Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 1.7e-260 902.1 459 100.0
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 3.5e-104 382.9 466 48.3
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 3.5e-96 356.3 475 46.3
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.5e-94 350.9 458 43.0
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 2.5e-94 350.1 456 43.0
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 4.8e-93 345.9 456 42.8
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 1.1e-92 344.7 455 42.6
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 1.4e-92 344.4 458 40.2
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 3.1e-92 343.2 453 42.8
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 5.3e-92 342.4 453 43.3
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 6.9e-92 342.0 457 42.0
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 9.0e-92 341.7 457 42.5
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 1.5e-91 340.9 455 42.2
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 2.6e-91 340.1 453 42.6
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 3.4e-91 339.7 455 43.7
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 3.4e-91 339.7 454 41.6
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 4.5e-91 339.3 453 43.0
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 4.5e-91 339.3 453 43.0
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 7.6e-91 338.6 456 42.1
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 1.3e-90 337.8 453 41.7
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 1.3e-90 337.8 453 41.7
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 1.7e-90 337.4 457 42.0
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 3.8e-90 336.3 453 42.4
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 4.9e-90 335.9 456 42.1
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 4.9e-90 335.9 454 41.9
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 6.4e-90 335.5 453 41.7
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 6.4e-90 335.5 456 41.2
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 6.4e-90 335.5 456 41.4
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.4e-89 334.3 454 41.9
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 1.4e-89 334.3 472 40.7
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.9e-89 334.0 454 41.2
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 1.9e-89 334.0 457 41.6
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 1.9e-89 334.0 453 40.8
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 2.4e-89 333.6 454 41.6
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 5.5e-89 332.4 470 41.1
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.6e-88 330.9 453 41.9
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 2.7e-88 330.1 454 41.6
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 2.7e-88 330.1 454 41.9
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 4.6e-88 329.3 456 42.8
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 6.0e-88 328.9 454 42.5
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 7.9e-88 328.6 456 40.6
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 1.0e-87 328.2 454 41.2
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 1.0e-87 328.2 455 41.1
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 1.8e-87 327.4 453 41.9
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 2.3e-87 327.0 459 40.5
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 2.3e-87 327.0 455 41.8
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 3.0e-87 326.6 454 41.4
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 3.0e-87 326.6 455 41.3
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.0e-87 326.6 453 41.3
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 3.9e-87 326.2 454 41.4
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 5.1e-87 325.9 458 40.6
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 6.7e-87 325.5 454 42.1
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 1.9e-86 323.9 453 41.1
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 2.5e-86 323.6 454 41.2
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.5e-86 323.6 464 40.3
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 3.3e-86 323.2 454 40.1
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 3.3e-86 323.2 453 40.6
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 4.3e-86 322.8 456 41.2
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 4.3e-86 322.8 456 40.8
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 5.6e-86 322.4 470 40.9
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 5.6e-86 322.4 484 39.7
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 7.4e-86 322.0 485 38.1
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 9.6e-86 321.6 454 41.0
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 1.3e-85 321.2 454 41.0
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 1.3e-85 321.2 454 41.4
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 1.3e-85 321.2 454 41.0
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 2.1e-85 320.5 485 38.1
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.1e-85 320.5 467 39.2
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 3.7e-85 319.7 453 42.2
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 3.7e-85 319.7 502 37.8
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 3.7e-85 319.7 454 40.3
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 4.8e-85 319.3 457 40.9
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 8.2e-85 318.5 456 39.0
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 8.2e-85 318.5 454 40.3
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 1.4e-84 317.8 453 40.6
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 1.8e-84 317.4 458 41.0
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 2.4e-84 317.0 454 39.6
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 4.0e-84 316.2 454 40.7
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 4.0e-84 316.2 453 40.8
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 4.0e-84 316.2 456 39.3
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 5.3e-84 315.8 454 40.7
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.3e-84 315.8 453 40.6
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.3e-84 315.8 453 40.6
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 6.9e-84 315.5 458 40.6
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 9.0e-84 315.1 454 39.0
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.5e-83 314.3 456 39.0
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 2.0e-83 313.9 457 38.9
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 2.0e-83 313.9 457 38.5
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 2.6e-83 313.5 454 41.0
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.6e-83 313.5 457 38.1
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 2.6e-83 313.5 457 40.5
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 4.5e-83 312.8 455 40.9
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.8e-83 312.4 453 40.2
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.0e-82 311.6 457 40.0
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 2.9e-82 310.1 474 40.3
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 2.9e-82 310.1 475 38.5
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 4.9e-82 309.3 484 37.4
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 4.9e-82 309.3 462 42.0
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 6.5e-82 308.9 454 40.5
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 6.5e-82 308.9 454 40.5
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.5e-81 307.0 454 39.2
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 4.2e-81 306.2 455 40.9
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 5.5e-81 305.8 456 38.6
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 7.1e-81 305.4 456 41.0
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 2.1e-80 303.9 454 40.3
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 2.1e-80 303.9 453 40.0
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 2.1e-80 303.9 456 39.9
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 1.0e-79 301.6 457 40.0
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.0e-79 301.6 470 39.1
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 2.3e-79 300.4 388 44.3
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 6.7e-79 298.9 454 39.4
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.5e-78 297.7 403 41.7
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.9e-78 297.4 451 39.0
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 1.9e-78 297.4 423 40.9
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 5.7e-78 295.8 457 37.6
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 9.7e-78 295.0 515 37.1
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 2.2e-77 293.9 468 39.3
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 6.3e-77 292.4 451 38.4
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 1.1e-76 291.6 448 39.7
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 1.1e-76 291.6 455 40.2
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 5.3e-76 289.3 385 44.2
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 1.2e-75 288.1 409 41.8
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 3.2e-73 280.0 454 37.9
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 2.5e-70 270.4 506 35.4
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 3.7e-69 266.5 389 41.1
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 2.4e-68 263.8 410 38.5
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.3e-66 258.1 566 32.3
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 1.1e-62 245.0 313 43.8
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 2.6e-62 243.8 298 46.6
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 8.2e-61 238.8 415 38.1
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 6.5e-58 229.2 246 50.0
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 4.2e-57 226.5 324 40.7
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.6e-56 224.6 482 33.8
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 4.7e-56 223.0 213 52.1
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 3.0e-55 220.3 216 51.4
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.9e-55 219.9 305 41.0
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 7.4e-54 215.7 218 50.9
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 4.7e-48 196.4 299 41.1
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 1.3e-45 188.3 460 30.7
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.0e-38 164.5 284 40.5
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 4.4e-38 163.3 258 36.8
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 3.8e-34 150.2 258 35.3
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 1.4e-28 131.7 257 32.7
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 3.3e-25 120.6 209 35.4
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 2.1e-24 117.9 209 34.4
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 3.6e-24 117.1 125 48.0
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.0e-23 115.5 198 36.4
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 3.0e-23 114.0 113 51.3
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.5e-22 111.7 208 33.2
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 1.5e-22 111.7 203 35.0
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 3.2e-20 104.0 126 42.9
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 4.1e-20 103.6 131 44.3
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 4.6e-19 100.1 263 31.2
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 3.0e-18 97.4 111 44.1
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 3.9e-18 97.1 198 33.3
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 1.5e-17 95.1 118 44.9
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 4.3e-17 93.6 114 43.9
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.7e-16 90.1 83 57.8
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 6.8e-15 86.3 64 67.2
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 4.4e-14 83.6 175 32.0
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 1.7e-13 81.6 89 46.1
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 6.4e-13 79.7 72 52.8
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 9.5e-09 65.9 198 28.3
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 9.5e-09 65.9 79 43.0
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 2.8e-08 64.3 103 43.7
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 1.1e-07 62.4 102 42.2
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 1.4e-07 62.0 56 51.8
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 1.2e-06 58.9 81 37.0
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 9.9e-06 55.8 52 50.0


User provided reference genes

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