Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 0.0e+00 2983.0 1506 100.0
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 7.8e-84 317.0 1187 27.5
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 5.4e-69 267.7 1225 25.9
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 6.4e-62 244.2 1223 24.9
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 7.8e-60 237.3 1345 25.6
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 1.3e-57 229.9 1206 24.3
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 5.8e-55 221.1 1041 26.4
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 1.3e-54 219.9 993 24.6
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 2.2e-54 219.2 995 25.0
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 3.5e-52 211.8 1209 24.0
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 4.6e-52 211.5 982 24.7
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 5.1e-51 208.0 1146 22.7
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 3.3e-50 205.3 976 24.2
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 7.4e-50 204.1 988 23.2
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 9.6e-50 203.8 984 24.4
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 4.8e-49 201.4 850 24.0
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 4.8e-49 201.4 998 24.4
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 4.8e-49 201.4 978 23.9
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 8.1e-49 200.7 983 23.6
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 1.1e-48 200.3 977 23.2
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 1.8e-48 199.5 983 23.4
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 2.4e-48 199.1 982 23.4
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 3.1e-48 198.7 997 24.2
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 3.1e-48 198.7 841 24.7
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 5.3e-48 198.0 991 23.9
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 6.9e-48 197.6 985 23.5
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 6.9e-48 197.6 984 23.7
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 6.9e-48 197.6 1176 22.6
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 9.0e-48 197.2 982 23.7
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 1.2e-47 196.8 986 23.0
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 1.2e-47 196.8 990 23.2
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 1.5e-47 196.4 988 23.5
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 1.5e-47 196.4 984 22.9
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 4.5e-47 194.9 1029 24.3
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 4.5e-47 194.9 983 23.3
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 4.5e-47 194.9 982 23.4
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 9.9e-47 193.7 982 23.5
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 1.3e-46 193.4 1167 22.8
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 1.3e-46 193.4 857 23.9
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 2.9e-46 192.2 1001 22.9
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 3.8e-46 191.8 987 23.8
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 4.9e-46 191.4 982 23.4
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 6.4e-46 191.0 981 23.6
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 8.4e-46 190.7 982 23.3
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 8.4e-46 190.7 981 22.1
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 8.4e-46 190.7 993 24.0
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 8.4e-46 190.7 991 23.5
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 1.1e-45 190.3 960 23.3
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 1.1e-45 190.3 985 23.8
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 1.9e-45 189.5 975 23.4
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 1.9e-45 189.5 982 23.6
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 3.2e-45 188.7 1001 23.1
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 3.2e-45 188.7 990 23.9
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 3.2e-45 188.7 975 23.3
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 5.5e-45 188.0 982 22.7
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 5.5e-45 188.0 980 22.6
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 7.1e-45 187.6 981 23.8
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 7.1e-45 187.6 981 22.7
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 1.6e-44 186.4 840 24.0
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 2.1e-44 186.0 977 22.5
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 2.7e-44 185.7 987 23.0
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 2.7e-44 185.7 869 23.7
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 4.6e-44 184.9 982 23.4
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 6.0e-44 184.5 981 22.8
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 6.0e-44 184.5 982 23.2
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 6.0e-44 184.5 837 23.4
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 7.9e-44 184.1 987 23.4
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 7.9e-44 184.1 983 23.1
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.0e-43 183.7 965 22.4
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 1.0e-43 183.7 982 22.4
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 1.3e-43 183.3 984 23.4
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 1.8e-43 183.0 982 23.3
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 1.8e-43 183.0 985 22.5
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 1.8e-43 183.0 981 22.0
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 2.3e-43 182.6 985 23.0
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 3.0e-43 182.2 1529 22.0
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 5.1e-43 181.4 985 23.6
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 6.7e-43 181.0 881 24.1
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 8.7e-43 180.6 982 22.5
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 8.7e-43 180.6 978 22.2
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 1.5e-42 179.9 970 23.4
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 2.5e-42 179.1 861 23.7
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 5.6e-42 177.9 982 22.1
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 7.4e-42 177.6 982 22.7
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 7.4e-42 177.6 982 22.2
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 7.4e-42 177.6 982 22.2
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 1.3e-41 176.8 983 21.8
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 2.1e-41 176.0 1065 22.7
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 2.8e-41 175.6 987 23.3
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 3.7e-41 175.3 991 21.6
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 8.1e-41 174.1 988 23.0
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 4.0e-40 171.8 1046 22.3
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 5.3e-40 171.4 983 22.8
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 1.2e-39 170.2 984 22.3
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 2.6e-39 169.1 781 24.1
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 2.6e-39 169.1 687 24.6
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 2.2e-38 166.0 797 24.1
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 3.8e-38 165.2 845 24.3
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 5.5e-37 161.4 840 22.6
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 7.9e-36 157.5 703 23.9
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 1.6e-33 149.8 781 23.6
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 3.1e-32 145.6 581 26.7
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 1.3e-30 140.2 579 25.9
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 7.9e-28 131.0 687 23.3
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 8.7e-27 127.5 496 25.2
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 1.1e-24 120.6 580 24.5
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 1.2e-23 117.1 495 24.6
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 2.0e-23 116.3 493 22.7
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 1.3e-22 113.6 389 26.0
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 1.7e-22 113.2 498 24.3
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 6.5e-22 111.3 487 24.2
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 1.0e-19 104.0 421 24.7
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 5.7e-18 98.2 348 25.6
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 7.7e-15 87.8 271 26.6
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 1.3e-14 87.0 505 24.0
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 5.0e-14 85.1 571 21.5
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 8.5e-14 84.3 354 22.9
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 3.9e-11 75.5 196 32.1
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 7.0e-08 64.7 291 28.2
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 5.0e-06 58.5 119 31.1


User provided reference genes

Program Settings