Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G147 Micromonas commoda HOM05D002496 ORTHO05D002787 0.0e+00 1190.6 569 100.0
MCO11G888 Micromonas commoda HOM05D002496 ORTHO05D002787 3.7e-143 512.7 478 53.3
Cre02.g112250 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 5.8e-32 143.3 312 30.1
Cre02.g112300 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 2.4e-30 137.9 352 30.7
Cre17.g728300 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 2.5e-27 127.9 344 30.8
MCO05G112 Micromonas commoda HOM05D002496 ORTHO05D002787 4.3e-27 127.1 337 29.7
Cre05.g241202 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 1.6e-26 125.2 337 31.2
CBR_g37133 Chara braunii HOM05D002496 ORTHO05D002787 1.5e-24 118.6 311 30.2
CBR_g23680 Chara braunii HOM05D002496 ORTHO05D002787 2.0e-24 118.2 309 27.8
Cc01_g00070 Coffea canephora HOM05D002496 ORTHO05D002787 3.2e-22 110.9 309 28.8
Migut.D02566 Erythranthe guttata HOM05D002496 ORTHO05D002787 5.5e-22 110.2 309 29.1
Migut.D02589 Erythranthe guttata HOM05D002496 ORTHO05D002787 5.5e-22 110.2 309 29.1
MD11G1003500 Malus domestica HOM05D002496 ORTHO05D002787 5.5e-22 110.2 310 28.4
SalBow2G0058 Salvia bowleyana HOM05D002496 ORTHO05D002787 5.5e-22 110.2 309 29.1
Thecc.09G199700 Theobroma cacao HOM05D002496 ORTHO05D002787 5.5e-22 110.2 323 27.9
Mapoly0026s0110 Marchantia polymorpha HOM05D002496 ORTHO05D002787 7.1e-22 109.8 307 28.3
HanXRQChr13g0405751 Helianthus annuus HOM05D002496 ORTHO05D002787 1.2e-21 109.0 311 28.0
SGA_v2.0_scaffold3G01729 Striga asiatica HOM05D002496 ORTHO05D002787 1.6e-21 108.6 309 28.2
unitig_899.g15353 Utricularia gibba HOM05D002496 ORTHO05D002787 1.6e-21 108.6 309 29.1
MD03G1003600 Malus domestica HOM05D002496 ORTHO05D002787 2.1e-21 108.2 310 28.1
Nitab4.5_0000827g0130 Nicotiana tabacum HOM05D002496 ORTHO05D002787 2.7e-21 107.8 306 28.4
Os02g0709400 Oryza sativa ssp. japonica HOM05D002496 ORTHO05D002787 2.7e-21 107.8 463 24.4
Rhsim01G0184300 Rhododendron simsii HOM05D002496 ORTHO05D002787 2.7e-21 107.8 311 27.7
Dinv13473 Davidia involucrata HOM05D002496 ORTHO05D002787 3.5e-21 107.5 310 28.1
MSTRG.20937 Avicennia marina HOM05D002496 ORTHO05D002787 4.6e-21 107.1 306 28.8
Ciclev10014012m.g Citrus clementina HOM05D002496 ORTHO05D002787 4.6e-21 107.1 310 28.1
Gohir.A03G022300 Gossypium hirsutum HOM05D002496 ORTHO05D002787 4.6e-21 107.1 311 27.0
HanXRQChr02g0057261 Helianthus annuus HOM05D002496 ORTHO05D002787 4.6e-21 107.1 311 28.3
Lsat_1_v5_gn_6_53141 Lactuca sativa HOM05D002496 ORTHO05D002787 4.6e-21 107.1 311 27.7
arahy.Tifrunner.gnm1.ann1.3G7H7K Arachis hypogaea HOM05D002496 ORTHO05D002787 6.0e-21 106.7 309 28.2
Cpa.g.sc119.40 Carica papaya HOM05D002496 ORTHO05D002787 6.0e-21 106.7 309 27.8
Duzib168G0200 Durio zibethinus HOM05D002496 ORTHO05D002787 6.0e-21 106.7 323 28.2
FvH4_3g45741 Fragaria vesca HOM05D002496 ORTHO05D002787 6.0e-21 106.7 310 27.7
FAN16G0954 Fragaria x ananassa HOM05D002496 ORTHO05D002787 6.0e-21 106.7 310 27.7
FAN25G0679 Fragaria x ananassa HOM05D002496 ORTHO05D002787 6.0e-21 106.7 310 27.7
Glyma.05G167200 Glycine max HOM05D002496 ORTHO05D002787 6.0e-21 106.7 309 28.2
Gohir.D03G146400 Gossypium hirsutum HOM05D002496 ORTHO05D002787 6.0e-21 106.7 313 27.8
Phvul.002G247600 Phaseolus vulgaris HOM05D002496 ORTHO05D002787 6.0e-21 106.7 309 28.5
RcHm_v2.0_Chr5g0083811 Rosa chinensis HOM05D002496 ORTHO05D002787 6.0e-21 106.7 310 27.7
Sed0022657 Sechium edule HOM05D002496 ORTHO05D002787 6.0e-21 106.7 310 27.1
Glyma.08G125500 Glycine max HOM05D002496 ORTHO05D002787 7.9e-21 106.3 309 28.2
Nn7g35861 Nelumbo nucifera HOM05D002496 ORTHO05D002787 7.9e-21 106.3 309 27.5
Potri.001G003900 Populus trichocarpa HOM05D002496 ORTHO05D002787 7.9e-21 106.3 309 28.2
Sed0000966 Sechium edule HOM05D002496 ORTHO05D002787 7.9e-21 106.3 309 27.8
THA.LOC104810325 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 7.9e-21 106.3 312 27.6
Prupe.6G003300 Prunus persica HOM05D002496 ORTHO05D002787 1.0e-20 105.9 309 27.8
VMungo0251G1507 Vigna mungo HOM05D002496 ORTHO05D002787 1.0e-20 105.9 309 28.5
GSVIVG01025470001 Vitis vinifera HOM05D002496 ORTHO05D002787 1.0e-20 105.9 309 28.2
Zm00001eb014030 Zea mays HOM05D002496 ORTHO05D002787 1.0e-20 105.9 311 27.0
Actinidia39346 Actinidia chinensis HOM05D002496 ORTHO05D002787 1.3e-20 105.5 311 26.0
Aa31LG10G1150 Aethionema arabicum HOM05D002496 ORTHO05D002787 1.3e-20 105.5 317 27.1
arahy.Tifrunner.gnm1.ann1.P751E4 Arachis hypogaea HOM05D002496 ORTHO05D002787 1.3e-20 105.5 309 27.8
BcaB04g16962 Brassica carinata HOM05D002496 ORTHO05D002787 1.3e-20 105.5 317 27.4
CiPaw.13G177100 Carya illinoinensis HOM05D002496 ORTHO05D002787 1.3e-20 105.5 309 28.5
ClCG03G014540 Citrullus lanatus HOM05D002496 ORTHO05D002787 1.3e-20 105.5 310 26.5
Gorai.003G153800 Gossypium raimondii HOM05D002496 ORTHO05D002787 1.3e-20 105.5 309 28.2
Hma1.2p1_0241F.1_g100580 Hydrangea macrophylla HOM05D002496 ORTHO05D002787 1.3e-20 105.5 311 27.7
MBI01_g25638_MAGBIO Magnolia biondii HOM05D002496 ORTHO05D002787 1.3e-20 105.5 311 27.3
Potri.003G221100 Populus trichocarpa HOM05D002496 ORTHO05D002787 1.3e-20 105.5 309 27.8
vmacro12599 Vaccinium macrocarpon HOM05D002496 ORTHO05D002787 1.3e-20 105.5 311 27.3
CANSAT11G2110 Cannabis sativa HOM05D002496 ORTHO05D002787 1.8e-20 105.1 309 27.5
AUR62019163 Chenopodium quinoa HOM05D002496 ORTHO05D002787 1.8e-20 105.1 312 28.2
AUR62040903 Chenopodium quinoa HOM05D002496 ORTHO05D002787 1.8e-20 105.1 312 28.2
Lj4g0028195 Lotus japonicus HOM05D002496 ORTHO05D002787 1.8e-20 105.1 309 27.8
Peaxi162Scf00738g00312 Petunia axillaris HOM05D002496 ORTHO05D002787 1.8e-20 105.1 306 28.1
PGSC0003DMG400004280 Solanum tuberosum HOM05D002496 ORTHO05D002787 1.8e-20 105.1 306 28.1
TAR623G0218 Trochodendron aralioides HOM05D002496 ORTHO05D002787 1.8e-20 105.1 309 27.8
AL1G63400 Arabidopsis lyrata HOM05D002496 ORTHO05D002787 2.3e-20 104.8 319 27.0
MELO3C015577.2 Cucumis melo HOM05D002496 ORTHO05D002787 2.3e-20 104.8 309 27.5
CsaV3_1G041650 Cucumis sativus L. HOM05D002496 ORTHO05D002787 2.3e-20 104.8 309 27.5
Manes.03G087600 Manihot esculenta HOM05D002496 ORTHO05D002787 2.3e-20 104.8 311 27.3
PGR119G1355 Punica granatum HOM05D002496 ORTHO05D002787 2.3e-20 104.8 310 28.7
QL01p003675 Quercus lobata HOM05D002496 ORTHO05D002787 2.3e-20 104.8 309 28.5
Sabra01G0002600 Salix brachista HOM05D002496 ORTHO05D002787 2.3e-20 104.8 311 28.0
THA.LOC104822681 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 2.3e-20 104.8 309 28.5
Cfa009562 Carpinus fangiana HOM05D002496 ORTHO05D002787 3.0e-20 104.4 309 28.2
Haze_22941 Corylus avellana HOM05D002496 ORTHO05D002787 3.0e-20 104.4 309 28.2
Lj2A763G36 Lonicera japonica HOM05D002496 ORTHO05D002787 3.0e-20 104.4 309 27.5
Mapoly0026s0090 Marchantia polymorpha HOM05D002496 ORTHO05D002787 3.0e-20 104.4 306 28.4
Sc16g0012220 Simmondsia chinensis HOM05D002496 ORTHO05D002787 3.0e-20 104.4 311 26.7
HPP92_024699 Vanilla planifolia HOM05D002496 ORTHO05D002787 3.0e-20 104.4 310 28.1
BcaC08g43618 Brassica carinata HOM05D002496 ORTHO05D002787 3.9e-20 104.0 317 27.1
A06p00230 Brassica napus HOM05D002496 ORTHO05D002787 3.9e-20 104.0 317 27.1
C06p10330 Brassica napus HOM05D002496 ORTHO05D002787 3.9e-20 104.0 317 27.1
BolC6t36109H Brassica oleracea HOM05D002496 ORTHO05D002787 3.9e-20 104.0 317 27.1
BraA06t23239Z Brassica rapa HOM05D002496 ORTHO05D002787 3.9e-20 104.0 317 27.1
CSS0046180 Camellia sinensis var. sinensis HOM05D002496 ORTHO05D002787 3.9e-20 104.0 309 27.2
Carub.0001s4386 Capsella rubella HOM05D002496 ORTHO05D002787 3.9e-20 104.0 319 27.0
ECA233G0145 Erigeron canadensis HOM05D002496 ORTHO05D002787 3.9e-20 104.0 311 27.3
Hund21627 Selenicereus undatus HOM05D002496 ORTHO05D002787 3.9e-20 104.0 311 27.0
Solyc12g100360.1 Solanum lycopersicum HOM05D002496 ORTHO05D002787 3.9e-20 104.0 306 27.8
AT1G55350 Arabidopsis thaliana HOM05D002496 ORTHO05D002787 5.1e-20 103.6 319 27.0
CAN.G2376.2 Capsicum annuum HOM05D002496 ORTHO05D002787 5.1e-20 103.6 306 27.8
Thhalv10011175m.g Eutrema salsugineum HOM05D002496 ORTHO05D002787 5.1e-20 103.6 317 26.8
AagrBONN_evm.TU.Sc2ySwM_344.939 Anthoceros agrestis HOM05D002496 ORTHO05D002787 6.7e-20 103.2 306 29.1
EL10Ac4g10386 Beta vulgaris HOM05D002496 ORTHO05D002787 6.7e-20 103.2 314 27.7
Oeu023700.1 Olea europaea HOM05D002496 ORTHO05D002787 6.7e-20 103.2 310 27.1
Oeu023952.2 Olea europaea HOM05D002496 ORTHO05D002787 6.7e-20 103.2 310 27.1
ATR0827G153 Amborella trichopoda HOM05D002496 ORTHO05D002787 8.7e-20 102.8 309 27.2
TAR369G0007 Trochodendron aralioides HOM05D002496 ORTHO05D002787 8.7e-20 102.8 309 26.9
CARHR045010 Cardamine hirsuta HOM05D002496 ORTHO05D002787 1.1e-19 102.4 328 26.2
Ca_17842_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 1.1e-19 102.4 309 27.5
Ca_17843_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 1.1e-19 102.4 309 27.5
Sp1g41030 Schrenkiella parvula HOM05D002496 ORTHO05D002787 1.1e-19 102.4 317 27.4
Psat7g063600 Pisum sativum HOM05D002496 ORTHO05D002787 1.5e-19 102.1 309 26.5
Sopen12g035030 Solanum pennellii HOM05D002496 ORTHO05D002787 1.5e-19 102.1 306 27.8
DCAR_029934 Daucus carota HOM05D002496 ORTHO05D002787 1.9e-19 101.7 311 27.0
PSO339G0705 Papaver somniferum HOM05D002496 ORTHO05D002787 1.9e-19 101.7 306 28.1
PSO384G1583 Papaver somniferum HOM05D002496 ORTHO05D002787 1.9e-19 101.7 306 28.1
Lalb_Chr13g0295581 Lupinus albus HOM05D002496 ORTHO05D002787 2.5e-19 101.3 309 27.2
CAN.G2119.1 Capsicum annuum HOM05D002496 ORTHO05D002787 4.3e-19 100.5 304 27.6
TPR.G6803 Trifolium pratense HOM05D002496 ORTHO05D002787 4.3e-19 100.5 309 26.5
CDE02G1358 Ceratophyllum demersum HOM05D002496 ORTHO05D002787 5.6e-19 100.1 309 27.5
Medtr8g088520 Medicago truncatula HOM05D002496 ORTHO05D002787 5.6e-19 100.1 309 26.5
Eucgr.J01766 Eucalyptus grandis HOM05D002496 ORTHO05D002787 7.4e-19 99.8 309 26.5
Pp3c17_17550 Physcomitrium patens HOM05D002496 ORTHO05D002787 7.4e-19 99.8 309 27.5
SEGI_26512 Sequoiadendron giganteum HOM05D002496 ORTHO05D002787 9.6e-19 99.4 306 27.8
Aqoxy1G00475 Aquilegia oxysepala HOM05D002496 ORTHO05D002787 2.1e-18 98.2 311 26.0
MCO07G349 Micromonas commoda HOM05D002496 ORTHO05D002787 1.8e-17 95.1 356 25.0
SMO332G0020 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 1.8e-17 95.1 313 27.5
SMO334G0130 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 1.8e-17 95.1 313 27.5
Sabra03G0164600 Salix brachista HOM05D002496 ORTHO05D002787 3.4e-16 90.9 352 24.1
COL.COLO4_05794 Corchorus olitorius HOM05D002496 ORTHO05D002787 1.0e-15 89.4 308 25.6
CBR_g39746 Chara braunii HOM05D002496 ORTHO05D002787 1.4e-14 85.5 325 26.2
Atru.chr3.2106 Acer truncatum HOM05D002496 ORTHO05D002787 7.1e-14 83.2 265 27.5
MCO16G075 Micromonas commoda HOM05D002496 ORTHO05D002787 9.3e-14 82.8 137 32.1
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 1.6e-13 82.0 247 26.3
FAN11G3798 Fragaria x ananassa HOM05D002496 ORTHO05D002787 2.1e-13 81.6 251 26.3
FAN11G2291 Fragaria x ananassa HOM05D002496 ORTHO05D002787 6.0e-13 80.1 252 26.2
FvH4_3g45640 Fragaria vesca HOM05D002496 ORTHO05D002787 2.3e-12 78.2 265 26.8
CAN.G1783.6 Capsicum annuum HOM05D002496 ORTHO05D002787 4.3e-11 73.9 261 26.8
CAN.G1669.10 Capsicum annuum HOM05D002496 ORTHO05D002787 2.2e-10 71.6 247 25.1
FvH4_3g45670 Fragaria vesca HOM05D002496 ORTHO05D002787 3.7e-10 70.9 118 33.9
FAN25G1480 Fragaria x ananassa HOM05D002496 ORTHO05D002787 1.1e-09 69.3 118 32.2
CiPaw.14G136900 Carya illinoinensis HOM05D002496 ORTHO05D002787 1.8e-09 68.6 118 33.1
CAN.G1751.13 Capsicum annuum HOM05D002496 ORTHO05D002787 9.0e-09 66.2 118 33.1
CBR_g23253 Chara braunii HOM05D002496 ORTHO05D002787 2.9e-07 61.2 254 24.0
CBR_g38075 Chara braunii HOM05D000019 ORTHO05D002787 5.0e-07 60.5 126 29.4


User provided reference genes

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