Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 0.0e+00 1313.9 653 100.0
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 8.8e-101 372.1 584 40.4
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 4.0e-93 346.7 578 37.7
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 4.9e-91 339.7 569 39.9
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 4.9e-91 339.7 569 38.7
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 1.1e-90 338.6 592 37.3
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 9.2e-90 335.5 568 38.4
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 1.6e-89 334.7 568 38.9
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 1.6e-89 334.7 582 38.8
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 7.8e-89 332.4 566 39.0
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 1.0e-88 332.0 568 39.1
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 6.6e-88 329.3 583 37.7
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 6.6e-88 329.3 565 39.1
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 8.6e-88 328.9 587 37.8
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 1.1e-87 328.6 580 37.9
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 1.5e-87 328.2 569 37.3
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 4.3e-87 326.6 566 36.0
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 1.6e-86 324.7 571 37.7
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 6.1e-86 322.8 567 37.4
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 1.4e-85 321.6 564 37.1
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 1.4e-85 321.6 574 37.1
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 1.4e-85 321.6 574 36.9
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 1.8e-85 321.2 567 38.1
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.8e-85 321.2 569 37.3
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 2.3e-85 320.9 566 37.1
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 3.1e-85 320.5 568 35.2
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 4.0e-85 320.1 564 37.2
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 5.2e-85 319.7 580 35.9
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 8.9e-85 318.9 564 37.1
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 2.6e-84 317.4 563 36.8
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 2.6e-84 317.4 567 36.7
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 2.6e-84 317.4 569 36.7
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 3.4e-84 317.0 572 36.4
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 4.4e-84 316.6 564 37.2
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 4.4e-84 316.6 564 36.9
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 4.4e-84 316.6 576 36.8
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 5.8e-84 316.2 564 37.1
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 7.5e-84 315.8 566 36.9
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 9.8e-84 315.5 564 37.6
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 1.3e-83 315.1 571 38.4
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 1.7e-83 314.7 568 37.0
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 1.7e-83 314.7 569 36.0
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 2.9e-83 313.9 565 35.6
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 2.9e-83 313.9 566 37.1
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 4.9e-83 313.2 583 35.5
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 4.9e-83 313.2 565 35.6
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 4.9e-83 313.2 568 36.1
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 6.4e-83 312.8 580 36.9
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 6.4e-83 312.8 567 36.3
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 6.4e-83 312.8 568 36.3
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 1.1e-82 312.0 541 37.9
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 1.4e-82 311.6 575 36.2
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 1.4e-82 311.6 563 36.1
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 2.4e-82 310.8 566 36.2
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 4.1e-82 310.1 563 36.4
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 5.4e-82 309.7 587 35.8
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 7.0e-82 309.3 564 36.3
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 7.0e-82 309.3 563 36.6
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 9.2e-82 308.9 568 36.8
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 1.6e-81 308.1 563 36.2
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 1.6e-81 308.1 600 35.5
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 2.0e-81 307.8 565 35.4
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 2.7e-81 307.4 564 36.5
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 4.6e-81 306.6 569 35.3
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 6.0e-81 306.2 566 36.9
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 1.0e-80 305.4 564 36.0
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 1.1e-79 302.0 581 34.8
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 4.3e-79 300.1 598 34.8
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 1.2e-78 298.5 582 35.2
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 1.4e-77 295.0 542 36.0
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 8.9e-77 292.4 566 35.9
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 4.4e-76 290.0 609 33.5
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 9.8e-76 288.9 580 35.2
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 2.2e-75 287.7 575 35.0
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 2.4e-74 284.3 561 34.9
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 4.6e-73 280.0 665 32.2
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 6.0e-73 279.6 620 31.8
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 6.0e-73 279.6 494 37.0
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 7.8e-73 279.3 496 37.3
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 5.1e-72 276.6 497 36.2
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 8.6e-72 275.8 494 37.4
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 3.3e-71 273.9 494 37.7
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 2.3e-69 267.7 495 36.2
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 2.0e-68 264.6 531 35.2
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 2.1e-65 254.6 553 34.5
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 2.7e-65 254.2 473 38.7
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 1.7e-64 251.5 455 37.4
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 2.8e-62 244.2 423 38.3
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 4.7e-62 243.4 496 34.5
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 1.1e-61 242.3 496 35.7
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 3.1e-61 240.7 605 30.4
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 4.3e-55 220.3 484 35.5
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 3.6e-54 217.2 543 31.7
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 1.7e-51 208.4 372 37.6
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 2.3e-48 198.0 423 34.8
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 1.5e-47 195.3 344 35.8
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 3.3e-47 194.1 257 44.7
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 1.2e-44 185.7 556 30.2
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 1.3e-43 182.2 525 28.0
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 2.2e-43 181.4 379 34.8
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 2.2e-43 181.4 258 43.8
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 3.8e-43 180.6 694 28.5
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 1.6e-41 175.3 362 32.9
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 1.0e-40 172.6 427 33.3
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 4.3e-39 167.2 320 34.7
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 1.0e-35 156.0 259 37.1
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 1.4e-34 152.1 569 26.5
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 5.5e-34 150.2 277 33.2
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 1.1e-31 142.5 495 28.1
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 1.1e-26 125.9 266 33.8
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 1.3e-24 119.0 187 35.8
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 1.5e-23 115.5 580 22.8
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 3.4e-20 104.4 172 34.3
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 2.5e-15 88.2 124 39.5
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 1.9e-10 72.0 100 36.0
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 7.2e-10 70.1 128 35.2
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.2e-09 69.3 92 42.4
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 8.8e-08 63.2 75 42.7
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 1.5e-07 62.4 117 38.5
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 2.0e-07 62.0 112 30.4


User provided reference genes

Program Settings