Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO08G232 Micromonas commoda HOM05D003244 ORTHO05D003645 7.3e-192 674.1 400 100.0
Cre01.g063997 Chlamydomonas reinhardtii HOM05D003244 ORTHO05D003645 1.8e-20 104.8 288 38.2
PRCOL_00001567 Prasinoderma coloniale HOM05D003244 ORTHO05D003645 8.7e-20 102.4 390 32.8
Pp3c1_22620 Physcomitrium patens HOM05D003244 ORTHO05D003645 2.1e-18 97.8 249 35.3
Pp3c2_16780 Physcomitrium patens HOM05D003244 ORTHO05D003645 1.4e-17 95.1 209 37.3
Mapoly0009s0229 Marchantia polymorpha HOM05D003244 ORTHO05D003645 3.1e-17 94.0 322 32.3
Nn6g35582 Nelumbo nucifera HOM05D003244 ORTHO05D003645 3.1e-17 94.0 247 32.0
BcaNung06450 Brassica carinata HOM05D003244 ORTHO05D003645 4.1e-17 93.6 251 32.7
AT1G54170 Arabidopsis thaliana HOM05D003244 ORTHO05D003645 1.2e-16 92.0 208 34.1
PSO063G5495 Papaver somniferum HOM05D003244 ORTHO05D003645 1.2e-16 92.0 247 31.6
PSO421G0240 Papaver somniferum HOM05D003244 ORTHO05D003645 1.2e-16 92.0 247 31.6
A01p39610 Brassica napus HOM05D003244 ORTHO05D003645 1.5e-16 91.7 253 32.0
BraA01t04001Z Brassica rapa HOM05D003244 ORTHO05D003645 1.5e-16 91.7 253 32.0
SalBow6G2321 Salvia bowleyana HOM05D003244 ORTHO05D003645 1.5e-16 91.7 243 32.1
BcaNung04893 Brassica carinata HOM05D003244 ORTHO05D003645 3.4e-16 90.5 253 32.0
C01p50550 Brassica napus HOM05D003244 ORTHO05D003645 3.4e-16 90.5 253 32.0
BolC1t05006H Brassica oleracea HOM05D003244 ORTHO05D003645 3.4e-16 90.5 253 32.0
CBR_g52348 Chara braunii HOM05D003244 ORTHO05D003645 4.5e-16 90.1 260 32.7
CARHR044520 Cardamine hirsuta HOM05D003244 ORTHO05D003645 1.3e-15 88.6 207 33.8
DCAR_016132 Daucus carota HOM05D003244 ORTHO05D003645 2.2e-15 87.8 247 30.8
Carub.0001s4341 Capsella rubella HOM05D003244 ORTHO05D003645 2.9e-15 87.4 244 31.1
Manes.11G022200 Manihot esculenta HOM05D003244 ORTHO05D003645 2.9e-15 87.4 244 31.6
THA.LOC104810365 Tarenaya hassleriana HOM05D003244 ORTHO05D003645 2.9e-15 87.4 248 31.5
SMO364G0079 Selaginella moellendorffii HOM05D003244 ORTHO05D003645 3.8e-15 87.0 416 29.8
Sp3g12260 Schrenkiella parvula HOM05D003244 ORTHO05D003645 5.0e-15 86.7 247 32.0
Sabra01G0140200 Salix brachista HOM05D003244 ORTHO05D003645 6.5e-15 86.3 259 32.0
AL1G62890 Arabidopsis lyrata HOM05D003244 ORTHO05D003645 1.4e-14 85.1 208 33.2
BolC3t16936H Brassica oleracea HOM05D003244 ORTHO05D003645 1.9e-14 84.7 247 31.6
CsaV3_3G043570 Cucumis sativus L. HOM05D003244 ORTHO05D003645 1.9e-14 84.7 252 30.6
Rhsim12G0208900 Rhododendron simsii HOM05D003244 ORTHO05D003645 1.9e-14 84.7 250 30.0
Actinidia39089 Actinidia chinensis HOM05D003244 ORTHO05D003645 2.5e-14 84.3 249 31.7
C03p46710 Brassica napus HOM05D003244 ORTHO05D003645 2.5e-14 84.3 247 31.6
Nn8g38728 Nelumbo nucifera HOM05D003244 ORTHO05D003645 4.2e-14 83.6 247 31.6
Phvul.005G156000 Phaseolus vulgaris HOM05D003244 ORTHO05D003645 4.2e-14 83.6 247 31.2
Lj9A522G71 Lonicera japonica HOM05D003244 ORTHO05D003645 5.5e-14 83.2 224 32.1
THA.LOC104815625 Tarenaya hassleriana HOM05D003244 ORTHO05D003645 5.5e-14 83.2 246 30.9
BcaC01g03960 Brassica carinata HOM05D003244 ORTHO05D003645 7.2e-14 82.8 247 31.2
BraA03t13007Z Brassica rapa HOM05D003244 ORTHO05D003645 7.2e-14 82.8 247 31.6
FAN09G4047 Fragaria x ananassa HOM05D003244 ORTHO05D003645 7.2e-14 82.8 246 31.3
SalBow7G3930 Salvia bowleyana HOM05D003244 ORTHO05D003645 7.2e-14 82.8 244 30.7
AagrBONN_evm.TU.Sc2ySwM_117.2057 Anthoceros agrestis HOM05D003244 ORTHO05D003645 9.3e-14 82.4 232 32.3
A03p38600 Brassica napus HOM05D003244 ORTHO05D003645 9.3e-14 82.4 247 31.6
Thhalv10020519m.g Eutrema salsugineum HOM05D003244 ORTHO05D003645 9.3e-14 82.4 246 31.3
Psat5g290880 Pisum sativum HOM05D003244 ORTHO05D003645 9.3e-14 82.4 249 32.9
SGA_v2.0_scaffold68G22885 Striga asiatica HOM05D003244 ORTHO05D003645 9.3e-14 82.4 244 30.3
Zm00001eb202950 Zea mays HOM05D003244 ORTHO05D003645 9.3e-14 82.4 243 32.9
Cpa.g.sc25.97 Carica papaya HOM05D003244 ORTHO05D003645 1.2e-13 82.0 255 31.4
Ca_01233_v3 Cicer arietinum L. HOM05D003244 ORTHO05D003645 1.2e-13 82.0 245 31.4
Potri.001G171100 Populus trichocarpa HOM05D003244 ORTHO05D003645 1.2e-13 82.0 259 31.7
BcaB04g18816 Brassica carinata HOM05D003244 ORTHO05D003645 1.6e-13 81.6 209 33.5
ClCG07G013970 Citrullus lanatus HOM05D003244 ORTHO05D003645 1.6e-13 81.6 246 30.5
FvH4_6g34380 Fragaria vesca HOM05D003244 ORTHO05D003645 1.6e-13 81.6 246 31.3
FAN14G0986 Fragaria x ananassa HOM05D003244 ORTHO05D003645 1.6e-13 81.6 246 31.3
Lj5C39G2 Lonicera japonica HOM05D003244 ORTHO05D003645 1.6e-13 81.6 249 30.1
Manes.04G142700 Manihot esculenta HOM05D003244 ORTHO05D003645 1.6e-13 81.6 244 30.3
Carub.0003s1359 Capsella rubella HOM05D003244 ORTHO05D003645 2.1e-13 81.3 248 31.0
MELO3C025813.2 Cucumis melo HOM05D003244 ORTHO05D003645 2.1e-13 81.3 252 30.2
Sed0005467 Sechium edule HOM05D003244 ORTHO05D003645 2.1e-13 81.3 248 29.8
SMO112G0047 Selaginella moellendorffii HOM05D003244 ORTHO05D003645 2.1e-13 81.3 335 31.0
MSTRG.9512 Avicennia marina HOM05D003244 ORTHO05D003645 2.7e-13 80.9 246 30.9
EL10Ac9g21941 Beta vulgaris HOM05D003244 ORTHO05D003645 2.7e-13 80.9 248 31.5
BcaC08g43597 Brassica carinata HOM05D003244 ORTHO05D003645 2.7e-13 80.9 213 32.4
C06p09950 Brassica napus HOM05D003244 ORTHO05D003645 2.7e-13 80.9 213 32.4
MSTRG.4785 Avicennia marina HOM05D003244 ORTHO05D003645 3.5e-13 80.5 252 31.3
CANSAT56G4312 Cannabis sativa HOM05D003244 ORTHO05D003645 3.5e-13 80.5 247 30.0
CAN.G862.25 Capsicum annuum HOM05D003244 ORTHO05D003645 3.5e-13 80.5 249 31.3
FAN02G3680 Fragaria x ananassa HOM05D003244 ORTHO05D003645 3.5e-13 80.5 246 30.9
FAN05G2950 Fragaria x ananassa HOM05D003244 ORTHO05D003645 3.5e-13 80.5 246 30.5
Oeu058715.1 Olea europaea HOM05D003244 ORTHO05D003645 3.5e-13 80.5 245 30.2
Dinv04023 Davidia involucrata HOM05D003244 ORTHO05D003645 4.6e-13 80.1 246 30.1
vmacro22213 Vaccinium macrocarpon HOM05D003244 ORTHO05D003645 4.6e-13 80.1 248 29.8
Rhsim08G0237100 Rhododendron simsii HOM05D003244 ORTHO05D003645 6.1e-13 79.7 243 30.5
RcHm_v2.0_Chr2g0144721 Rosa chinensis HOM05D003244 ORTHO05D003645 6.1e-13 79.7 246 31.3
SGA_v2.0_scaffold4G02059 Striga asiatica HOM05D003244 ORTHO05D003645 6.1e-13 79.7 244 29.5
VMungo0331G0221 Vigna mungo HOM05D001762 ORTHO05D001774 6.1e-13 79.7 244 29.5
A05p17720 Brassica napus HOM05D003244 ORTHO05D003645 7.9e-13 79.3 237 30.4
BraA05t20663Z Brassica rapa HOM05D003244 ORTHO05D003645 7.9e-13 79.3 237 30.4
COL.COLO4_30782 Corchorus olitorius HOM05D003244 ORTHO05D003645 7.9e-13 79.3 246 30.1
MD17G1171000 Malus domestica HOM05D003244 ORTHO05D003645 7.9e-13 79.3 244 29.5
Os02g0480900 Oryza sativa ssp. japonica HOM05D003244 ORTHO05D003645 7.9e-13 79.3 243 32.5
Zm00001eb241130 Zea mays HOM05D003244 ORTHO05D003645 7.9e-13 79.3 242 31.4
AT3G14010 Arabidopsis thaliana HOM05D003244 ORTHO05D003645 1.0e-12 79.0 246 29.7
BcaC08g44167 Brassica carinata HOM05D003244 ORTHO05D003645 1.0e-12 79.0 206 33.0
AUR62016380 Chenopodium quinoa HOM05D003244 ORTHO05D003645 1.0e-12 79.0 248 33.1
Haze_16008 Corylus avellana HOM05D003244 ORTHO05D003645 1.0e-12 79.0 248 29.4
Sed0027854 Sechium edule HOM05D003244 ORTHO05D003645 1.0e-12 79.0 215 31.2
Solyc06g062860.4 Solanum lycopersicum HOM05D003244 ORTHO05D003645 1.0e-12 79.0 249 29.3
Aa31LG8G1220 Aethionema arabicum HOM05D003244 ORTHO05D003645 1.3e-12 78.6 246 31.3
Aqoxy7G01099 Aquilegia oxysepala HOM05D003244 ORTHO05D003645 1.3e-12 78.6 245 30.2
AUR62011561 Chenopodium quinoa HOM05D003244 ORTHO05D003645 1.3e-12 78.6 248 32.7
PGR102G1386 Punica granatum HOM05D003244 ORTHO05D003645 1.3e-12 78.6 245 30.6
unitig_8.g3564 Utricularia gibba HOM05D003244 ORTHO05D003645 1.3e-12 78.6 253 31.6
AL3G26210 Arabidopsis lyrata HOM05D003244 ORTHO05D003645 1.8e-12 78.2 246 29.3
Dinv37877 Davidia involucrata HOM05D003244 ORTHO05D003645 1.8e-12 78.2 246 30.5
Phvul.010G133101 Phaseolus vulgaris HOM05D003244 ORTHO05D003645 1.8e-12 78.2 245 30.6
Psat4g183560 Pisum sativum HOM05D003244 ORTHO05D003645 1.8e-12 78.2 245 31.8
TAR383G0203 Trochodendron aralioides HOM05D003244 ORTHO05D003645 1.8e-12 78.2 279 30.1
A06p00490 Brassica napus HOM05D003244 ORTHO05D003645 2.3e-12 77.8 213 31.0
Migut.D00945 Erythranthe guttata HOM05D003244 ORTHO05D003645 2.3e-12 77.8 244 29.5
VMungo1080G0053 Vigna mungo HOM05D003244 ORTHO05D003645 2.3e-12 77.8 247 30.0
Ah.01g020820 Amaranthus hybridus HOM05D003244 ORTHO05D003645 3.0e-12 77.4 248 31.9
CDE07G0771 Ceratophyllum demersum HOM05D003244 ORTHO05D003645 3.0e-12 77.4 208 30.8
Gohir.D04G009200 Gossypium hirsutum HOM05D003244 ORTHO05D003645 3.0e-12 77.4 247 30.8
Gorai.012G011100 Gossypium raimondii HOM05D003244 ORTHO05D003645 3.0e-12 77.4 247 30.8
HanXRQChr09g0276711 Helianthus annuus HOM05D003244 ORTHO05D003645 3.0e-12 77.4 246 30.9
Hma1.2p1_0291F.1_g115240 Hydrangea macrophylla HOM05D003244 ORTHO05D003645 3.0e-12 77.4 249 29.7
MD09G1186100 Malus domestica HOM05D003244 ORTHO05D003645 3.0e-12 77.4 244 29.5
SEGI_12050 Sequoiadendron giganteum HOM05D003244 ORTHO05D003645 3.0e-12 77.4 251 30.7
Cfa003546 Carpinus fangiana HOM05D003244 ORTHO05D003645 3.9e-12 77.0 247 28.7
ECA234G2908 Erigeron canadensis HOM05D003244 ORTHO05D003645 3.9e-12 77.0 249 28.9
Glyma.15G027500 Glycine max HOM05D003244 ORTHO05D003645 3.9e-12 77.0 248 30.6
Glyma.16G005700 Glycine max HOM05D003244 ORTHO05D003645 3.9e-12 77.0 245 30.2
Solyc03g121950.3 Solanum lycopersicum HOM05D003244 ORTHO05D003645 3.9e-12 77.0 249 31.3
arahy.Tifrunner.gnm1.ann1.THNB81 Arachis hypogaea HOM05D003244 ORTHO05D003645 5.1e-12 76.6 245 31.0
CiPaw.02G137000 Carya illinoinensis HOM05D003244 ORTHO05D003645 5.1e-12 76.6 246 28.5
DCAR_007631 Daucus carota HOM05D003244 ORTHO05D003645 5.1e-12 76.6 209 32.5
TPR.G16437 Trifolium pratense HOM05D003244 ORTHO05D003645 5.1e-12 76.6 245 32.2
Duzib192G0343 Durio zibethinus HOM05D003244 ORTHO05D003645 6.7e-12 76.3 259 30.9
Gohir.A05G406400 Gossypium hirsutum HOM05D003244 ORTHO05D003645 6.7e-12 76.3 247 30.8
Sc10g0005710 Simmondsia chinensis HOM05D003244 ORTHO05D003645 6.7e-12 76.3 246 30.5
TAR626G1385 Trochodendron aralioides HOM05D003244 ORTHO05D003645 6.7e-12 76.3 246 31.3
Atru.chr1.3900 Acer truncatum HOM05D003244 ORTHO05D003645 8.7e-12 75.9 246 31.3
CARHR088820 Cardamine hirsuta HOM05D003244 ORTHO05D003645 8.7e-12 75.9 246 30.5
Sopen03g040770 Solanum pennellii HOM05D003244 ORTHO05D003645 8.7e-12 75.9 249 31.3
Thhalv10011331m.g Eutrema salsugineum HOM05D003244 ORTHO05D003645 1.1e-11 75.5 216 31.5
Glyma.07G036300 Glycine max HOM05D003244 ORTHO05D003645 1.1e-11 75.5 206 31.6
Hma1.2p1_0496F.1_g166130 Hydrangea macrophylla HOM05D003244 ORTHO05D003645 1.1e-11 75.5 246 29.7
Lj3g0017349 Lotus japonicus HOM05D003244 ORTHO05D003645 1.1e-11 75.5 245 29.4
Potri.003G063000 Populus trichocarpa HOM05D003244 ORTHO05D003645 1.1e-11 75.5 263 29.3
Prupe.7G067500 Prunus persica HOM05D003244 ORTHO05D003645 1.1e-11 75.5 246 30.5
Thecc.06G117700 Theobroma cacao HOM05D003244 ORTHO05D003645 1.1e-11 75.5 247 30.8
Lj3g0018176 Lotus japonicus HOM05D003244 ORTHO05D003645 1.5e-11 75.1 247 30.0
TPR.G6601 Trifolium pratense HOM05D003244 ORTHO05D003645 1.5e-11 75.1 247 30.0
GSVIVG01016786001 Vitis vinifera HOM05D003244 ORTHO05D003645 1.5e-11 75.1 247 31.2
Glyma.13G346900 Glycine max HOM05D003244 ORTHO05D003645 1.9e-11 74.7 246 29.7
HanXRQChr10g0312291 Helianthus annuus HOM05D003244 ORTHO05D003645 1.9e-11 74.7 246 28.5
Peaxi162Scf00038g01820 Petunia axillaris HOM05D003244 ORTHO05D003645 1.9e-11 74.7 244 31.1
Sopen06g022320 Solanum pennellii HOM05D003244 ORTHO05D003645 1.9e-11 74.7 249 28.9
Medtr8g019560 Medicago truncatula HOM05D003244 ORTHO05D003645 2.5e-11 74.3 245 30.2
Peaxi162Scf00207g01431 Petunia axillaris HOM05D003244 ORTHO05D003645 2.5e-11 74.3 144 36.8
vmacro17050 Vaccinium macrocarpon HOM05D003244 ORTHO05D003645 2.5e-11 74.3 249 29.3
arahy.Tifrunner.gnm1.ann1.62L32R Arachis hypogaea HOM05D003244 ORTHO05D003645 3.3e-11 73.9 247 31.2
Ca_05015_v3 Cicer arietinum L. HOM05D003244 ORTHO05D003645 3.3e-11 73.9 229 29.7
Medtr2g099480 Medicago truncatula HOM05D003244 ORTHO05D003645 3.3e-11 73.9 246 29.3
Nitab4.5_0011707g0020 Nicotiana tabacum HOM05D003244 ORTHO05D003645 3.3e-11 73.9 144 34.7
BcaB02g10857 Brassica carinata HOM05D003244 ORTHO05D003645 4.3e-11 73.6 127 36.2
Gohir.A10G052600 Gossypium hirsutum HOM05D003244 ORTHO05D003645 4.3e-11 73.6 245 29.4
MBI13_g11371_MAGBIO Magnolia biondii HOM05D003244 ORTHO05D003645 5.7e-11 73.2 249 29.3
arahy.Tifrunner.gnm1.ann1.S9YVIH Arachis hypogaea HOM05D003244 ORTHO05D003645 7.4e-11 72.8 247 30.8
Hund06581 Selenicereus undatus HOM05D003244 ORTHO05D003645 7.4e-11 72.8 209 31.1
Lsat_1_v5_gn_5_135681 Lactuca sativa HOM05D003244 ORTHO05D003645 9.7e-11 72.4 255 28.2
Nitab4.5_0002795g0110 Nicotiana tabacum HOM05D003244 ORTHO05D003645 9.7e-11 72.4 144 34.7
TWI31G0664 Tripterygium wilfordii HOM05D003244 ORTHO05D003645 9.7e-11 72.4 249 30.9
Lsat_1_v5_gn_4_93821 Lactuca sativa HOM05D003244 ORTHO05D003645 1.3e-10 72.0 246 28.0
Gohir.A06G192700 Gossypium hirsutum HOM05D003244 ORTHO05D003645 1.6e-10 71.6 246 30.1
Sp1g40620 Schrenkiella parvula HOM05D003244 ORTHO05D003645 1.6e-10 71.6 262 28.2
CAN.G825.19 Capsicum annuum HOM05D000544 ORTHO05D003645 2.2e-10 71.2 143 34.3
HPP92_023800 Vanilla planifolia HOM05D003244 ORTHO05D003645 2.2e-10 71.2 238 29.8
BcaB07g33253 Brassica carinata HOM05D003244 ORTHO05D003645 2.8e-10 70.9 128 33.6
arahy.Tifrunner.gnm1.ann1.7TGU71 Arachis hypogaea HOM05D003244 ORTHO05D003645 3.7e-10 70.5 206 30.6
Gohir.D06G200600 Gossypium hirsutum HOM05D003244 ORTHO05D003645 6.3e-10 69.7 246 30.1
Gorai.010G234100 Gossypium raimondii HOM05D003244 ORTHO05D003645 6.3e-10 69.7 246 30.1
ATR0724G004 Amborella trichopoda HOM05D003244 ORTHO05D003645 8.2e-10 69.3 285 29.5
CSS0016093 Camellia sinensis var. sinensis HOM05D003244 ORTHO05D003645 1.1e-09 68.9 249 28.9
Actinidia21786 Actinidia chinensis HOM05D003244 ORTHO05D003645 1.4e-09 68.6 253 28.5
Actinidia32174 Actinidia chinensis HOM05D003244 ORTHO05D003645 1.4e-09 68.6 249 29.3
CiPaw.01G221000 Carya illinoinensis HOM05D003244 ORTHO05D003645 1.4e-09 68.6 285 27.4
Lalb_Chr24g0396621 Lupinus albus HOM05D003244 ORTHO05D003645 1.4e-09 68.6 247 29.1
TWI79G0895 Tripterygium wilfordii HOM05D003244 ORTHO05D003645 1.8e-09 68.2 260 30.8
HanXRQChr12g0360461 Helianthus annuus HOM05D003244 ORTHO05D003645 2.4e-09 67.8 247 31.6
Eucgr.F03170 Eucalyptus grandis HOM05D003244 ORTHO05D003645 3.1e-09 67.4 253 26.9
Lalb_Chr14g0372621 Lupinus albus HOM05D003244 ORTHO05D003645 3.1e-09 67.4 247 28.7
C06p15680 Brassica napus HOM05D003244 ORTHO05D003645 6.9e-09 66.2 80 45.0
Nitab4.5_0002072g0120 Nicotiana tabacum HOM05D003244 ORTHO05D003645 6.9e-09 66.2 81 44.4
PSO210G5765 Papaver somniferum HOM05D003244 ORTHO05D003645 9.0e-09 65.9 251 28.7
Sabra03G0036700 Salix brachista HOM05D003244 ORTHO05D003645 1.2e-08 65.5 281 26.3
SHI10621 Sapria himalayana HOM05D003244 ORTHO05D003645 1.2e-08 65.5 79 46.8
SEGI_20749 Sequoiadendron giganteum HOM05D003244 ORTHO05D003645 1.5e-08 65.1 81 45.7
Duzib235G0409 Durio zibethinus HOM05D003244 ORTHO05D003645 3.4e-08 63.9 220 30.0
Lalb_Chr22g0352001 Lupinus albus HOM05D003244 ORTHO05D003645 4.5e-08 63.5 250 29.2
Actinidia28160 Actinidia chinensis HOM05D003244 ORTHO05D003645 7.7e-08 62.8 80 45.0
Ciclev10025086m.g Citrus clementina HOM05D003244 ORTHO05D003645 1.3e-07 62.0 314 28.0
unitig_22.g6013 Utricularia gibba HOM05D003244 ORTHO05D003645 1.4e-06 58.5 217 30.0
SGA_v2.0_scaffold68G22883 Striga asiatica HOM05D002206 ORTHO05D002219 7.2e-06 56.2 143 27.3


User provided reference genes

Program Settings