nicotiana tabacum HOM05D000142 ORTHO05D001253 6.2e-07 60.1 222 25.2
PSO063G1344 Papaver somniferum HOM05D000142 ORTHO05D001253 8.1e-07 59.7 206 25.2
PGSC0003DMG400017584 Solanum tuberosum HOM05D000142 ORTHO05D001253 8.1e-07 59.7 242 25.2
Nitab4.5_0002130g0040 Nicotiana tabacum HOM05D000142 ORTHO05D001253 1.1e-06 59.3 222 25.2
TPR.G31290 Trifolium pratense HOM05D000142 ORTHO05D007638 1.1e-06 59.3 206 25.2
PSO384G2168 Papaver somniferum HOM05D000142 ORTHO05D008397 1.4e-06 58.9 220 27.3
PSO339G3016 Papaver somniferum HOM05D000142 ORTHO05D008397 1.8e-06 58.5 220 27.3
TPR.G25330 Trifolium pratense HOM05D000142 ORTHO05D007638 1.8e-06 58.5 205 27.3
Lalb_Chr02g0156091 Lupinus albus HOM05D000142 ORTHO05D001253 4.0e-06 57.4 226 24.8
Nn6g34639 Nelumbo nucifera HOM05D000142 ORTHO05D007638 4.0e-06 57.4 102 31.4
Dinv37292 Davidia involucrata HOM05D000142 ORTHO05D001253 6.8e-06 56.6 234 25.6


User provided reference genes

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