Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO06G171 Micromonas commoda HOM05D004713 ORTHO05D005658 9.6e-118 426.8 207 100.0
Pp3c3_35180 Physcomitrium patens HOM05D004713 ORTHO05D005658 6.5e-74 281.2 179 72.6
Pp3c8_1940 Physcomitrium patens HOM05D004713 ORTHO05D005658 3.2e-73 278.9 185 70.8
Cre11.g467689 Chlamydomonas reinhardtii HOM05D004713 ORTHO05D005658 2.7e-72 275.8 192 69.3
Mapoly0015s0074 Marchantia polymorpha HOM05D004713 ORTHO05D005658 2.3e-71 272.7 185 68.6
HanXRQChr13g0407301 Helianthus annuus HOM05D004713 ORTHO05D005658 5.2e-71 271.6 183 68.3
Lsat_1_v5_gn_0_5321 Lactuca sativa HOM05D004713 ORTHO05D005658 3.3e-70 268.9 203 62.6
AagrBONN_evm.TU.Sc2ySwM_228.1073 Anthoceros agrestis HOM05D004713 ORTHO05D005658 5.7e-70 268.1 181 68.0
CBR_g52397 Chara braunii HOM05D004713 ORTHO05D005658 1.7e-69 266.5 180 67.2
Solyc12g005630.2 Solanum lycopersicum HOM05D004713 ORTHO05D005658 4.8e-69 265.0 183 67.8
Carub.0006s3378 Capsella rubella HOM05D004713 ORTHO05D005658 2.4e-68 262.7 172 69.2
PGSC0003DMG400013751 Solanum tuberosum HOM05D004713 ORTHO05D005658 4.1e-68 261.9 198 63.1
BcaC04g23984 Brassica carinata HOM05D004713 ORTHO05D005658 5.3e-68 261.5 172 69.2
C09p02650 Brassica napus HOM05D004713 ORTHO05D005658 5.3e-68 261.5 172 69.2
BolC9t53193H Brassica oleracea HOM05D004713 ORTHO05D005658 5.3e-68 261.5 172 69.2
Sopen12g001560 Solanum pennellii HOM05D004713 ORTHO05D005658 5.3e-68 261.5 198 62.6
Sed0023828 Sechium edule HOM05D004713 ORTHO05D005658 9.1e-68 260.8 172 68.6
CARHR251730 Cardamine hirsuta HOM05D004713 ORTHO05D005658 2.0e-67 259.6 172 68.6
Hma1.2p1_2769F.1_g328190 Hydrangea macrophylla HOM05D004713 ORTHO05D005658 2.6e-67 259.2 172 69.2
AT4G03280 Arabidopsis thaliana HOM05D004713 ORTHO05D005658 4.5e-67 258.5 172 68.6
CAN.G980.4 Capsicum annuum HOM05D004713 ORTHO05D005658 4.5e-67 258.5 198 62.6
AL6G49650 Arabidopsis lyrata HOM05D004713 ORTHO05D005658 5.9e-67 258.1 172 68.0
HanXRQChr03g0077251 Helianthus annuus HOM05D004713 ORTHO05D005658 5.9e-67 258.1 205 62.4
THA.LOC104801189 Tarenaya hassleriana HOM05D004713 ORTHO05D005658 5.9e-67 258.1 172 68.6
Nn1g03832 Nelumbo nucifera HOM05D004713 ORTHO05D005658 7.7e-67 257.7 187 64.7
FAN05G5200 Fragaria x ananassa HOM05D004713 ORTHO05D005658 1.0e-66 257.3 187 65.2
FAN05G5597 Fragaria x ananassa HOM05D004713 ORTHO05D005658 1.0e-66 257.3 187 65.2
Hma1.2p1_1258F.1_g270890 Hydrangea macrophylla HOM05D004713 ORTHO05D005658 1.0e-66 257.3 172 68.0
Lj1A855G17 Lonicera japonica HOM05D004713 ORTHO05D005658 1.3e-66 256.9 194 61.3
Peaxi162Scf00485g00109 Petunia axillaris HOM05D004713 ORTHO05D005658 1.3e-66 256.9 177 66.7
Dinv13841 Davidia involucrata HOM05D004713 ORTHO05D005658 1.7e-66 256.5 174 66.7
Oeu019373.1 Olea europaea HOM05D004713 ORTHO05D005658 1.7e-66 256.5 170 68.2
TAR627G1043 Trochodendron aralioides HOM05D004713 ORTHO05D005658 1.7e-66 256.5 172 68.0
FAN02G1221 Fragaria x ananassa HOM05D004713 ORTHO05D005658 2.2e-66 256.1 187 64.7
Os07g0556200 Oryza sativa ssp. japonica HOM05D004713 ORTHO05D005658 2.2e-66 256.1 207 60.4
SMO358G0667 Selaginella moellendorffii HOM05D004713 ORTHO05D005658 2.2e-66 256.1 178 64.0
Migut.M00361 Erythranthe guttata HOM05D004713 ORTHO05D005658 3.8e-66 255.4 183 63.9
PGR083G1071 Punica granatum HOM05D004713 ORTHO05D005658 3.8e-66 255.4 174 67.8
RcHm_v2.0_Chr2g0161301 Rosa chinensis HOM05D004713 ORTHO05D005658 3.8e-66 255.4 185 64.3
FvH4_6g44370 Fragaria vesca HOM05D004713 ORTHO05D005658 5.0e-66 255.0 187 64.2
SGA_v2.0_scaffold159G37610 Striga asiatica HOM05D004713 ORTHO05D005658 5.0e-66 255.0 176 67.0
Manes.14G016000 Manihot esculenta HOM05D004713 ORTHO05D005658 6.5e-66 254.6 174 67.2
Prupe.3G228100 Prunus persica HOM05D004713 ORTHO05D005658 6.5e-66 254.6 179 67.0
GSVIVG01015713001 Vitis vinifera HOM05D004713 ORTHO05D005658 6.5e-66 254.6 197 61.4
Sabra13G0120100 Salix brachista HOM05D004713 ORTHO05D005658 8.5e-66 254.2 183 62.3
Atru.chr6.3090 Acer truncatum HOM05D004713 ORTHO05D005658 1.1e-65 253.8 170 67.6
CiPaw.11G178400 Carya illinoinensis HOM05D004713 ORTHO05D005658 1.1e-65 253.8 173 66.5
CiPaw.12G123600 Carya illinoinensis HOM05D004713 ORTHO05D005658 1.1e-65 253.8 171 68.4
AUR62025154 Chenopodium quinoa HOM05D004713 ORTHO05D005658 1.1e-65 253.8 171 68.4
Duzib248G1304 Durio zibethinus HOM05D004713 ORTHO05D005658 1.5e-65 253.4 186 64.0
ECA240G4341 Erigeron canadensis HOM05D004713 ORTHO05D005658 1.5e-65 253.4 205 60.5
MD17G1086300 Malus domestica HOM05D004713 ORTHO05D005658 1.5e-65 253.4 207 60.4
Potri.013G148900 Populus trichocarpa HOM05D004713 ORTHO05D005658 1.9e-65 253.1 183 62.8
SEGI_32030 Sequoiadendron giganteum HOM05D004713 ORTHO05D005658 1.9e-65 253.1 192 62.5
Actinidia35286 Actinidia chinensis HOM05D004713 ORTHO05D005658 2.5e-65 252.7 170 68.8
Cc05_g05920 Coffea canephora HOM05D004713 ORTHO05D005658 2.5e-65 252.7 174 67.8
Thhalv10028941m.g Eutrema salsugineum HOM05D004713 ORTHO05D005658 2.5e-65 252.7 172 67.4
Cfa020490 Carpinus fangiana HOM05D004713 ORTHO05D005658 3.2e-65 252.3 170 67.1
Ciclev10016706m.g Citrus clementina HOM05D004713 ORTHO05D005658 3.2e-65 252.3 170 67.6
GSVIVG01014457001 Vitis vinifera HOM05D004713 ORTHO05D005658 3.2e-65 252.3 197 61.4
DCAR_008695 Daucus carota HOM05D004713 ORTHO05D005658 4.2e-65 251.9 196 62.2
MSTRG.6530 Avicennia marina HOM05D004713 ORTHO05D005658 5.5e-65 251.5 174 64.4
Potri.019G118500 Populus trichocarpa HOM05D004713 ORTHO05D005658 5.5e-65 251.5 176 64.2
Zm00001eb204410 Zea mays HOM05D004713 ORTHO05D005658 5.5e-65 251.5 207 59.9
Aa31LG5G2780 Aethionema arabicum HOM05D004713 ORTHO05D005658 7.2e-65 251.1 172 67.4
CsaV3_7G004050 Cucumis sativus L. HOM05D004713 ORTHO05D005658 7.2e-65 251.1 194 61.3
SalBow7G3919 Salvia bowleyana HOM05D004713 ORTHO05D005658 7.2e-65 251.1 245 53.9
Sp6g03320 Schrenkiella parvula HOM05D004713 ORTHO05D005658 7.2e-65 251.1 172 66.3
TWI36G0474 Tripterygium wilfordii HOM05D004713 ORTHO05D005658 7.2e-65 251.1 188 64.4
A09p02620 Brassica napus HOM05D004713 ORTHO05D005658 9.4e-65 250.8 172 66.9
BraA09t35905Z Brassica rapa HOM05D004713 ORTHO05D005658 9.4e-65 250.8 172 66.9
Sc21g0002180 Simmondsia chinensis HOM05D004713 ORTHO05D005658 9.4e-65 250.8 170 67.1
BcaB01g01960 Brassica carinata HOM05D004713 ORTHO05D005658 1.2e-64 250.4 172 66.9
Manes.13G077148 Manihot esculenta HOM05D004713 ORTHO05D005658 1.6e-64 250.0 199 61.3
BcaB01g02517 Brassica carinata HOM05D004713 ORTHO05D005658 2.1e-64 249.6 172 66.3
Gohir.A03G160900 Gossypium hirsutum HOM05D004713 ORTHO05D005658 2.1e-64 249.6 172 67.4
Gohir.A03G161000 Gossypium hirsutum HOM05D004713 ORTHO05D005658 2.1e-64 249.6 172 67.4
Gohir.D02G184350 Gossypium hirsutum HOM05D004713 ORTHO05D005658 2.1e-64 249.6 172 67.4
Gorai.005G206500 Gossypium raimondii HOM05D004713 ORTHO05D005658 2.1e-64 249.6 172 67.4
Gorai.005G206600 Gossypium raimondii HOM05D004713 ORTHO05D005658 2.1e-64 249.6 172 67.4
CSS0013440 Camellia sinensis var. sinensis HOM05D004713 ORTHO05D005658 2.7e-64 249.2 170 66.5
Gohir.D02G184300 Gossypium hirsutum HOM05D004713 ORTHO05D005658 2.7e-64 249.2 172 67.4
Sabra19G0119100 Salix brachista HOM05D004713 ORTHO05D005658 2.7e-64 249.2 185 61.6
Sabra19G0134800 Salix brachista HOM05D004713 ORTHO05D005658 2.7e-64 249.2 185 61.6
Zm00001eb238370 Zea mays HOM05D004713 ORTHO05D005658 3.6e-64 248.8 206 57.8
arahy.Tifrunner.gnm1.ann1.V1P8P6 Arachis hypogaea HOM05D004713 ORTHO05D005658 4.7e-64 248.4 202 58.4
BcaC01g06693 Brassica carinata HOM05D004713 ORTHO05D005658 4.7e-64 248.4 172 65.7
A03p30490 Brassica napus HOM05D004713 ORTHO05D005658 4.7e-64 248.4 172 65.7
C03p36910 Brassica napus HOM05D004713 ORTHO05D005658 4.7e-64 248.4 172 65.7
BraA03t12231Z Brassica rapa HOM05D004713 ORTHO05D005658 4.7e-64 248.4 172 65.7
PRCOL_00002197 Prasinoderma coloniale HOM05D004713 ORTHO05D005658 4.7e-64 248.4 206 59.7
vmacro09572 Vaccinium macrocarpon HOM05D004713 ORTHO05D005658 4.7e-64 248.4 186 62.4
arahy.Tifrunner.gnm1.ann1.NN0MZU Arachis hypogaea HOM05D004713 ORTHO05D005658 6.1e-64 248.1 202 58.4
BolC3t15998H Brassica oleracea HOM05D004713 ORTHO05D005658 6.1e-64 248.1 172 65.7
Glyma.12G199400 Glycine max HOM05D004713 ORTHO05D005658 6.1e-64 248.1 170 65.9
Lalb_Chr14g0366531 Lupinus albus HOM05D004713 ORTHO05D005658 6.1e-64 248.1 174 64.4
RhsimUnG0257700 Rhododendron simsii HOM05D004713 ORTHO05D005658 6.1e-64 248.1 207 58.5
unitig_85.g27301 Utricularia gibba HOM05D004713 ORTHO05D005658 8.0e-64 247.7 187 61.0
Aqoxy1G03929 Aquilegia oxysepala HOM05D004713 ORTHO05D005658 1.0e-63 247.3 204 57.4
Lalb_Chr24g0399801 Lupinus albus HOM05D004713 ORTHO05D005658 1.0e-63 247.3 205 58.0
QL08p036617 Quercus lobata HOM05D004713 ORTHO05D005658 1.4e-63 246.9 187 62.0
VMungo1080G0078 Vigna mungo HOM05D004713 ORTHO05D005658 1.4e-63 246.9 170 65.9
CANSAT11G1961 Cannabis sativa HOM05D004713 ORTHO05D005658 1.8e-63 246.5 170 66.5
AUR62033720 Chenopodium quinoa HOM05D004713 ORTHO05D005658 2.3e-63 246.1 171 66.7
Thecc.02G168200 Theobroma cacao HOM05D004713 ORTHO05D005658 2.3e-63 246.1 174 64.9
ClCG02G001400 Citrullus lanatus HOM05D004713 ORTHO05D005658 3.0e-63 245.7 204 58.3
Hund01214 Selenicereus undatus HOM05D004713 ORTHO05D005658 3.0e-63 245.7 186 64.0
arahy.Tifrunner.gnm1.ann1.39S8LV Arachis hypogaea HOM05D004713 ORTHO05D005658 5.2e-63 245.0 202 57.9
Duzib132G0433 Durio zibethinus HOM05D004713 ORTHO05D005658 8.8e-63 244.2 186 61.8
Glyma.13G302900 Glycine max HOM05D004713 ORTHO05D005658 8.8e-63 244.2 198 58.1
arahy.Tifrunner.gnm1.ann1.F0UT86 Arachis hypogaea HOM05D004713 ORTHO05D005658 1.2e-62 243.8 170 65.3
Ah.01g014440 Amaranthus hybridus HOM05D004713 ORTHO05D005658 1.5e-62 243.4 176 64.8
ATR1132G116 Amborella trichopoda HOM05D004713 ORTHO05D005658 1.5e-62 243.4 170 67.1
MD09G1098300 Malus domestica HOM05D004713 ORTHO05D005658 1.5e-62 243.4 205 58.0
Nitab4.5_0002714g0020 Nicotiana tabacum HOM05D004713 ORTHO05D005658 2.0e-62 243.0 198 60.1
PSO541G4076 Papaver somniferum HOM05D004713 ORTHO05D005658 2.6e-62 242.7 172 64.5
PSO675G3482 Papaver somniferum HOM05D004713 ORTHO05D005658 2.6e-62 242.7 172 64.5
Phvul.005G109400 Phaseolus vulgaris HOM05D004713 ORTHO05D005658 3.3e-62 242.3 200 57.0
HPP92_001796 Vanilla planifolia HOM05D004713 ORTHO05D005658 4.4e-62 241.9 174 61.5
Cpa.g.sc34.64 Carica papaya HOM05D004713 ORTHO05D005658 5.7e-62 241.5 174 64.4
GSVIVG01000453001 Vitis vinifera HOM05D004713 ORTHO05D005658 5.7e-62 241.5 167 65.3
Haze_09549 Corylus avellana HOM05D004713 ORTHO05D005658 9.7e-62 240.7 170 64.7
Nitab4.5_0014322g0020 Nicotiana tabacum HOM05D004713 ORTHO05D005658 1.3e-61 240.4 198 59.6
Lj8C161T8 Lonicera japonica HOM05D004713 ORTHO05D005658 2.8e-61 239.2 221 54.8
FAN14G2217 Fragaria x ananassa HOM05D004713 ORTHO05D005658 3.7e-61 238.8 222 54.5
PGR042G3467 Punica granatum HOM05D004713 ORTHO05D005658 8.2e-61 237.7 205 59.0
MBI18_g36116_MAGBIO Magnolia biondii HOM05D004713 ORTHO05D005658 1.8e-60 236.5 170 65.3
SGA_v2.0_scaffold49G18316 Striga asiatica HOM05D004713 ORTHO05D005658 1.8e-60 236.5 172 64.0
Eucgr.A01769 Eucalyptus grandis HOM05D004713 ORTHO05D005658 2.4e-60 236.1 174 62.1
Psat5g267960 Pisum sativum HOM05D004713 ORTHO05D005658 2.4e-60 236.1 173 62.4
Lj3g0005468 Lotus japonicus HOM05D004713 ORTHO05D005658 9.1e-60 234.2 170 62.9
Actinidia18739 Actinidia chinensis HOM05D004713 ORTHO05D005658 3.5e-59 232.3 170 65.3
Duzib052G0720 Durio zibethinus HOM05D004713 ORTHO05D005658 3.5e-59 232.3 186 59.7
TPR.G18047 Trifolium pratense HOM05D004713 ORTHO05D005658 3.5e-59 232.3 173 61.8
Medtr2g089510 Medicago truncatula HOM05D004713 ORTHO05D005658 3.8e-58 228.8 205 54.1
Actinidia12471 Actinidia chinensis HOM05D004713 ORTHO05D005658 2.7e-56 222.6 184 58.7
EL10Ac9g20726 Beta vulgaris HOM05D004713 ORTHO05D005658 1.0e-55 220.7 170 61.2
ECA236G1690 Erigeron canadensis HOM05D004713 ORTHO05D005658 6.8e-55 218.0 195 54.9
CDE01G0070 Ceratophyllum demersum HOM05D004713 ORTHO05D005658 2.4e-52 209.5 172 58.1
FAN09G3163 Fragaria x ananassa HOM05D004713 ORTHO05D005658 2.4e-52 209.5 158 62.0
MELO3C018775.2 Cucumis melo HOM05D004713 ORTHO05D005658 7.0e-52 208.0 165 60.0
HanXRQChr15g0494521 Helianthus annuus HOM05D004713 ORTHO05D005658 3.5e-51 205.7 170 57.6
Lsat_1_v5_gn_7_105940 Lactuca sativa HOM05D004713 ORTHO05D005658 5.0e-50 201.8 209 52.2
Eucgr.F01067 Eucalyptus grandis HOM05D004713 ORTHO05D005658 3.3e-49 199.1 153 62.1
Ca_01549_v3 Cicer arietinum L. HOM05D004713 ORTHO05D005658 4.3e-41 172.2 123 64.2
Aqoxy1G03926 Aquilegia oxysepala HOM05D004713 ORTHO05D005658 4.0e-39 165.6 113 67.3
Oeu006770.1 Olea europaea HOM05D004713 ORTHO05D005658 3.3e-33 146.0 135 54.8
CDE12G0380 Ceratophyllum demersum HOM05D004713 ORTHO05D005658 9.5e-25 117.9 89 62.9
unitig_699.g19605 Utricularia gibba HOM05D004713 ORTHO05D005658 1.3e-21 107.5 122 45.1
Actinidia25411 Actinidia chinensis HOM05D004713 ORTHO05D005658 7.8e-19 98.2 90 60.0
MD10G1189200 Malus domestica HOM05D004713 ORTHO05D005658 3.2e-12 76.3 49 69.4
SMO271G0135 Selaginella moellendorffii HOM05D014246 ORTHO05D017314 4.6e-11 72.4 69 42.0
Pp3c16_12490 Physcomitrium patens HOM05D014246 ORTHO05D017314 3.9e-10 69.3 63 46.0
RcHm_v2.0_Chr1g0330511 Rosa chinensis HOM05D004713 ORTHO05D005658 6.6e-10 68.6 96 46.9
Pp3c5_14970 Physcomitrium patens HOM05D014246 ORTHO05D017314 2.1e-08 63.5 45 55.6
SEGI_20372 Sequoiadendron giganteum HOM05D014246 ORTHO05D017314 4.7e-08 62.4 58 41.4
Cre12.g557350 Chlamydomonas reinhardtii HOM05D014246 ORTHO05D017314 6.2e-08 62.0 71 42.3
Haze_26739 Corylus avellana HOM05D002681 ORTHO05D003372 5.3e-07 58.9 57 45.6
Cre13.g585750 Chlamydomonas reinhardtii HOM05D014246 ORTHO05D017314 1.2e-06 57.8 44 50.0
MCO16G348 Micromonas commoda HOM05D002681 ORTHO05D003372 1.2e-06 57.8 60 43.3
AagrBONN_evm.TU.Sc2ySwM_369.133 Anthoceros agrestis HOM05D014246 ORTHO05D017314 2.0e-06 57.0 66 39.4
Pp3c12_2830 Physcomitrium patens HOM05D002681 ORTHO05D003372 7.6e-06 55.1 58 46.6
Rhsim08G0039000 Rhododendron simsii HOM05D002681 ORTHO05D000343 9.9e-06 54.7 45 53.3


User provided reference genes

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