Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 3.8e-247 857.8 466 100.0
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 4.8e-32 143.3 416 30.5
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 7.6e-30 136.0 374 32.6
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 5.5e-28 129.8 378 32.5
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 1.6e-27 128.3 376 33.2
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.1e-27 127.9 380 32.9
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 6.0e-27 126.3 365 34.2
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.0e-26 125.6 378 31.7
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.3e-26 125.2 383 32.4
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 1.8e-26 124.8 379 32.5
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 2.3e-26 124.4 384 31.2
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 3.0e-26 124.0 381 32.8
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 3.0e-26 124.0 392 31.4
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 3.9e-26 123.6 386 31.1
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 3.9e-26 123.6 378 31.2
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 5.1e-26 123.2 381 30.7
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 5.1e-26 123.2 377 32.4
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 6.7e-26 122.9 377 31.8
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 8.7e-26 122.5 402 30.8
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.9e-25 121.3 389 32.9
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 2.5e-25 120.9 376 31.9
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.5e-25 120.9 385 31.4
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 3.3e-25 120.6 382 31.9
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 3.3e-25 120.6 400 31.0
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 4.3e-25 120.2 378 32.8
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 5.6e-25 119.8 387 32.0
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 5.6e-25 119.8 378 31.7
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 9.6e-25 119.0 382 31.2
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 9.6e-25 119.0 378 32.3
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.3e-24 118.6 382 30.6
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.3e-24 118.6 373 32.2
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.8e-24 117.5 381 31.5
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.8e-24 117.5 385 30.6
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.8e-24 117.5 392 32.7
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 2.8e-24 117.5 384 30.5
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 2.8e-24 117.5 378 31.2
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 3.7e-24 117.1 397 32.7
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 3.7e-24 117.1 335 33.1
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 4.8e-24 116.7 388 29.1
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 4.8e-24 116.7 383 30.5
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 4.8e-24 116.7 383 29.2
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 4.8e-24 116.7 377 31.0
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 6.2e-24 116.3 376 30.9
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 6.2e-24 116.3 352 31.5
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 8.1e-24 115.9 383 30.0
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 8.1e-24 115.9 344 33.7
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 8.1e-24 115.9 392 30.9
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.1e-23 115.5 382 30.9
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.1e-23 115.5 386 31.1
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.1e-23 115.5 382 30.9
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.1e-23 115.5 379 30.3
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.1e-23 115.5 382 29.8
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.4e-23 115.2 341 31.4
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.4e-23 115.2 381 31.0
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.4e-23 115.2 341 32.3
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 1.8e-23 114.8 385 30.9
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.8e-23 114.8 388 30.7
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.8e-23 114.8 351 33.6
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 2.4e-23 114.4 382 31.2
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.4e-23 114.4 335 32.5
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.4e-23 114.4 378 31.5
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 2.4e-23 114.4 385 32.5
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 3.1e-23 114.0 383 29.8
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 3.1e-23 114.0 383 29.8
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.1e-23 114.0 381 30.4
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 3.1e-23 114.0 344 33.4
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 4.0e-23 113.6 382 30.1
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 4.0e-23 113.6 381 31.5
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 4.0e-23 113.6 380 31.1
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 5.3e-23 113.2 333 33.6
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 5.3e-23 113.2 381 31.5
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 5.3e-23 113.2 381 31.5
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 5.3e-23 113.2 377 30.2
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 5.3e-23 113.2 377 31.6
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 6.9e-23 112.8 383 30.8
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 9.0e-23 112.5 337 33.8
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 9.0e-23 112.5 386 30.8
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 9.0e-23 112.5 377 31.6
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 9.0e-23 112.5 376 32.4
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.2e-22 112.1 337 32.0
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 1.2e-22 112.1 386 31.1
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.2e-22 112.1 339 32.2
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.2e-22 112.1 397 29.2
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.2e-22 112.1 377 31.3
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.5e-22 111.7 381 30.7
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 1.5e-22 111.7 343 31.5
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 2.0e-22 111.3 382 30.1
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.0e-22 111.3 420 30.0
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 2.0e-22 111.3 336 32.4
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 2.6e-22 110.9 382 30.4
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 2.6e-22 110.9 386 29.5
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 2.6e-22 110.9 299 33.4
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 3.4e-22 110.5 348 31.0
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 3.4e-22 110.5 379 29.8
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 3.4e-22 110.5 381 29.9
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 3.4e-22 110.5 388 29.9
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 3.4e-22 110.5 374 30.5
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 4.5e-22 110.2 334 32.9
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 4.5e-22 110.2 339 32.2
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 4.5e-22 110.2 380 31.1
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 5.8e-22 109.8 338 32.2
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 5.8e-22 109.8 415 29.6
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 7.6e-22 109.4 380 29.5
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 7.6e-22 109.4 334 32.9
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 7.6e-22 109.4 381 28.3
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.0e-21 109.0 384 29.2
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.0e-21 109.0 334 32.9
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.0e-21 109.0 382 30.9
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.7e-21 108.2 251 34.7
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.7e-21 108.2 344 31.7
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 1.7e-21 108.2 389 30.1
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 3.8e-21 107.1 377 30.5
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 4.9e-21 106.7 296 32.8
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 4.9e-21 106.7 257 33.5
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 4.9e-21 106.7 252 34.5
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 4.9e-21 106.7 378 30.4
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 6.5e-21 106.3 290 32.1
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 6.5e-21 106.3 290 33.1
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 8.4e-21 105.9 376 29.8
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.1e-20 105.5 382 30.1
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.9e-20 104.8 305 32.5
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 4.2e-20 103.6 382 28.5
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 5.5e-20 103.2 302 31.8
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 7.1e-20 102.8 285 33.3
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 9.3e-20 102.4 334 31.1
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 9.3e-20 102.4 305 32.1
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.2e-19 102.1 341 30.2
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 2.1e-19 101.3 382 30.1
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 3.5e-19 100.5 363 30.6
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 4.6e-19 100.1 339 30.4
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 7.9e-19 99.4 172 39.0
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 1.0e-18 99.0 244 34.0
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 1.8e-18 98.2 364 30.5
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 3.9e-18 97.1 340 30.9
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 3.9e-18 97.1 421 28.0
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 8.7e-18 95.9 418 28.7
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.1e-17 95.5 382 28.3
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.6e-16 91.7 405 28.1
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.1e-15 87.4 221 34.4
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 4.1e-15 87.0 379 28.8
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 5.3e-15 86.7 261 34.5
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 9.0e-15 85.9 227 34.4
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.6e-14 84.3 380 28.7
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 2.6e-14 84.3 240 30.8
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 3.8e-13 80.5 235 32.3
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 1.1e-12 79.0 307 26.7
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 7.2e-12 76.3 262 27.5
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 6.7e-10 69.7 380 26.3
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 9.0e-07 59.3 185 28.1
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.5e-06 57.0 213 30.5
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 4.5e-06 57.0 193 31.6


User provided reference genes

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