Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO08G200 Micromonas commoda HOM05D003259 ORTHO05D003695 1.6e-39 165.6 82 100.0
MCO08G250 Micromonas commoda HOM05D003259 ORTHO05D003695 1.6e-39 165.6 82 100.0
SMO364G0169 Selaginella moellendorffii HOM05D003259 ORTHO05D003695 1.4e-19 99.4 82 59.8
CBR_g31992 Chara braunii HOM05D003259 ORTHO05D003695 3.1e-19 98.2 82 56.1
Gohir.A09G217500 Gossypium hirsutum HOM05D003259 ORTHO05D003695 5.3e-19 97.4 82 57.3
CDE06G2608 Ceratophyllum demersum HOM05D003259 ORTHO05D003695 9.0e-19 96.7 82 56.1
TWI73G0562 Tripterygium wilfordii HOM05D003259 ORTHO05D003695 1.2e-18 96.3 82 56.1
Gohir.D09G219900 Gossypium hirsutum HOM05D003259 ORTHO05D003695 1.5e-18 95.9 82 56.1
Gorai.006G240900 Gossypium raimondii HOM05D003259 ORTHO05D003695 1.5e-18 95.9 82 56.1
THA.LOC104803041 Tarenaya hassleriana HOM05D003259 ORTHO05D003695 1.5e-18 95.9 82 54.9
THA.LOC104808561 Tarenaya hassleriana HOM05D003259 ORTHO05D003695 1.5e-18 95.9 82 54.9
Carub.0007s2733 Capsella rubella HOM05D003259 ORTHO05D003695 2.0e-18 95.5 82 53.7
Pp3c25_9390 Physcomitrium patens HOM05D003259 ORTHO05D003695 2.0e-18 95.5 82 56.1
Potri.010G084800 Populus trichocarpa HOM05D003259 ORTHO05D003695 2.0e-18 95.5 82 54.9
A08p11470 Brassica napus HOM05D003259 ORTHO05D003695 2.6e-18 95.1 82 53.7
BraA08t33141Z Brassica rapa HOM05D003259 ORTHO05D003695 2.6e-18 95.1 82 53.7
CANSAT56G2276 Cannabis sativa HOM05D003259 ORTHO05D003695 2.6e-18 95.1 82 56.1
MD13G1196600 Malus domestica HOM05D003259 ORTHO05D003695 2.6e-18 95.1 82 57.3
MD16G1197000 Malus domestica HOM05D003259 ORTHO05D003695 2.6e-18 95.1 82 57.3
Prupe.1G017400 Prunus persica HOM05D003259 ORTHO05D003695 2.6e-18 95.1 82 57.3
CANSAT56G0535 Cannabis sativa HOM05D003259 ORTHO05D003695 3.4e-18 94.7 82 54.9
Eucgr.D00194 Eucalyptus grandis HOM05D003259 ORTHO05D003695 3.4e-18 94.7 82 54.9
Manes.05G079300 Manihot esculenta HOM05D003259 ORTHO05D003695 3.4e-18 94.7 82 54.9
TPR.G25883 Trifolium pratense HOM05D003259 ORTHO05D003695 3.4e-18 94.7 82 54.9
arahy.Tifrunner.gnm1.ann1.BRW3YU Arachis hypogaea HOM05D003259 ORTHO05D003695 4.5e-18 94.4 82 54.9
arahy.Tifrunner.gnm1.ann1.MJA9UR Arachis hypogaea HOM05D003259 ORTHO05D003695 4.5e-18 94.4 82 54.9
LjContig00222g0022811 Lotus japonicus HOM05D003259 ORTHO05D003695 4.5e-18 94.4 82 54.9
Ciclev10005907m.g Citrus clementina HOM05D003259 ORTHO05D003695 5.8e-18 94.0 82 53.7
FvH4_7g08790 Fragaria vesca HOM05D003259 ORTHO05D003695 5.8e-18 94.0 82 54.9
FAN06G0247 Fragaria x ananassa HOM05D003259 ORTHO05D003695 5.8e-18 94.0 82 54.9
FAN10G0354 Fragaria x ananassa HOM05D003259 ORTHO05D003695 5.8e-18 94.0 82 54.9
FAN10G2013 Fragaria x ananassa HOM05D003259 ORTHO05D003695 5.8e-18 94.0 82 54.9
Lalb_Chr05g0211141 Lupinus albus HOM05D003259 ORTHO05D003695 5.8e-18 94.0 82 54.9
Medtr5g006840 Medicago truncatula HOM05D003259 ORTHO05D003695 5.8e-18 94.0 82 54.9
Pp3c20_18180 Physcomitrium patens HOM05D003259 ORTHO05D003695 5.8e-18 94.0 82 54.9
Psat0s2648g0080 Pisum sativum HOM05D003259 ORTHO05D003695 5.8e-18 94.0 82 54.9
Sabra10G0058500 Salix brachista HOM05D003259 ORTHO05D003695 5.8e-18 94.0 82 53.7
Sed0006877 Sechium edule HOM05D003259 ORTHO05D003695 5.8e-18 94.0 82 54.9
TPR.G37956 Trifolium pratense HOM05D003259 ORTHO05D003695 5.8e-18 94.0 82 54.9
TWI09G1548 Tripterygium wilfordii HOM05D003259 ORTHO05D003695 5.8e-18 94.0 82 53.7
AT4G14800 Arabidopsis thaliana HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 53.7
EL10Ac3g06480 Beta vulgaris HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 53.7
BcaC09g50161 Brassica carinata HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 52.4
BcaNung00332 Brassica carinata HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 52.4
A01p22750 Brassica napus HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 52.4
C01p28310 Brassica napus HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 52.4
BolC1t02760H Brassica oleracea HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 52.4
BraA01t02187Z Brassica rapa HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 52.4
CiPaw.01G198200 Carya illinoinensis HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 54.9
CiPaw.02G122900 Carya illinoinensis HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 54.9
Eucgr.H03435 Eucalyptus grandis HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 53.7
Thhalv10026266m.g Eutrema salsugineum HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 52.4
FvH4_4g15960 Fragaria vesca HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 54.9
FAN03G0633 Fragaria x ananassa HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 54.9
FAN12G1048 Fragaria x ananassa HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 54.9
Medtr5g012470 Medicago truncatula HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 54.9
Potri.008G155500 Populus trichocarpa HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 53.7
RcHm_v2.0_Chr4g0415561 Rosa chinensis HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 54.9
Sp7g12930 Schrenkiella parvula HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 52.4
SEGI_38748 Sequoiadendron giganteum HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 54.9
Sc13g0004590 Simmondsia chinensis HOM05D003259 ORTHO05D003695 7.6e-18 93.6 82 53.7
Aa31LG9G2570 Aethionema arabicum HOM05D003259 ORTHO05D003695 1.0e-17 93.2 82 52.4
BcaB04g18261 Brassica carinata HOM05D003259 ORTHO05D003695 1.0e-17 93.2 82 52.4
BcaC07g37854 Brassica carinata HOM05D003259 ORTHO05D003695 1.0e-17 93.2 82 52.4
BolC8t48244H Brassica oleracea HOM05D003259 ORTHO05D003695 1.0e-17 93.2 82 52.4
ClCG06G006350 Citrullus lanatus HOM05D003259 ORTHO05D003695 1.0e-17 93.2 82 53.7
COL.COLO4_21517 Corchorus olitorius HOM05D003259 ORTHO05D003695 1.0e-17 93.2 82 53.7
Duzib212G0469 Durio zibethinus HOM05D003259 ORTHO05D003695 1.0e-17 93.2 82 53.7
Gohir.A02G032700 Gossypium hirsutum HOM05D003259 ORTHO05D003695 1.0e-17 93.2 82 53.7
TAR362G0533 Trochodendron aralioides HOM05D003259 ORTHO05D003695 1.0e-17 93.2 82 53.7
BcaC08g44272 Brassica carinata HOM05D003259 ORTHO05D003695 1.3e-17 92.8 82 52.4
A05p15600 Brassica napus HOM05D003259 ORTHO05D003695 1.3e-17 92.8 82 52.4
A05p16740 Brassica napus HOM05D003259 ORTHO05D003695 1.3e-17 92.8 82 52.4
C06p16930 Brassica napus HOM05D003259 ORTHO05D003695 1.3e-17 92.8 82 52.4
BolC6t36889H Brassica oleracea HOM05D003259 ORTHO05D003695 1.3e-17 92.8 82 52.4
BraA05t20475Z Brassica rapa HOM05D003259 ORTHO05D003695 1.3e-17 92.8 82 52.4
BraA05t20578Z Brassica rapa HOM05D003259 ORTHO05D003695 1.3e-17 92.8 82 52.4
Cpa.g.sc54.84 Carica papaya HOM05D003259 ORTHO05D003695 1.3e-17 92.8 82 54.9
Cc03_g04050 Coffea canephora HOM05D003259 ORTHO05D003695 1.3e-17 92.8 82 54.9
Duzib151G0089 Durio zibethinus HOM05D003259 ORTHO05D003695 1.3e-17 92.8 82 53.7
FAN01G0310 Fragaria x ananassa HOM05D003259 ORTHO05D003695 1.3e-17 92.8 82 53.7
Gohir.D02G039400 Gossypium hirsutum HOM05D003259 ORTHO05D003695 1.3e-17 92.8 82 52.4
Gorai.005G043600 Gossypium raimondii HOM05D003259 ORTHO05D003695 1.3e-17 92.8 82 52.4
Hma1.2p1_1572F.1_g291460 Hydrangea macrophylla HOM05D003259 ORTHO05D003695 1.3e-17 92.8 82 54.9
Hma1.2p1_2201F.1_g317046 Hydrangea macrophylla HOM05D003259 ORTHO05D003695 1.3e-17 92.8 82 54.9
Mapoly0044s0041 Marchantia polymorpha HOM05D003259 ORTHO05D003695 1.3e-17 92.8 82 53.7
QL08p013026 Quercus lobata HOM05D003259 ORTHO05D003695 1.3e-17 92.8 82 53.7
Hund12101 Selenicereus undatus HOM05D003259 ORTHO05D003695 1.3e-17 92.8 82 53.7
Thecc.04G235300 Theobroma cacao HOM05D003259 ORTHO05D003695 1.3e-17 92.8 82 53.7
VMungo0720G2628 Vigna mungo HOM05D003259 ORTHO05D003695 1.3e-17 92.8 82 53.7
Ah.07g204220 Amaranthus hybridus HOM05D003259 ORTHO05D003695 1.7e-17 92.4 82 53.7
AL3G36920 Arabidopsis lyrata HOM05D003259 ORTHO05D003695 1.7e-17 92.4 82 52.4
AL7G41070 Arabidopsis lyrata HOM05D003259 ORTHO05D003695 1.7e-17 92.4 82 52.4
AT3G22630 Arabidopsis thaliana HOM05D003259 ORTHO05D003695 1.7e-17 92.4 82 52.4
BcaB04g20508 Brassica carinata HOM05D003259 ORTHO05D003695 1.7e-17 92.4 82 52.4
Carub.0003s2277 Capsella rubella HOM05D003259 ORTHO05D003695 1.7e-17 92.4 82 52.4
CARHR098490 Cardamine hirsuta HOM05D003259 ORTHO05D003695 1.7e-17 92.4 82 52.4
Glyma.10G295600 Glycine max HOM05D003259 ORTHO05D003695 1.7e-17 92.4 82 53.7
Glyma.20G245500 Glycine max HOM05D003259 ORTHO05D003695 1.7e-17 92.4 82 53.7
Manes.15G030800 Manihot esculenta HOM05D003259 ORTHO05D003695 1.7e-17 92.4 82 53.7
Nn1g02376 Nelumbo nucifera HOM05D003259 ORTHO05D003695 1.7e-17 92.4 82 53.7
Peaxi162Scf00092g00321 Petunia axillaris HOM05D003259 ORTHO05D003695 1.7e-17 92.4 82 52.4
Phvul.007G004300 Phaseolus vulgaris HOM05D003259 ORTHO05D003695 1.7e-17 92.4 82 53.7
Psat0s1985g0120 Pisum sativum HOM05D003259 ORTHO05D003695 1.7e-17 92.4 82 52.4
Sp3g20390 Schrenkiella parvula HOM05D003259 ORTHO05D003695 1.7e-17 92.4 82 52.4
HPP92_001911 Vanilla planifolia HOM05D003259 ORTHO05D003695 1.7e-17 92.4 82 52.4
Ah.16g101520 Amaranthus hybridus HOM05D003259 ORTHO05D003695 2.2e-17 92.0 82 52.4
CARHR221350 Cardamine hirsuta HOM05D003259 ORTHO05D003695 2.2e-17 92.0 82 51.2
ECA236G4966 Erigeron canadensis HOM05D003259 ORTHO05D003695 2.2e-17 92.0 82 53.7
BcaC05g28030 Brassica carinata HOM05D003259 ORTHO05D003695 2.9e-17 91.7 82 52.4
C05p40450 Brassica napus HOM05D003259 ORTHO05D003695 2.9e-17 91.7 82 52.4
BolC5t32787H Brassica oleracea HOM05D003259 ORTHO05D003695 2.9e-17 91.7 82 52.4
COL.COLO4_11870 Corchorus olitorius HOM05D003259 ORTHO05D003695 2.9e-17 91.7 82 52.4
Lsat_1_v5_gn_4_26160 Lactuca sativa HOM05D003259 ORTHO05D003695 2.9e-17 91.7 82 52.4
Nn6g34120 Nelumbo nucifera HOM05D003259 ORTHO05D003695 2.9e-17 91.7 82 51.2
Pp3c9_3580 Physcomitrium patens HOM05D003259 ORTHO05D003695 2.9e-17 91.7 82 56.1
Atru.ctg752_3.41 Acer truncatum HOM05D003259 ORTHO05D003695 3.8e-17 91.3 82 51.2
BcaB06g26377 Brassica carinata HOM05D003259 ORTHO05D003695 3.8e-17 91.3 82 52.4
A05p26050 Brassica napus HOM05D003259 ORTHO05D003695 3.8e-17 91.3 82 52.4
Cfa008471 Carpinus fangiana HOM05D003259 ORTHO05D003695 3.8e-17 91.3 82 52.4
Haze_11202 Corylus avellana HOM05D003259 ORTHO05D003695 3.8e-17 91.3 82 52.4
Hma1.2p1_0602F.1_g187520 Hydrangea macrophylla HOM05D003259 ORTHO05D003695 3.8e-17 91.3 82 53.7
Lj6A602G55 Lonicera japonica HOM05D003259 ORTHO05D003695 3.8e-17 91.3 82 53.7
Lj6A605G73 Lonicera japonica HOM05D003259 ORTHO05D003695 3.8e-17 91.3 82 53.7
ATR0665G219 Amborella trichopoda HOM05D003259 ORTHO05D003695 4.9e-17 90.9 82 51.2
ATR0665G448 Amborella trichopoda HOM05D003259 ORTHO05D003695 4.9e-17 90.9 82 51.2
arahy.Tifrunner.gnm1.ann1.1L9YJM Arachis hypogaea HOM05D003259 ORTHO05D003695 4.9e-17 90.9 82 52.4
arahy.Tifrunner.gnm1.ann1.JLXU2D Arachis hypogaea HOM05D003259 ORTHO05D003695 4.9e-17 90.9 82 53.7
BraA05t21489Z Brassica rapa HOM05D003259 ORTHO05D003695 4.9e-17 90.9 81 53.1
CSS0015937 Camellia sinensis var. sinensis HOM05D003259 ORTHO05D003695 4.9e-17 90.9 82 53.7
ClCG05G005040 Citrullus lanatus HOM05D003259 ORTHO05D003695 4.9e-17 90.9 82 52.4
MELO3C006517.2 Cucumis melo HOM05D003259 ORTHO05D003695 4.9e-17 90.9 82 52.4
CsaV3_3G013100 Cucumis sativus L. HOM05D003259 ORTHO05D003695 4.9e-17 90.9 82 52.4
Dinv14018 Davidia involucrata HOM05D003259 ORTHO05D003695 4.9e-17 90.9 82 52.4
Actinidia08482 Actinidia chinensis HOM05D003259 ORTHO05D003695 6.5e-17 90.5 82 53.7
AUR62018258 Chenopodium quinoa HOM05D003259 ORTHO05D003695 6.5e-17 90.5 82 48.8
AUR62033663 Chenopodium quinoa HOM05D003259 ORTHO05D003695 6.5e-17 90.5 82 48.8
AUR62034724 Chenopodium quinoa HOM05D003259 ORTHO05D003695 6.5e-17 90.5 82 48.8
Thhalv10021541m.g Eutrema salsugineum HOM05D003259 ORTHO05D003695 6.5e-17 90.5 82 51.2
Manes.03G175800 Manihot esculenta HOM05D003259 ORTHO05D003695 8.4e-17 90.1 82 51.2
Sed0022685 Sechium edule HOM05D003259 ORTHO05D003695 8.4e-17 90.1 82 51.2
Actinidia36948 Actinidia chinensis HOM05D003259 ORTHO05D003695 1.1e-16 89.7 82 53.7
Nitab4.5_0002307g0060 Nicotiana tabacum HOM05D003259 ORTHO05D003695 1.1e-16 89.7 82 51.2
Nitab4.5_0004062g0050 Nicotiana tabacum HOM05D003259 ORTHO05D003695 1.1e-16 89.7 82 51.2
Os03g0695600 Oryza sativa ssp. japonica HOM05D003259 ORTHO05D003695 1.1e-16 89.7 82 53.7
PGR004G2164 Punica granatum HOM05D003259 ORTHO05D003695 1.1e-16 89.7 82 53.7
Sabra08G0118300 Salix brachista HOM05D003259 ORTHO05D003695 1.1e-16 89.7 82 51.2
SalBow2G2299 Salvia bowleyana HOM05D003259 ORTHO05D003695 1.1e-16 89.7 82 51.2
Zm00001eb216990 Zea mays HOM05D003259 ORTHO05D003695 1.1e-16 89.7 82 53.7
CSS0029971 Camellia sinensis var. sinensis HOM05D003259 ORTHO05D003695 1.4e-16 89.4 82 52.4
Sed0017593 Sechium edule HOM05D003259 ORTHO05D003695 1.4e-16 89.4 82 51.2
CDE07G1821 Ceratophyllum demersum HOM05D003259 ORTHO05D002832 1.9e-16 89.0 75 57.3
HanXRQChr17g0565551 Helianthus annuus HOM05D003259 ORTHO05D003695 1.9e-16 89.0 82 51.2
PSO210G2325 Papaver somniferum HOM05D003259 ORTHO05D003695 1.9e-16 89.0 82 51.2
PSO761G0105 Papaver somniferum HOM05D003259 ORTHO05D003695 1.9e-16 89.0 82 51.2
Actinidia40133 Actinidia chinensis HOM05D003259 ORTHO05D003695 2.5e-16 88.6 82 52.4
Aqoxy5G00437 Aquilegia oxysepala HOM05D003259 ORTHO05D003695 2.5e-16 88.6 82 51.2
CAN.G1094.26 Capsicum annuum HOM05D003259 ORTHO05D003695 2.5e-16 88.6 82 50.0
Dinv09872 Davidia involucrata HOM05D003259 ORTHO05D003695 2.5e-16 88.6 82 53.7
HanXRQChr16g0526461 Helianthus annuus HOM05D003259 ORTHO05D003695 2.5e-16 88.6 82 51.2
Migut.G00362 Erythranthe guttata HOM05D003259 ORTHO05D003695 3.2e-16 88.2 82 50.0
TAR633G1233 Trochodendron aralioides HOM05D003259 ORTHO05D003695 4.2e-16 87.8 82 50.0
MSTRG.9968 Avicennia marina HOM05D003259 ORTHO05D003695 5.5e-16 87.4 82 51.2
BcaNung06727 Brassica carinata HOM05D003259 ORTHO05D003695 5.5e-16 87.4 73 53.4
Lj3A732G69 Lonicera japonica HOM05D003259 ORTHO05D003695 5.5e-16 87.4 82 51.2
MSTRG.4045 Avicennia marina HOM05D003259 ORTHO05D003695 7.1e-16 87.0 82 50.0
Solyc09g082320.3 Solanum lycopersicum HOM05D003259 ORTHO05D003695 7.1e-16 87.0 82 48.8
Sopen09g031200 Solanum pennellii HOM05D003259 ORTHO05D003695 7.1e-16 87.0 82 48.8
PGSC0003DMG400032248 Solanum tuberosum HOM05D003259 ORTHO05D003695 7.1e-16 87.0 82 48.8
Zm00001eb053790 Zea mays HOM05D003259 ORTHO05D003695 1.2e-15 86.3 82 52.4
unitig_32.g11726 Utricularia gibba HOM05D003259 ORTHO05D003695 1.6e-15 85.9 82 50.0
unitig_748.g8540 Utricularia gibba HOM05D003259 ORTHO05D003695 1.6e-15 85.9 82 50.0
MBI01_g46397_MAGBIO Magnolia biondii HOM05D003259 ORTHO05D003695 3.0e-14 81.6 82 51.2
DCAR_027230 Daucus carota HOM05D003259 ORTHO05D003695 5.1e-14 80.9 82 47.6
Rhsim04G0199900 Rhododendron simsii HOM05D003259 ORTHO05D003695 1.9e-13 79.0 71 53.5
BcaC09g49185 Brassica carinata HOM05D003259 ORTHO05D003695 3.3e-13 78.2 84 47.6
C01p41690 Brassica napus HOM05D003259 ORTHO05D003695 5.7e-13 77.4 83 49.4
Cre14.g610950 Chlamydomonas reinhardtii HOM05D003259 ORTHO05D003695 7.4e-13 77.0 82 47.6
SGA_v2.0_scaffold191G40492 Striga asiatica HOM05D003259 ORTHO05D003695 3.7e-12 74.7 114 38.6
PRCOL_00001675 Prasinoderma coloniale HOM05D003259 ORTHO05D003695 5.8e-10 67.4 81 42.0
AUR62037750 Chenopodium quinoa HOM05D003259 ORTHO05D003695 6.5e-09 63.9 82 40.2
Ca_24419_v3 Cicer arietinum L. HOM05D003259 ORTHO05D003695 8.4e-09 63.5 52 55.8
BcaC02g11604 Brassica carinata HOM05D003259 ORTHO05D003695 1.4e-08 62.8 54 51.9
Oeu053320.1 Olea europaea HOM05D003259 ORTHO05D003695 1.6e-07 59.3 52 51.9
C04p13400 Brassica napus HOM05D003259 ORTHO05D003695 3.5e-07 58.2 48 54.2
vmacro08790 Vaccinium macrocarpon HOM05D003259 ORTHO05D003695 3.5e-07 58.2 51 51.0
A01p32530 Brassica napus HOM05D003259 ORTHO05D003695 4.6e-07 57.8 52 51.9
GSVIVG01001182001 Vitis vinifera HOM05D003259 ORTHO05D003695 6.7e-06 53.9 45 55.6


User provided reference genes

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