Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G216 Micromonas commoda HOM05D003504 ORTHO05D004006 1.8e-183 646.0 362 100.0
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 7.5e-09 65.9 278 25.5
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 9.8e-09 65.5 278 25.5
MD05G1233200 Malus domestica HOM05D003504 ORTHO05D004006 9.8e-09 65.5 278 25.5
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 9.8e-09 65.5 278 25.5
Peaxi162Scf01205g00167 Petunia axillaris HOM05D003504 ORTHO05D004006 9.8e-09 65.5 278 25.5
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 9.8e-09 65.5 278 25.5
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 9.8e-09 65.5 278 25.5
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 1.3e-08 65.1 278 25.2
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 1.3e-08 65.1 278 24.8
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 1.7e-08 64.7 278 25.2
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 1.7e-08 64.7 273 25.6
Cpa.g.sc34.42 Carica papaya HOM05D003504 ORTHO05D004006 1.7e-08 64.7 273 25.6
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 1.7e-08 64.7 273 25.6
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 1.7e-08 64.7 279 25.4
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 2.2e-08 64.3 273 25.3
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 2.2e-08 64.3 273 25.3
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 2.2e-08 64.3 278 25.2
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 2.2e-08 64.3 278 25.2
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 2.2e-08 64.3 278 25.2
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 2.2e-08 64.3 278 25.2
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 2.2e-08 64.3 278 25.2
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 2.2e-08 64.3 273 25.6
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 2.2e-08 64.3 273 24.9
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 2.2e-08 64.3 278 25.2
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 2.9e-08 63.9 278 25.2
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 2.9e-08 63.9 273 25.6
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 2.9e-08 63.9 273 25.6
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 2.9e-08 63.9 273 25.3
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 2.9e-08 63.9 278 25.2
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 2.9e-08 63.9 274 25.5
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 2.9e-08 63.9 273 25.6
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 2.9e-08 63.9 273 25.3
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 2.9e-08 63.9 278 25.2
vmacro15992 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 2.9e-08 63.9 278 25.2
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 3.7e-08 63.5 273 25.3
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 4.9e-08 63.2 278 25.2
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 4.9e-08 63.2 278 25.2
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 4.9e-08 63.2 273 24.9
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 4.9e-08 63.2 278 25.2
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 6.4e-08 62.8 276 25.0
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 6.4e-08 62.8 278 25.2
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 6.4e-08 62.8 276 25.0
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 6.4e-08 62.8 278 25.2
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 6.4e-08 62.8 273 24.5
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 6.4e-08 62.8 278 24.5
Os03g0328000 Oryza sativa ssp. japonica HOM05D003504 ORTHO05D004006 6.4e-08 62.8 278 25.2
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 6.4e-08 62.8 278 25.2
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 6.4e-08 62.8 278 25.2
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 6.4e-08 62.8 276 25.0
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 6.4e-08 62.8 278 24.5
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 6.4e-08 62.8 278 24.8
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 8.3e-08 62.4 276 25.0
AL727U10010 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 8.3e-08 62.4 232 25.4
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 8.3e-08 62.4 273 25.3
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 8.3e-08 62.4 212 27.4
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 8.3e-08 62.4 273 25.3
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 8.3e-08 62.4 273 25.3
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 8.3e-08 62.4 273 25.3
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 8.3e-08 62.4 273 25.3
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 8.3e-08 62.4 278 25.2
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 1.1e-07 62.0 273 25.3
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 1.1e-07 62.0 273 25.3
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 1.1e-07 62.0 273 25.3
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 1.1e-07 62.0 273 25.3
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 1.1e-07 62.0 273 25.3
Gohir.A12G174150 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.1e-07 62.0 273 25.3
Gohir.D12G176866 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.1e-07 62.0 273 25.3
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 1.1e-07 62.0 273 25.3
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 1.1e-07 62.0 273 24.9
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 1.1e-07 62.0 273 25.3
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 1.1e-07 62.0 278 24.5
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 1.4e-07 61.6 278 24.8
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 1.4e-07 61.6 276 24.6
CSS0025770 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 1.4e-07 61.6 278 24.8
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 1.4e-07 61.6 278 24.8
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 1.4e-07 61.6 278 24.8
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 1.4e-07 61.6 278 25.2
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 1.9e-07 61.2 276 24.6
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 1.9e-07 61.2 270 24.8
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 1.9e-07 61.2 278 25.2
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 1.9e-07 61.2 273 24.9
Nn1g07198 Nelumbo nucifera HOM05D003504 ORTHO05D004006 1.9e-07 61.2 278 24.5
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 1.9e-07 61.2 278 24.5
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 2.4e-07 60.8 273 24.9
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 2.4e-07 60.8 278 24.8
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 2.4e-07 60.8 278 24.1
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 3.2e-07 60.5 278 24.1
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 3.2e-07 60.5 273 24.2
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 3.2e-07 60.5 273 23.4
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 4.1e-07 60.1 270 24.4
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 4.1e-07 60.1 278 24.8
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 5.4e-07 59.7 270 24.8
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 5.4e-07 59.7 293 24.9
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 5.4e-07 59.7 224 25.4
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 5.4e-07 59.7 278 24.8
Ca_24183_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 7.0e-07 59.3 273 24.9
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 9.2e-07 58.9 273 24.9
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 9.2e-07 58.9 273 24.9
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 9.2e-07 58.9 273 24.9
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 1.2e-06 58.5 284 23.6
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 1.2e-06 58.5 278 24.5
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 1.6e-06 58.2 273 24.5
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 2.0e-06 57.8 275 24.0
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 3.5e-06 57.0 293 24.6
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 4.6e-06 56.6 273 23.1
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 6.0e-06 56.2 270 22.6
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 7.8e-06 55.8 278 24.1


User provided reference genes

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